Project: 2671 (Run 43, Clone 46, Gen 43) seg fault

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alpha754293
Posts: 383
Joined: Sun Jan 18, 2009 1:13 am

Project: 2671 (Run 43, Clone 46, Gen 43) seg fault

Post by alpha754293 »

log:

Code: Select all

[16:09:04] 
[16:09:04] *------------------------------*
[16:09:04] Folding@Home Gromacs SMP Core
[16:09:04] Version 2.07 (Sun Apr 19 14:51:09 PDT 2009)
[16:09:04] 
[16:09:04] Preparing to commence simulation
[16:09:04] - Ensuring status. Please wait.
[16:09:05] Called DecompressByteArray: compressed_data_size=4839885 data_size=24005045, decompressed_data_size=24005045 diff=0
[16:09:05] - Digital signature verified
[16:09:05] 
[16:09:05] Project: 2671 (Run 43, Clone 46, Gen 43)
[16:09:05] 
[16:09:06] Assembly optimizations on if available.
[16:09:06] Entering M.D.
[16:09:15] Run 43, Clone 46, Gen 43)
[16:09:15] 
[16:09:15] Entering M.D.
NNODES=8, MYRANK=1, HOSTNAME=computenode
NNODES=8, MYRANK=2, HOSTNAME=computenode
NNODES=8, MYRANK=4, HOSTNAME=computenode
NNODES=8, MYRANK=0, HOSTNAME=computenode
NNODES=8, MYRANK=5, HOSTNAME=computenode
NNODES=8, MYRANK=6, HOSTNAME=computenode
NNODES=8, MYRANK=7, HOSTNAME=computenode
NNODES=8, MYRANK=3, HOSTNAME=computenode
NODEID=0 argc=20
NODEID=1 argc=20
NODEID=4 argc=20
NODEID=5 argc=20
NODEID=2 argc=20
                         :-)  G  R  O  M  A  C  S  (-:

NODEID=3 argc=20
                   Groningen Machine for Chemical Simulation

                 :-)  VERSION 4.0.99_development_20090307  (-:


      Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
       Copyright (c) 1991-2000, University of Groningen, The Netherlands.
             Copyright (c) 2001-2008, The GROMACS development team,
            check out http://www.gromacs.org for more information.


                                :-)  mdrun  (-:

Reading file work/wudata_07.tpr, VERSION 3.3.99_development_20070618 (single precision)
NODEID=6 argc=20
NODEID=7 argc=20
Note: tpx file_version 48, software version 64

NOTE: The tpr file used for this simulation is in an old format, for less memory usage and possibly more performance create a new tpr file with an up to date version of grompp

