Project: 3065 (Run 4, Clone 388, Gen 15) seg fault

[alpha754293]

console output:

Code: Select all

Launch directory: /share/fah2
Executable: ./fah2
Arguments: -smp 4 -verbosity 9

[07:41:28] - Ask before connecting: No
[07:41:28] - User name: alpha754293 (Team 596)
[07:41:28] - User ID: FD799E4013D237A
[07:41:28] - Machine ID: 2
[07:41:28]
[07:41:28] Loaded queue successfully.
[07:41:28]
[07:41:28] - Autosending finished units... [March 23 07:41:28 UTC]
[07:41:28] + Processing work unit
[07:41:28] Trying to send all finished work units
[07:41:28] Work type a1 not eligible for variable processors
[07:41:28] + No unsent completed units remaining.
[07:41:28] Core required: FahCore_a1.exe
[07:41:28] - Autosend completed
[07:41:28] Core found.
[07:41:28] Working on queue slot 05 [March 23 07:41:28 UTC]
[07:41:28] + Working ...
[07:41:28] - Calling './mpiexec -np 4 -host 127.0.0.1 ./FahCore_a1.exe -dir work/ -suffix 05 -checkpoint 15 -verbose -lifeline 4466 -version 624'

[07:41:28]
[07:41:28] *------------------------------*
[07:41:28] Folding@Home Gromacs SMP Core
[07:41:28] Version 1.74 (November 27, 2006)
[07:41:28]
[07:41:28] Preparing to commence simulation
[07:41:28] - Ensuring status. Please wait.
[07:41:29]
[07:41:30] Project: 3065 (Run 4, Clone 388, Gen 15)
[07:41:30]
[07:41:30] Assembly optimizations on if available.
[07:41:30] Entering M.D.
[07:41:46]
[07:41:46] - Expanded 1641524 -> 952437
[07:41:46] Project: 3065 (Run 4, Clone 38
[07:41:46] Project: 3065 (Run 4, Clone 388, Gen 15)
[07:41:46]
[07:41:46] Entering M.D.
NNODES=4, MYRANK=0, HOSTNAME=computenode
NNODES=4, MYRANK=1, HOSTNAME=computenode
NNODES=4, MYRANK=2, HOSTNAME=computenode
NNODES=4, MYRANK=3, HOSTNAME=computenode
NODEID=2 argc=15
NODEID=1 argc=15
NODEID=0 argc=15
NODEID=3 argc=15
      Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
       Copyright (c) 1991-2000, University of Groningen, The Netherlands.
             Copyright (c) 2001-2004, The GROMACS development team,
            check out http://www.gromacs.org for more information.

        This inclusion of Gromacs code in the Folding@Home Core is under
        a special license (see http://folding.stanford.edu/gromacs.html)
         specially granted to Stanford by the copyright holders. If you
          are interested in using Gromacs, visit www.gromacs.org where
                you can download a free version of Gromacs under
         the terms of the GNU General Public License (GPL) as published
       by the Free Software Foundation; either version 2 of the License,
                     or (at your option) any later version.

(single precision)
[07:41:53] Calling FAH init
[07:41:53] Read topology
[07:41:53] (Starting from checkpoint)
[07:41:53] Read checkpoint
starting mdrun '66728 p3065_lambda5_99sb_big'
2500000 steps,   5000.0 ps.

