Project: 2671 (Run 29, Clone 47, Gen 15) seg fault

alpha754293 · Post by **alpha754293** » Sun Apr 26, 2009 7:23 pm

console:

[10:41:54]
[10:41:54] *------------------------------*
[10:41:54] Folding@Home Gromacs SMP Core
[10:41:54] Version 2.07 (Sun Apr 19 14:51:09 PDT 2009)
[10:41:54]
[10:41:54] Preparing to commence simulation
[10:41:54] - Ensuring status. Please wait.
[10:41:55] Called DecompressByteArray: compressed_data_size=4835753 data_size=24
034317, decompressed_data_size=24034317 diff=0
[10:41:55] - Digital signature verified
[10:41:55]
[10:41:55] Project: 2671 (Run 29, Clone 47, Gen 15)
[10:41:55]
[10:41:56] Assembly optimizations on if available.
[10:41:56] Entering M.D.
[10:42:05] Run 29, Clone 47, Gen 15)
[10:42:05]
[10:42:05] Entering M.D.
NNODES=4, MYRANK=2, HOSTNAME=computenode
NNODES=4, MYRANK=0, HOSTNAME=computenode
NNODES=4, MYRANK=3, HOSTNAME=computenode
NNODES=4, MYRANK=1, HOSTNAME=computenode
NODEID=2 argc=20
NODEID=0 argc=20
NODEID=1 argc=20
                         :-)  G  R  O  M  A  C  S  (-:

                   Groningen Machine for Chemical Simulation

                 :-)  VERSION 4.0.99_development_20090307  (-:


      Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
       Copyright (c) 1991-2000, University of Groningen, The Netherlands.
             Copyright (c) 2001-2008, The GROMACS development team,
            check out http://www.gromacs.org for more information.


                                :-)  mdrun  (-:

Reading file work/wudata_00.tpr, VERSION 3.3.99_development_20070618 (single pre
cision)
NODEID=3 argc=20
Note: tpx file_version 48, software version 64

NOTE: The tpr file used for this simulation is in an old format, for less memory
 usage and possibly more performance create a new tpr file with an up to date ve
rsion of grompp

Making 1D domain decomposition 1 x 1 x 4
starting mdrun '22911 system in water'
4000000 steps,   8000.0 ps (continuing from step 3750000,   7500.0 ps).
[10:50:52] pleted 2500 out of 250000 steps  (1%)
[10:59:33] Completed 5000 out of 250000 steps  (2%)
[11:08:17] Completed 7500 out of 250000 steps  (3%)
[11:17:00] Completed 10000 out of 250000 steps  (4%)
[11:25:44] Completed 12500 out of 250000 steps  (5%)
[11:34:27] Completed 15000 out of 250000 steps  (6%)
[11:43:11] Completed 17500 out of 250000 steps  (7%)
[11:51:55] Completed 20000 out of 250000 steps  (8%)
[12:00:38] Completed 22500 out of 250000 steps  (9%)
[12:09:21] Completed 25000 out of 250000 steps  (10%)
[12:18:05] Completed 27500 out of 250000 steps  (11%)
[12:26:47] Completed 30000 out of 250000 steps  (12%)
[12:35:29] Completed 32500 out of 250000 steps  (13%)
[12:44:09] Completed 35000 out of 250000 steps  (14%)
[12:52:54] Completed 37500 out of 250000 steps  (15%)
[13:01:37] Completed 40000 out of 250000 steps  (16%)
[13:10:20] Completed 42500 out of 250000 steps  (17%)
[13:19:02] Completed 45000 out of 250000 steps  (18%)
[13:27:44] Completed 47500 out of 250000 steps  (19%)
[13:36:30] Completed 50000 out of 250000 steps  (20%)
[13:45:16] Completed 52500 out of 250000 steps  (21%)
[13:45:33] - Autosending finished units... [April 26 13:45:33 UTC]
[13:45:33] Trying to send all finished work units
[13:45:33] + No unsent completed units remaining.
[13:45:33] - Autosend completed
[13:54:02] Completed 55000 out of 250000 steps  (22%)
[14:02:49] Completed 57500 out of 250000 steps  (23%)
[14:11:35] Completed 60000 out of 250000 steps  (24%)
[14:20:22] Completed 62500 out of 250000 steps  (25%)
[14:29:06] Completed 65000 out of 250000 steps  (26%)
[14:37:53] Completed 67500 out of 250000 steps  (27%)
[14:46:39] Completed 70000 out of 250000 steps  (28%)
[14:55:23] Completed 72500 out of 250000 steps  (29%)
[15:04:08] Completed 75000 out of 250000 steps  (30%)
[15:12:51] Completed 77500 out of 250000 steps  (31%)
[15:21:38] Completed 80000 out of 250000 steps  (32%)
[15:30:25] Completed 82500 out of 250000 steps  (33%)
[15:39:08] Completed 85000 out of 250000 steps  (34%)
[15:47:52] Completed 87500 out of 250000 steps  (35%)
[15:56:35] Completed 90000 out of 250000 steps  (36%)
[16:05:19] Completed 92500 out of 250000 steps  (37%)
[16:14:01] Completed 95000 out of 250000 steps  (38%)
[16:22:43] Completed 97500 out of 250000 steps  (39%)
[16:31:25] Completed 100000 out of 250000 steps  (40%)
[16:40:10] Completed 102500 out of 250000 steps  (41%)
[16:48:55] Completed 105000 out of 250000 steps  (42%)
[16:57:40] Completed 107500 out of 250000 steps  (43%)
[17:06:24] Completed 110000 out of 250000 steps  (44%)
[17:15:10] Completed 112500 out of 250000 steps  (45%)
[17:23:55] Completed 115000 out of 250000 steps  (46%)
[17:32:40] Completed 117500 out of 250000 steps  (47%)
[17:41:25] Completed 120000 out of 250000 steps  (48%)
[17:50:10] Completed 122500 out of 250000 steps  (49%)
[17:58:55] Completed 125000 out of 250000 steps  (50%)
[18:07:40] Completed 127500 out of 250000 steps  (51%)
[18:16:25] Completed 130000 out of 250000 steps  (52%)
[18:25:10] Completed 132500 out of 250000 steps  (53%)
[18:33:55] Completed 135000 out of 250000 steps  (54%)
[18:42:40] Completed 137500 out of 250000 steps  (55%)
[18:51:26] Completed 140000 out of 250000 steps  (56%)
[19:00:12] Completed 142500 out of 250000 steps  (57%)
[19:01:57]
[19:01:57] Folding@home Core Shutdown: INTERRUPTED
[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 102) - process 0
[cli_3]: aborting job:
Fatal error in MPI_Sendrecv: Error message texts are not available
[0]0:Return code = 102
[0]1:Return code = 0, signaled with Quit
[0]2:Return code = 0, signaled with Segmentation fault
[0]3:Return code = 1
[19:02:02] CoreStatus = 66 (102)
[19:02:02] + Shutdown requested by user. Exiting.***** Got a SIGTERM signal (15)
[19:02:02] Killing all core threads