Making 3D domain decomposition 2 x 2 x 2
starting mdrun '22866 system in water'
11000000 steps,  22000.0 ps (continuing from step 10750000,  21500.0 ps).
[16:13:51] pleted 2500 out of 250000 steps  (1%)
[16:18:18] Completed 5000 out of 250000 steps  (2%)
[16:22:45] Completed 7500 out of 250000 steps  (3%)
[16:27:12] Completed 10000 out of 250000 steps  (4%)
[16:31:39] Completed 12500 out of 250000 steps  (5%)
[16:36:07] Completed 15000 out of 250000 steps  (6%)
[16:40:34] Completed 17500 out of 250000 steps  (7%)
[16:45:01] Completed 20000 out of 250000 steps  (8%)
[16:49:27] Completed 22500 out of 250000 steps  (9%)
[16:53:53] Completed 25000 out of 250000 steps  (10%)
[16:58:19] Completed 27500 out of 250000 steps  (11%)
[17:02:46] Completed 30000 out of 250000 steps  (12%)
[17:07:12] Completed 32500 out of 250000 steps  (13%)
[17:11:39] Completed 35000 out of 250000 steps  (14%)
[17:16:06] Completed 37500 out of 250000 steps  (15%)
[17:20:33] Completed 40000 out of 250000 steps  (16%)
[17:25:00] Completed 42500 out of 250000 steps  (17%)
[17:29:26] Completed 45000 out of 250000 steps  (18%)
[17:33:54] Completed 47500 out of 250000 steps  (19%)
[17:38:21] Completed 50000 out of 250000 steps  (20%)
[17:42:48] Completed 52500 out of 250000 steps  (21%)
[17:47:15] Completed 55000 out of 250000 steps  (22%)
[17:51:43] Completed 57500 out of 250000 steps  (23%)
[17:56:11] Completed 60000 out of 250000 steps  (24%)
[18:00:38] Completed 62500 out of 250000 steps  (25%)
[18:05:05] Completed 65000 out of 250000 steps  (26%)
[18:09:34] Completed 67500 out of 250000 steps  (27%)
[18:14:02] Completed 70000 out of 250000 steps  (28%)
[18:18:30] Completed 72500 out of 250000 steps  (29%)
[18:22:58] Completed 75000 out of 250000 steps  (30%)
[18:27:24] Completed 77500 out of 250000 steps  (31%)
[18:31:50] Completed 80000 out of 250000 steps  (32%)
[18:36:16] Completed 82500 out of 250000 steps  (33%)
[18:40:43] Completed 85000 out of 250000 steps  (34%)
[18:45:10] Completed 87500 out of 250000 steps  (35%)
[18:49:36] Completed 90000 out of 250000 steps  (36%)
[18:54:03] Completed 92500 out of 250000 steps  (37%)
[18:58:29] Completed 95000 out of 250000 steps  (38%)
[19:02:55] Completed 97500 out of 250000 steps  (39%)
[19:07:22] Completed 100000 out of 250000 steps  (40%)
[19:11:49] Completed 102500 out of 250000 steps  (41%)
[19:16:17] Completed 105000 out of 250000 steps  (42%)
[19:20:44] Completed 107500 out of 250000 steps  (43%)
[19:25:13] Completed 110000 out of 250000 steps  (44%)
[19:29:40] Completed 112500 out of 250000 steps  (45%)
[19:34:08] Completed 115000 out of 250000 steps  (46%)
[19:38:34] Completed 117500 out of 250000 steps  (47%)
[19:43:01] Completed 120000 out of 250000 steps  (48%)
[19:47:30] Completed 122500 out of 250000 steps  (49%)
[19:51:57] Completed 125000 out of 250000 steps  (50%)
[19:56:24] Completed 127500 out of 250000 steps  (51%)
[19:57:15] 
[19:57:15] Folding@home Core Shutdown: INTERRUPTED
[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 102) - process 0
[cli_3]: aborting job:
Fatal error in MPI_Sendrecv: Error message texts are not available
[cli_6]: aborting job:
Fatal error in MPI_Sendrecv: Error message texts are not available
[0]0:Return code = 102
[0]1:Return code = 0, signaled with Quit
[0]2:Return code = 0, signaled with Segmentation fault
[0]3:Return code = 1
[0]4:Return code = 0, signaled with Quit
[0]5:Return code = 0, signaled with Quit
[0]6:Return code = 1
[0]7:Return code = 0, signaled with Quit
[19:57:23] CoreStatus = 66 (102)
[19:57:23] + Shutdown requested by user. Exiting.***** Got a SIGTERM signal (15)
[19:57:23] Killing all core threads

Folding@Home Client Shutdown.
restarting client...
susato
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Re: Project: 2671 (Run 43, Clone 46, Gen 43) seg fault

Post by susato »

Let us know how it turns out - Thanks.
alpha754293
Posts: 383
Joined: Sun Jan 18, 2009 1:13 am

Re: Project: 2671 (Run 43, Clone 46, Gen 43) seg fault

Post by alpha754293 »

susato wrote:Let us know how it turns out - Thanks.
WU completed on second attempt.

Code: Select all

[23:41:55] Project: 2671 (Run 43, Clone 46, Gen 43)


[23:41:55] + Attempting to send results [June 7 23:41:55 UTC]
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