[07:41:53] ent)
[07:41:53] Extra SSE boost OK.
[07:41:53] 8 percent)
[07:41:53] Extra SSE boost OK.
[07:41:53] s
[07:41:53] Completed 700000 out of 2500000 steps  (28 percent)
[07:41:53] Extra SSE boost OK.
[07:56:53] Timered checkpoint triggered.
[07:58:25] Writing local files
[07:58:25] Completed 725000 out of 2500000 steps  (29 percent)
[08:13:24] Timered checkpoint triggered.
[08:14:56] Writing local files
[08:14:56] Completed 750000 out of 2500000 steps  (30 percent)
[08:29:55] Timered checkpoint triggered.
[08:31:05] Writing local files
[08:31:05] Completed 775000 out of 2500000 steps  (31 percent)
[08:46:05] Timered checkpoint triggered.
[08:47:23] Writing local files
[08:47:23] Completed 800000 out of 2500000 steps  (32 percent)
[09:02:23] Timered checkpoint triggered.
[09:02:49] Writing local files
[09:02:49] Completed 825000 out of 2500000 steps  (33 percent)
[09:17:48] Timered checkpoint triggered.
[09:18:09] Writing local files
[09:18:09] Completed 850000 out of 2500000 steps  (34 percent)
[09:33:09] Timered checkpoint triggered.
[09:33:32] Writing local files
[09:33:32] Completed 875000 out of 2500000 steps  (35 percent)
[09:48:33] Timered checkpoint triggered.
[09:48:52] Writing local files
[09:48:52] Completed 900000 out of 2500000 steps  (36 percent)
[10:03:52] Timered checkpoint triggered.
[10:04:44] Writing local files
[10:04:44] Completed 925000 out of 2500000 steps  (37 percent)
[10:19:45] Timered checkpoint triggered.
[10:20:35] Writing local files
[10:20:35] Completed 950000 out of 2500000 steps  (38 percent)
[10:35:34] Timered checkpoint triggered.
[10:36:26] Writing local files
[10:36:26] Completed 975000 out of 2500000 steps  (39 percent)
[10:51:26] Timered checkpoint triggered.
[10:52:12] Writing local files
[10:52:13] Completed 1000000 out of 2500000 steps  (40 percent)
[11:07:13] Timered checkpoint triggered.
[11:08:06] Writing local files
[11:08:06] Completed 1025000 out of 2500000 steps  (41 percent)
[11:23:06] Timered checkpoint triggered.
[11:24:12] Writing local files
[11:24:12] Completed 1050000 out of 2500000 steps  (42 percent)
[11:39:12] Timered checkpoint triggered.
[11:40:12] Writing local files
[11:40:12] Completed 1075000 out of 2500000 steps  (43 percent)
[11:55:12] Timered checkpoint triggered.
[11:55:38] Writing local files
[11:55:38] Completed 1100000 out of 2500000 steps  (44 percent)
[12:01:50]
[12:01:50] Folding@home Core Shutdown: INTERRUPTED
[0]0:Return code = 102
[0]1:Return code = 0, signaled with Segmentation fault
[0]2:Return code = 0, signaled with Segmentation fault
[0]3:Return code = 0, signaled with Segmentation fault
[12:01:54] CoreStatus = 66 (102)
[12:01:54] + Shutdown requested by user. Exiting.***** Got a SIGTERM signal (15)[12:01:54] Killing all core threads

Folding@Home Client Shutdown.

returned to shell.

FAHlog not available at the moment. (system's running CFD simulations for me right now). Will post at the earliest possible time.

[toTOW]

Someone else was able to complete it for full credit, but not within the preferred deadline.

[alpha754293]

FAHlog:

Code: Select all

--- Opening Log file [March 21 21:13:54 UTC] 


# Linux SMP Console Edition ###################################################
###############################################################################

                       Folding@Home Client Version 6.24beta

                          http://folding.stanford.edu

###############################################################################
###############################################################################

Launch directory: /share/fah2
Executable: ./fah2
Arguments: -smp 4 -verbosity 9 

[21:13:54] - Ask before connecting: No
[21:13:54] - User name: alpha754293 (Team 596)
[21:13:54] - User ID: FD799E4013D237A
[21:13:54] - Machine ID: 2
[21:13:54] 
[21:13:54] Loaded queue successfully.
[21:13:54] 
[21:13:54] + Processing work unit
[21:13:54] Work type a1 not eligible for variable processors
[21:13:54] Core required: FahCore_a1.exe
[21:13:54] - Autosending finished units... [March 21 21:13:54 UTC]
[21:13:54] Trying to send all finished work units
[21:13:54] + No unsent completed units remaining.
[21:13:54] - Autosend completed
[21:13:54] Core found.
[21:13:54] Working on queue slot 04 [March 21 21:13:54 UTC]
[21:13:54] + Working ...
[21:13:54] - Calling './mpiexec -np 4 -host 127.0.0.1 ./FahCore_a1.exe -dir work/ -suffix 04 -checkpoint 15 -verbose -lifeline 4472 -version 624'

