Folding Forum

How protein dynamics change during antibody maturation is largely unknown. In the 18265-18274 project series we aim to generate large simulation datasets to help understand how HIV and influenza neutralizing antibodies achieve their potency. Here we have the rest of the projects in the series: [GPU]...

How protein dynamics change during antibody maturation is largely unknown. In the 18265-18274 project series we aim to generate large simulation datasets to help understand how HIV and influenza neutralizing antibodies achieve their potency. Here we have the first two projects of the series: [GPU] p...

Thank you! I've passed this along to our networking team to see what they can do. This issue seems to erratically pop up for us and we've had trouble pinning down a reason.

[GPU] p18258 – Simulations of tau's proline rich region in Amber19sb with opc3 water. <project type="OPENMM_27" id="18258"> <stats-credit v="38000"/> <deadline v="5"/> https://stats.foldingathome.org/project/18258 [GPU] p18260 – Simulations of tau's proline ri...

[GPU] p18256 – Simulations of tau's proline rich region in Amber03 with TIP3P water. <project type="OPENMM_27" id="18256"> <stats-credit v="39000"/> <deadline v="5"/> https://stats.foldingathome.org/project/18256 [GPU] p18257 – Simulations of tau's proline ric...

[GPU] p18255 – Simulations of tau's proline rich region in Amber14SB with TIP3P water. A note that that this project, like 18251, is particularly RAM intensive as it has a high atom count. We've restricted assignment to clients with >8Gb RAM available. https://stats.foldingathome.org/project/18255 <...

Thanks again Retvari Zoltan. I wanted to pop in to let you know we've logged the above instances, but remain flummoxed about what is causing the issue (and even something we can control to your point about network congestion).

Hey arisu, sorry an 18224 made it to your GPU. We've got additional restrictions in place now to prevent this. I believe that 12705 has been adjusted though I'm not the project manager for that project. To your previous question: Actually, how long after the timeout expires does a duplicate WU get s...

[GPU] p18242 – Simulations of lysozyme in Amber99SB-star-ILDN with TIP4PD water
https://stats.foldingathome.org/project/18242

[GPU] p18243 – Simulations of lysozyme in Amber19sb with OPC3 water https://stats.foldingathome.org/project/18243 <project type="OPENMM_26" id="18243"> <stats-credit v="39000"/> <deadline v="5"/> [GPU] p18244 – Simulations of lysozyme in Amber19sb with OPC3-po...

Thanks!

Thank you!

Thank you! I've passed this along to our network guru .

Hi Nicolas- Hmm, I wouldn't expect the reset in error counts to affect the record of who all has tried a WU. We see this in the above WU reports where a given WU has been issued 10+ times (the default max is 5 attempts). How soon after a failure are you checking? It could be that it takes a little w...

Hi Andre_Ti- Glad the errors have slowed down- I'm hopeful we will have core patches available soon. Regarding a progress bar, I'm not sure- it should be feasible! Perhaps the reason this hasn't been implemented yet is that projects are occasionally adjusted on-the-fly and either taken down before 1...