Code: Select all
[07:55:24] Connecting to http://171.64.65.56:8080/
[07:57:44] Posted data.
[07:57:44] Initial: 0000; - Uploaded at ~37 kB/s
[07:57:46] - Averaged speed for that direction ~38 kB/s
[07:57:46] + Results successfully sent
[07:57:46] Thank you for your contribution to Folding@Home.
[07:57:46] + Number of Units Completed: 21
[0]0:Return code = 18
[0]1:Return code = 0, signaled with Quit
[0]2:Return code = 0, signaled with Quit
[0]3:Return code = 18
[08:01:56] - Warning: Could not delete all work unit files (6): Core returned invalid code
[08:01:56] Trying to send all finished work units
[08:01:56] + No unsent completed units remaining.
[08:01:56] - Preparing to get new work unit...
[08:01:56] + Attempting to get work packet
[08:01:56] - Will indicate memory of 2012 MB
[08:01:56] - Connecting to assignment server
[08:01:56] Connecting to http://assign.stanford.edu:8080/
[08:01:56] Posted data.
[08:01:56] Initial: 40AB; - Successful: assigned to (171.64.65.56).
[08:01:56] + News From Folding@Home: Welcome to Folding@Home
[08:01:56] Loaded queue successfully.
[08:01:56] Connecting to http://171.64.65.56:8080/
[08:01:59] Posted data.
[08:01:59] Initial: 0000; - Receiving payload (expected size: 2944241)
[08:02:17] - Downloaded at ~159 kB/s
[08:02:17] - Averaged speed for that direction ~155 kB/s
[08:02:17] + Received work.
[08:02:17] Trying to send all finished work units
[08:02:17] + No unsent completed units remaining.
[08:02:17] + Closed connections
[08:02:17]
[08:02:17] + Processing work unit
[08:02:17] Core required: FahCore_a1.exe
[08:02:17] Core found.
[08:02:18] Working on Unit 07 [December 15 08:02:18]
[08:02:18] + Working ...
[08:02:18] - Calling './mpiexec -np 4 -host 127.0.0.1 ./FahCore_a1.exe -dir work/ -suffix 07 -checkpoint 15 -verbose -lifeline 3503 -version 600'
[08:02:18]
[08:02:18] *------------------------------*
[08:02:18] Folding@Home Gromacs SMP Core
[08:02:18] Version 1.74 (November 27, 2006)
[08:02:18]
[08:02:18] Preparing to commence simulation
[08:02:18] - Ensuring status. Please wait.
[08:02:18] Created dyn
[08:02:18] - Files status OK
[08:02:18] - Expanded 2943729 -> 15158509 (decompressed 514.9 percent)
[08:02:19] - Starting from initial work packet
[08:02:19]
[08:02:19] Project: 2604 (Run 0, Clone 546, Gen 23)
[08:02:19]
[08:02:19] Assembly optimizations on if available.
[08:02:19] Entering M.D.
[08:02:36] percent)
[08:02:36] - Starting from initial work packet
[08:02:36]
[08:02:36] Project: 2604 (Run 0, Clone 546, Gen 23)
[08:02:36]
[08:02:36] Entering M.D.
NNODES=4, MYRANK=0, HOSTNAME=localhost.localdomain
NNODES=4, MYRANK=2, HOSTNAME=localhost.localdomain
NNODES=4, MYRANK=1, HOSTNAME=localhost.localdomain
NNODES=4, MYRANK=3, HOSTNAME=localhost.localdomain
NODEID=1 argc=15
NODEID=2 argc=15
NODEID=3 argc=15
NODEID=0 argc=15
Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2004, The GROMACS development team,
check out http://www.gromacs.org for more information.
This inclusion of Gromacs code in the Folding@Home Core is under
a special license (see http://folding.stanford.edu/gromacs.html)
specially granted to Stanford by the copyright holders. If you
are interested in using Gromacs, visit http://www.gromacs.org where
you can download a free version of Gromacs under
the terms of the GNU General Public License (GPL) as published
by the Free Software Foundation; either version 2 of the License,
or (at your option) any later version.
[08:02:43] Protein: Protein in POPC
[08:02:43] Writing local files
starting mdrun 'Protein in POPC'
500000 steps, 1000.0 ps.
[08:02:43] Extra SSE boost OK.
[08:02:44] e Shutdown: INTERRUPTED
[cli_3]: aborting job:
Fatal error in MPI_Sendrecv: Error message texts are not available
[0]0:Return code = 0, signaled with Segmentation fault
[0]1:Return code = 0, signaled with Segmentation fault
[0]2:Return code = 0, signaled with Segmentation fault
[0]3:Return code = 1
[08:02:48] CoreStatus = 1 (1)
[08:02:48] Client-core communications error: ERROR 0x1
[08:02:48] Deleting current work unit & continuing...