[21:13:54] 
[21:13:54] *------------------------------*
[21:13:54] Folding@Home Gromacs SMP Core
[21:13:54] Version 1.74 (November 27, 2006)
[21:13:54] 
[21:13:54] Preparing to commence simulation
[21:13:54] - Ensuring status. Please wait.
[21:13:55] 
[21:13:55] Project: 3065 (Run 2, Clone 541, Gen 2)
[21:13:55] 
[21:13:55] Assembly optimizations on if available.
[21:13:55] Entering M.D.
[21:14:11] K
[21:14:12] decompressed 580.2 percent)
[21:14:12] 
[21:14:12] Project: 3065 (Run 2, Clone 541, Gen 2)
[21:14:12] 
[21:14:12] Entering M.D.
[21:14:12] one 541, Gen 2)
[21:14:12] 
[21:14:12] Entering M.D.
[21:14:18] sb_big
[21:14:18] Writing local files
[21:14:19] 00000 out of 2500000 steps  (40 percent)
[21:14:19] Extra SSE boost OK.
[21:14:19] E boost OK.
[21:14:19] 0 percent)
[21:14:19] Extra SSE boost OK.
[21:29:54]  files
[21:29:54] Completed 1025000 out of 2500000 steps  (41 percent)
[21:44:54] Timered checkpoint triggered.
[21:45:18] Writing local files
[21:45:19] Completed 1050000 out of 2500000 steps  (42 percent)
[22:00:18] Timered checkpoint triggered.
[22:00:43] Writing local files
[22:00:43] Completed 1075000 out of 2500000 steps  (43 percent)
[22:15:42] Timered checkpoint triggered.
[22:16:06] Writing local files
[22:16:06] Completed 1100000 out of 2500000 steps  (44 percent)
[22:31:06] Timered checkpoint triggered.
[22:31:45] Writing local files
[22:31:45] Completed 1125000 out of 2500000 steps  (45 percent)
[22:46:45] Timered checkpoint triggered.
[22:47:48] Writing local files
[22:47:48] Completed 1150000 out of 2500000 steps  (46 percent)
[23:02:48] Timered checkpoint triggered.
[23:03:58] Writing local files
[23:03:59] Completed 1175000 out of 2500000 steps  (47 percent)
[23:18:58] Timered checkpoint triggered.
[23:20:23] Writing local files
[23:20:24] Completed 1200000 out of 2500000 steps  (48 percent)
[23:35:23] Timered checkpoint triggered.
[23:36:26] Writing local files
[23:36:26] Completed 1225000 out of 2500000 steps  (49 percent)
[23:51:26] Timered checkpoint triggered.
[23:52:36] Writing local files
[23:52:36] Completed 1250000 out of 2500000 steps  (50 percent)
[00:07:36] Timered checkpoint triggered.
[00:08:05] Writing local files
[00:08:05] Completed 1275000 out of 2500000 steps  (51 percent)
[00:23:04] Timered checkpoint triggered.
[00:23:32] Writing local files
[00:23:32] Completed 1300000 out of 2500000 steps  (52 percent)
[00:38:32] Timered checkpoint triggered.
[00:39:41] Writing local files
[00:39:41] Completed 1325000 out of 2500000 steps  (53 percent)
[00:54:41] Timered checkpoint triggered.
[00:56:05] Writing local files
[00:56:05] Completed 1350000 out of 2500000 steps  (54 percent)
[01:11:05] Timered checkpoint triggered.
[01:12:08] Writing local files
[01:12:08] Completed 1375000 out of 2500000 steps  (55 percent)
[01:27:07] Timered checkpoint triggered.
[01:28:24] Writing local files
[01:28:24] Completed 1400000 out of 2500000 steps  (56 percent)
[01:43:24] Timered checkpoint triggered.
[01:44:05] Writing local files
[01:44:05] Completed 1425000 out of 2500000 steps  (57 percent)
[01:59:04] Timered checkpoint triggered.
[01:59:37] Writing local files
[01:59:37] Completed 1450000 out of 2500000 steps  (58 percent)
[02:14:36] Timered checkpoint triggered.
[02:15:08] Writing local files
[02:15:08] Completed 1475000 out of 2500000 steps  (59 percent)
[02:30:08] Timered checkpoint triggered.
[02:31:39] Writing local files
[02:31:39] Completed 1500000 out of 2500000 steps  (60 percent)
[02:46:38] Timered checkpoint triggered.
[02:48:08] Writing local files
[02:48:08] Completed 1525000 out of 2500000 steps  (61 percent)
[03:03:08] Timered checkpoint triggered.
[03:04:09] Writing local files
[03:04:09] Completed 1550000 out of 2500000 steps  (62 percent)
[03:13:54] - Autosending finished units... [March 22 03:13:54 UTC]
[03:13:54] Trying to send all finished work units
[03:13:54] + No unsent completed units remaining.
[03:13:54] - Autosend completed
[03:19:08] Timered checkpoint triggered.
[03:20:18] Writing local files
[03:20:18] Completed 1575000 out of 2500000 steps  (63 percent)
[03:35:18] Timered checkpoint triggered.
[03:36:14] Writing local files
[03:36:15] Completed 1600000 out of 2500000 steps  (64 percent)
[03:51:14] Timered checkpoint triggered.
[03:52:07] Writing local files
[03:52:08] Completed 1625000 out of 2500000 steps  (65 percent)
[04:07:07] Timered checkpoint triggered.
[04:08:17] Writing local files
[04:08:17] Completed 1650000 out of 2500000 steps  (66 percent)
[04:23:17] Timered checkpoint triggered.
[04:24:21] Writing local files
[04:24:21] Completed 1675000 out of 2500000 steps  (67 percent)
[04:39:21] Timered checkpoint triggered.
[04:40:49] Writing local files
[04:40:49] Completed 1700000 out of 2500000 steps  (68 percent)
[04:55:49] Timered checkpoint triggered.
[04:57:11] Writing local files
[04:57:11] Completed 1725000 out of 2500000 steps  (69 percent)
[05:12:11] Timered checkpoint triggered.
[05:13:19] Writing local files
[05:13:19] Completed 1750000 out of 2500000 steps  (70 percent)
[05:28:19] Timered checkpoint triggered.
[05:29:25] Writing local files
[05:29:25] Completed 1775000 out of 2500000 steps  (71 percent)
[05:44:25] Timered checkpoint triggered.
[05:44:52] Writing local files
[05:44:52] Completed 1800000 out of 2500000 steps  (72 percent)
[05:59:52] Timered checkpoint triggered.
[06:00:49] Writing local files
[06:00:49] Completed 1825000 out of 2500000 steps  (73 percent)
[06:15:49] Timered checkpoint triggered.
[06:17:01] Writing local files
[06:17:01] Completed 1850000 out of 2500000 steps  (74 percent)
[06:32:01] Timered checkpoint triggered.
[06:33:06] Writing local files
[06:33:06] Completed 1875000 out of 2500000 steps  (75 percent)
[06:48:06] Timered checkpoint triggered.
[06:49:12] Writing local files
[06:49:12] Completed 1900000 out of 2500000 steps  (76 percent)
[07:04:12] Timered checkpoint triggered.
[07:05:17] Writing local files
[07:05:17] Completed 1925000 out of 2500000 steps  (77 percent)
[07:20:17] Timered checkpoint triggered.
[07:21:46] Writing local files
[07:21:46] Completed 1950000 out of 2500000 steps  (78 percent)
[07:36:46] Timered checkpoint triggered.
[07:38:29] Writing local files
[07:38:29] Completed 1975000 out of 2500000 steps  (79 percent)
[07:53:29] Timered checkpoint triggered.
[07:54:42] Writing local files
[07:54:42] Completed 2000000 out of 2500000 steps  (80 percent)
[08:09:42] Timered checkpoint triggered.
[08:10:53] Writing local files
[08:10:53] Completed 2025000 out of 2500000 steps  (81 percent)
[08:25:53] Timered checkpoint triggered.
[08:26:41] Writing local files
[08:26:42] Completed 2050000 out of 2500000 steps  (82 percent)
[08:41:41] Timered checkpoint triggered.
[08:42:55] Writing local files
[08:42:55] Completed 2075000 out of 2500000 steps  (83 percent)
[08:57:54] Timered checkpoint triggered.
[08:58:57] Writing local files
[08:58:57] Completed 2100000 out of 2500000 steps  (84 percent)
[09:13:54] - Autosending finished units... [March 22 09:13:54 UTC]
[09:13:54] Trying to send all finished work units
[09:13:54] + No unsent completed units remaining.
[09:13:54] - Autosend completed
[09:13:57] Timered checkpoint triggered.
[09:14:59] Writing local files
[09:14:59] Completed 2125000 out of 2500000 steps  (85 percent)
[09:29:59] Timered checkpoint triggered.
[09:31:37] Writing local files
[09:31:37] Completed 2150000 out of 2500000 steps  (86 percent)
[09:46:37] Timered checkpoint triggered.
[09:47:48] Writing local files
[09:47:48] Completed 2175000 out of 2500000 steps  (87 percent)
[10:02:48] Timered checkpoint triggered.
[10:03:30] Writing local files
[10:03:30] Completed 2200000 out of 2500000 steps  (88 percent)
[10:18:30] Timered checkpoint triggered.
[10:19:00] Writing local files
[10:19:01] Completed 2225000 out of 2500000 steps  (89 percent)
[10:34:01] Timered checkpoint triggered.
[10:34:32] Writing local files
[10:34:33] Completed 2250000 out of 2500000 steps  (90 percent)
[10:49:32] Timered checkpoint triggered.
[10:50:45] Writing local files
[10:50:45] Completed 2275000 out of 2500000 steps  (91 percent)
[11:05:45] Timered checkpoint triggered.
[11:06:56] Writing local files
[11:06:56] Completed 2300000 out of 2500000 steps  (92 percent)
[11:21:56] Timered checkpoint triggered.
[11:23:08] Writing local files
[11:23:09] Completed 2325000 out of 2500000 steps  (93 percent)
[11:38:08] Timered checkpoint triggered.
[11:39:00] Writing local files
[11:39:00] Completed 2350000 out of 2500000 steps  (94 percent)
[11:54:00] Timered checkpoint triggered.
[11:55:00] Writing local files
[11:55:01] Completed 2375000 out of 2500000 steps  (95 percent)
[12:10:00] Timered checkpoint triggered.
[12:11:16] Writing local files
[12:11:16] Completed 2400000 out of 2500000 steps  (96 percent)
[12:26:16] Timered checkpoint triggered.
[12:26:54] Writing local files
[12:26:54] Completed 2425000 out of 2500000 steps  (97 percent)
[12:41:54] Timered checkpoint triggered.
[12:42:20] Writing local files
[12:42:20] Completed 2450000 out of 2500000 steps  (98 percent)
[12:57:20] Timered checkpoint triggered.
[12:57:46] Writing local files
[12:57:47] Completed 2475000 out of 2500000 steps  (99 percent)
[13:12:46] Timered checkpoint triggered.
[13:14:10] Writing local files
[13:14:10] Completed 2500000 out of 2500000 steps  (100 percent)
[13:14:10] Writing final coordinates.
[13:14:10] Past main M.D. loop
[13:14:10] Will end MPI now
[13:15:10] 
[13:15:10] Finished Work Unit:
[13:15:10] - Reading up to 1601592 from "work/wudata_04.arc": Read 1601592
[13:15:10] - Reading up to 493216 from "work/wudata_04.xtc": Read 493216
[13:15:10] goefile size: 0
[13:15:10] logfile size: 85484
[13:15:10] Leaving Run
[13:15:10] - Writing 2283128 bytes of core data to disk...
[13:15:10]   ... Done.
[13:15:11] - Shutting down core
[13:15:11] 
[13:15:11] Folding@home Core Shutdown: FINISHED_UNIT
[13:15:17] CoreStatus = 64 (100)
[13:15:17] Unit 4 finished with 70 percent of time to deadline remaining.
[13:15:17] Updated performance fraction: 0.755167
[13:15:17] Sending work to server
[13:15:17] Project: 3065 (Run 2, Clone 541, Gen 2)