[0]0:Return code = 0, signaled with Quit
[0]1:Return code = 18
[0]2:Return code = 0, signaled with Quit
[0]3:Return code = 0, signaled with Quit
[08:07:09] - Warning: Could not delete all work unit files (7): Core returned invalid code
[08:07:09] Trying to send all finished work units
[08:07:09] + No unsent completed units remaining.
[08:07:09] - Preparing to get new work unit...
[08:07:09] + Attempting to get work packet
[08:07:09] - Will indicate memory of 2012 MB
[08:07:09] - Connecting to assignment server
[08:07:09] Connecting to http://assign.stanford.edu:8080/
[08:07:09] Posted data.
[08:07:09] Initial: 40AB; - Successful: assigned to (171.64.65.56).
[08:07:09] + News From Folding@Home: Welcome to Folding@Home
[08:07:10] Loaded queue successfully.
[08:07:10] Connecting to http://171.64.65.56:8080/
[08:07:12] Posted data.
[08:07:12] Initial: 0000; - Receiving payload (expected size: 2944241)
[08:07:31] - Downloaded at ~151 kB/s
[08:07:31] - Averaged speed for that direction ~154 kB/s
[08:07:31] + Received work.
[08:07:31] + Closed connections
[08:07:36]
[08:07:36] + Processing work unit
[08:07:36] Core required: FahCore_a1.exe
[08:07:36] Core found.
[08:07:36] Working on Unit 08 [December 15 08:07:36]
[08:07:36] + Working ...
[08:07:36] - Calling './mpiexec -np 4 -host 127.0.0.1 ./FahCore_a1.exe -dir work/ -suffix 08 -checkpoint 15 -verbose -lifeline 3503 -version 600'
[08:07:36]
[08:07:36] *------------------------------*
[08:07:36] Folding@Home Gromacs SMP Core
[08:07:36] Version 1.74 (November 27, 2006)
[08:07:36]
[08:07:36] Preparing to commence simulation
[08:07:36] - Ensuring status. Please wait.
[08:07:53] - Looking at optimizations...
[08:07:53] - Working with standard loops on this execution.
[08:07:53] - Previous termination of core was improper.
[08:07:53] - Going to use standard loops.
[08:07:53] - Files status OK
[08:07:54] (decompressed 514.9 percent)
[08:07:54] 9 (decompressed 514.9 percent)
[08:07:55] ne 54
[08:07:55] Project: 2604 (Run 0, Clone 546, Gen 23 2604 (Run 0, Clone 546, Gen 23)
[08:07:55]
[08:07:55] Entering M.D.
NNODES=4, MYRANK=2, HOSTNAME=localhost.localdomain
NNODES=4, MYRANK=0, HOSTNAME=localhost.localdomain
NNODES=4, MYRANK=1, HOSTNAME=localhost.localdomain
NNODES=4, MYRANK=3, HOSTNAME=localhost.localdomain
NODEID=2 argc=15
NODEID=3 argc=15
NODEID=0 argc=15
NODEID=1 argc=15
Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2004, The GROMACS development team,
check out http://www.gromacs.org for more information.
This inclusion of Gromacs code in the Folding@Home Core is under
a special license (see http://folding.stanford.edu/gromacs.html)
specially granted to Stanford by the copyright holders. If you
are interested in using Gromacs, visit http://www.gromacs.org where
you can download a free version of Gromacs under
the terms of the GNU General Public License (GPL) as published
by the Free Software Foundation; either version 2 of the License,
or (at your option) any later version.
starting mdrun 'Protein in POPC'
500000 steps, 1000.0 ps.
[08:08:02] rotein in POPC
[08:08:02] Writing local files
[08:08:02] cal files
[08:08:02] boost OK.
[08:08:02] Writing local files
[08:08:03] output
[08:08:03] d 0 out of 500000 steps (0 percent)
[08:08:03]
[08:08:03] Folding@home Core Shutdown: INTERRUPTED
[0]0:Return code = 102
[0]1:Return code = 0, signaled with Segmentation fault
[0]2:Return code = 0, signaled with Segmentation fault
[0]3:Return code = 0, signaled with Quit
[08:08:07] CoreStatus = 66 (102)
[08:08:07] + Shutdown requested by user. Exiting.***** Got a SIGTERM signal (15)
[08:08:07] Killing all core threads
Folding@Home Client Shutdown.
[jim@localhost fold]$
any other problems with this wu?