[13:15:17] + Attempting to send results [March 22 13:15:17 UTC]
[13:15:17] - Reading file work/wuresults_04.dat from core
[13:15:17]   (Read 2283128 bytes from disk)
[13:15:17] Connecting to http://171.64.65.63:8080/
[13:15:24] Posted data.
[13:15:24] Initial: 0000; - Uploaded at ~278 kB/s
[13:15:25] - Averaged speed for that direction ~257 kB/s
[13:15:25] + Results successfully sent
[13:15:25] Thank you for your contribution to Folding@Home.
[13:15:25] + Number of Units Completed: 21

[13:19:25] - Warning: Could not delete all work unit files (4): Core returned invalid code
[13:19:25] Trying to send all finished work units
[13:19:25] + No unsent completed units remaining.
[13:19:25] - Preparing to get new work unit...
[13:19:25] + Attempting to get work packet
[13:19:25] - Will indicate memory of 16003 MB
[13:19:25] - Connecting to assignment server
[13:19:25] Connecting to http://assign.stanford.edu:8080/
[13:19:25] Posted data.
[13:19:25] Initial: 40AB; - Successful: assigned to (171.64.65.63).
[13:19:25] + News From Folding@Home: Welcome to Folding@Home
[13:19:26] Loaded queue successfully.
[13:19:26] Connecting to http://171.64.65.63:8080/
[13:19:28] Posted data.
[13:19:28] Initial: 0000; - Receiving payload (expected size: 1642036)
[13:19:38] - Downloaded at ~160 kB/s
[13:19:38] - Averaged speed for that direction ~325 kB/s
[13:19:38] + Received work.
[13:19:38] Trying to send all finished work units
[13:19:38] + No unsent completed units remaining.
[13:19:38] + Closed connections
[13:19:38] 
[13:19:38] + Processing work unit
[13:19:38] Work type a1 not eligible for variable processors
[13:19:38] Core required: FahCore_a1.exe
[13:19:38] Core found.
[13:19:38] Working on queue slot 05 [March 22 13:19:38 UTC]
[13:19:38] + Working ...
[13:19:38] - Calling './mpiexec -np 4 -host 127.0.0.1 ./FahCore_a1.exe -dir work/ -suffix 05 -checkpoint 15 -verbose -lifeline 4472 -version 624'

[13:19:38] 
[13:19:38] *------------------------------*
[13:19:38] Folding@Home Gromacs SMP Core
[13:19:38] Version 1.74 (November 27, 2006)
[13:19:38] 
[13:19:38] Preparing to commence simulation
[13:19:38] - Ensuring status. Please wait.
[13:19:38] Created dyn
[13:19:38] - Files status OK
[13:19:38] - Expanded 1641524 -> 9524377 (decompressed 580.2 percent)
[13:19:38] - Starting from initial work packet
[13:19:38] 
[13:19:38] Project: 3065 (Run 4, Clone 388, Gen 15)
[13:19:38] 
[13:19:38] Assembly optimizations on if available.
[13:19:38] Entering M.D.
[13:19:55] al work pa- Starting from initial work packet
[13:19:55] 
[13:19:55] Project: 30Entering M.D.
[13:19:55] ne 388, Gen 15)
[13:19:55] 
[13:19:55] Entering M.D.
[13:20:02] 6728 p3065_lambda5_99sb_big
[13:20:02] Writing local files
[13:20:02] Extra SSE Extra SSE Writing local files
[13:20:02] Completed 0 out of 2500000 steps  (0 percent)
[13:35:02] Timered checkpoint triggered.
[13:35:25] Writing local files
[13:35:26] Completed 25000 out of 2500000 steps  (1 percent)
[13:50:26] Timered checkpoint triggered.
[13:51:27] Writing local files
[13:51:27] Completed 50000 out of 2500000 steps  (2 percent)
[14:06:27] Timered checkpoint triggered.
[14:08:11] Writing local files
[14:08:11] Completed 75000 out of 2500000 steps  (3 percent)
[14:23:11] Timered checkpoint triggered.
[14:24:41] Writing local files
[14:24:41] Completed 100000 out of 2500000 steps  (4 percent)
[14:39:41] Timered checkpoint triggered.
[14:40:55] Writing local files
[14:40:55] Completed 125000 out of 2500000 steps  (5 percent)
[14:55:55] Timered checkpoint triggered.
[14:56:50] Writing local files
[14:56:50] Completed 150000 out of 2500000 steps  (6 percent)
[15:11:49] Timered checkpoint triggered.
[15:12:44] Writing local files
[15:12:44] Completed 175000 out of 2500000 steps  (7 percent)
[15:13:54] - Autosending finished units... [March 22 15:13:54 UTC]
[15:13:54] Trying to send all finished work units
[15:13:54] + No unsent completed units remaining.
[15:13:54] - Autosend completed
[15:27:44] Timered checkpoint triggered.
[15:29:04] Writing local files
[15:29:05] Completed 200000 out of 2500000 steps  (8 percent)
[15:44:05] Timered checkpoint triggered.
[15:45:13] Writing local files
[15:45:13] Completed 225000 out of 2500000 steps  (9 percent)
[16:00:13] Timered checkpoint triggered.
[16:01:00] Writing local files
[16:01:00] Completed 250000 out of 2500000 steps  (10 percent)
[16:16:00] Timered checkpoint triggered.
[16:16:59] Writing local files
[16:16:59] Completed 275000 out of 2500000 steps  (11 percent)
[16:32:00] Timered checkpoint triggered.
[16:33:29] Writing local files
[16:33:29] Completed 300000 out of 2500000 steps  (12 percent)
[16:48:29] Timered checkpoint triggered.
[16:49:56] Writing local files
[16:49:56] Completed 325000 out of 2500000 steps  (13 percent)
[17:04:57] Timered checkpoint triggered.
[17:06:27] Writing local files
[17:06:27] Completed 350000 out of 2500000 steps  (14 percent)
[17:21:27] Timered checkpoint triggered.
[17:22:33] Writing local files
[17:22:33] Completed 375000 out of 2500000 steps  (15 percent)
[17:37:33] Timered checkpoint triggered.
[17:38:50] Writing local files
[17:38:50] Completed 400000 out of 2500000 steps  (16 percent)
[17:53:51] Timered checkpoint triggered.
[17:55:22] Writing local files
[17:55:23] Completed 425000 out of 2500000 steps  (17 percent)
[18:10:22] Timered checkpoint triggered.
[18:11:49] Writing local files
[18:11:49] Completed 450000 out of 2500000 steps  (18 percent)
[18:26:48] Timered checkpoint triggered.
[18:27:54] Writing local files
[18:27:54] Completed 475000 out of 2500000 steps  (19 percent)
[18:42:54] Timered checkpoint triggered.
[18:44:21] Writing local files
[18:44:21] Completed 500000 out of 2500000 steps  (20 percent)
[18:59:22] Timered checkpoint triggered.
[19:00:41] Writing local files
[19:00:41] Completed 525000 out of 2500000 steps  (21 percent)
[19:15:42] Timered checkpoint triggered.
[19:16:43] Writing local files
[19:16:43] Completed 550000 out of 2500000 steps  (22 percent)
[19:31:43] Timered checkpoint triggered.
[19:32:47] Writing local files
[19:32:47] Completed 575000 out of 2500000 steps  (23 percent)
[19:47:48] Timered checkpoint triggered.
[19:48:49] Writing local files
[19:48:49] Completed 600000 out of 2500000 steps  (24 percent)
[20:03:48] Timered checkpoint triggered.
[20:04:51] Writing local files
[20:04:51] Completed 625000 out of 2500000 steps  (25 percent)
[20:19:52] Timered checkpoint triggered.
[20:20:30] Writing local files
[20:20:30] Completed 650000 out of 2500000 steps  (26 percent)
[20:35:30] Timered checkpoint triggered.
[20:37:01] Writing local files
[20:37:01] Completed 675000 out of 2500000 steps  (27 percent)
[20:52:02] Timered checkpoint triggered.
[20:53:24] Writing local files
[20:53:24] Completed 700000 out of 2500000 steps  (28 percent)
[20:54:10] ***** Got an Activate signal (2)
[20:54:10] Killing all core threads

Folding@Home Client Shutdown.


--- Opening Log file [March 23 07:41:28 UTC] 


# Linux SMP Console Edition ###################################################
###############################################################################

                       Folding@Home Client Version 6.24beta

                          http://folding.stanford.edu

###############################################################################
###############################################################################

Launch directory: /share/fah2
Executable: ./fah2
Arguments: -smp 4 -verbosity 9 

[07:41:28] - Ask before connecting: No
[07:41:28] - User name: alpha754293 (Team 596)
[07:41:28] - User ID: FD799E4013D237A
[07:41:28] - Machine ID: 2
[07:41:28] 
[07:41:28] Loaded queue successfully.
[07:41:28] 
[07:41:28] - Autosending finished units... [March 23 07:41:28 UTC]
[07:41:28] + Processing work unit
[07:41:28] Trying to send all finished work units
[07:41:28] Work type a1 not eligible for variable processors
[07:41:28] + No unsent completed units remaining.
[07:41:28] Core required: FahCore_a1.exe
[07:41:28] - Autosend completed
[07:41:28] Core found.
[07:41:28] Working on queue slot 05 [March 23 07:41:28 UTC]
[07:41:28] + Working ...
[07:41:28] - Calling './mpiexec -np 4 -host 127.0.0.1 ./FahCore_a1.exe -dir work/ -suffix 05 -checkpoint 15 -verbose -lifeline 4466 -version 624'

[07:41:28] 
[07:41:28] *------------------------------*
[07:41:28] Folding@Home Gromacs SMP Core
[07:41:28] Version 1.74 (November 27, 2006)
[07:41:28] 
[07:41:28] Preparing to commence simulation
[07:41:28] - Ensuring status. Please wait.
[07:41:29] 
[07:41:30] Project: 3065 (Run 4, Clone 388, Gen 15)
[07:41:30] 
[07:41:30] Assembly optimizations on if available.
[07:41:30] Entering M.D.
[07:41:46] 
[07:41:46] - Expanded 1641524 -> 952437
[07:41:46] Project: 3065 (Run 4, Clone 38
[07:41:46] Project: 3065 (Run 4, Clone 388, Gen 15)
[07:41:46] 
[07:41:46] Entering M.D.
[07:41:53] Calling FAH init
[07:41:53] Read topology
[07:41:53] (Starting from checkpoint)
[07:41:53] Read checkpoint
[07:41:53] ent)
[07:41:53] Extra SSE boost OK.
[07:41:53] 8 percent)
[07:41:53] Extra SSE boost OK.
[07:41:53] s
[07:41:53] Completed 700000 out of 2500000 steps  (28 percent)
[07:41:53] Extra SSE boost OK.
[07:56:53] Timered checkpoint triggered.
[07:58:25] Writing local files
[07:58:25] Completed 725000 out of 2500000 steps  (29 percent)
[08:13:24] Timered checkpoint triggered.
[08:14:56] Writing local files
[08:14:56] Completed 750000 out of 2500000 steps  (30 percent)
[08:29:55] Timered checkpoint triggered.
[08:31:05] Writing local files
[08:31:05] Completed 775000 out of 2500000 steps  (31 percent)
[08:46:05] Timered checkpoint triggered.
[08:47:23] Writing local files
[08:47:23] Completed 800000 out of 2500000 steps  (32 percent)
[09:02:23] Timered checkpoint triggered.
[09:02:49] Writing local files
[09:02:49] Completed 825000 out of 2500000 steps  (33 percent)
[09:17:48] Timered checkpoint triggered.
[09:18:09] Writing local files
[09:18:09] Completed 850000 out of 2500000 steps  (34 percent)
[09:33:09] Timered checkpoint triggered.
[09:33:32] Writing local files
[09:33:32] Completed 875000 out of 2500000 steps  (35 percent)
[09:48:33] Timered checkpoint triggered.
[09:48:52] Writing local files
[09:48:52] Completed 900000 out of 2500000 steps  (36 percent)
[10:03:52] Timered checkpoint triggered.
[10:04:44] Writing local files
[10:04:44] Completed 925000 out of 2500000 steps  (37 percent)
[10:19:45] Timered checkpoint triggered.
[10:20:35] Writing local files
[10:20:35] Completed 950000 out of 2500000 steps  (38 percent)
[10:35:34] Timered checkpoint triggered.
[10:36:26] Writing local files
[10:36:26] Completed 975000 out of 2500000 steps  (39 percent)
[10:51:26] Timered checkpoint triggered.
[10:52:12] Writing local files
[10:52:13] Completed 1000000 out of 2500000 steps  (40 percent)
[11:07:13] Timered checkpoint triggered.
[11:08:06] Writing local files
[11:08:06] Completed 1025000 out of 2500000 steps  (41 percent)
[11:23:06] Timered checkpoint triggered.
[11:24:12] Writing local files
[11:24:12] Completed 1050000 out of 2500000 steps  (42 percent)
[11:39:12] Timered checkpoint triggered.
[11:40:12] Writing local files
[11:40:12] Completed 1075000 out of 2500000 steps  (43 percent)
[11:55:12] Timered checkpoint triggered.
[11:55:38] Writing local files
[11:55:38] Completed 1100000 out of 2500000 steps  (44 percent)
[12:01:50] 
[12:01:50] Folding@home Core Shutdown: INTERRUPTED
[12:01:54] CoreStatus = 66 (102)
[12:01:54] + Shutdown requested by user. Exiting.***** Got a SIGTERM signal (15)
[12:01:54] Killing all core threads

Folding@Home Client Shutdown.

restarting client...

[alpha754293]

picking up from where it left off @ 65%.

Preferred deadline: Tue Mar 24 13:07 EDT 2009
current ETA: Tue Mar 24 10:42 EDT 2009

[susato]

Go for it! BTW, which CFD program are you using, and have you ever tried leaving Folding running during the simulation runs? The inquiring mind of a COMSOL user wants to know.

[alpha754293]

Go for it! BTW, which CFD program are you using, and have you ever tried leaving Folding running during the simulation runs? The inquiring mind of a COMSOL user wants to know.

Currently, CFX. I think that it's going to depend.

I'm running it in Windows (Server 2k3, x64 Ent. Ed.) and I'm running F@H in Linux. So whenever I switch tasks, I have to reboot the system. In theory, the way F@H is designed (at least in theory) is that the CPU clients should have an idle priority meaning that anything else that needs the CPU should yield to it. I've done some rather limited testing on this, especially when it comes to running the F@H client, and in particular the GPU client, while gaming. Without the GPU client, the system tends to be more stable, but there's a lot of fluctation in the CPU testing data that makes it hard to derive any sort of reasonable conclusion.

My advice would be the best thing for you to do is to do a run a COMSOL case and see if you run into any issues with the F@H client. If you run into them, and you run into them often enough that it will either prevent you from running COMSOL or running it so slowly that it makes COMSOL practically useless, then you'll have your answer.

If it is noticable, but not significant enough, or if isn't even barely noticable, then obviously there's no harm in running the F@H client.

(Keep in mind that it is possible that the F@H will cause a competition in computing resources, so it all depends.)

Only way to find out for sure is to test it.

My personal preference is to NOT have anything F@H related running while I'm doing any kind of simulation stuff.