Folding@Home Client Shutdown.

FAHlog:

Code: Select all

[10:41:54] 
[10:41:54] *------------------------------*
[10:41:54] Folding@Home Gromacs SMP Core
[10:41:54] Version 2.07 (Sun Apr 19 14:51:09 PDT 2009)
[10:41:54] 
[10:41:54] Preparing to commence simulation
[10:41:54] - Ensuring status. Please wait.
[10:41:55] Called DecompressByteArray: compressed_data_size=4835753 data_size=24034317, decompressed_data_size=24034317 diff=0
[10:41:55] - Digital signature verified
[10:41:55] 
[10:41:55] Project: 2671 (Run 29, Clone 47, Gen 15)
[10:41:55] 
[10:41:56] Assembly optimizations on if available.
[10:41:56] Entering M.D.
[10:42:05] Run 29, Clone 47, Gen 15)
[10:42:05] 
[10:42:05] Entering M.D.
[10:50:52] pleted 2500 out of 250000 steps  (1%)
[10:59:33] Completed 5000 out of 250000 steps  (2%)
[11:08:17] Completed 7500 out of 250000 steps  (3%)
[11:17:00] Completed 10000 out of 250000 steps  (4%)
[11:25:44] Completed 12500 out of 250000 steps  (5%)
[11:34:27] Completed 15000 out of 250000 steps  (6%)
[11:43:11] Completed 17500 out of 250000 steps  (7%)
[11:51:55] Completed 20000 out of 250000 steps  (8%)
[12:00:38] Completed 22500 out of 250000 steps  (9%)
[12:09:21] Completed 25000 out of 250000 steps  (10%)
[12:18:05] Completed 27500 out of 250000 steps  (11%)
[12:26:47] Completed 30000 out of 250000 steps  (12%)
[12:35:29] Completed 32500 out of 250000 steps  (13%)
[12:44:09] Completed 35000 out of 250000 steps  (14%)
[12:52:54] Completed 37500 out of 250000 steps  (15%)
[13:01:37] Completed 40000 out of 250000 steps  (16%)
[13:10:20] Completed 42500 out of 250000 steps  (17%)
[13:19:02] Completed 45000 out of 250000 steps  (18%)
[13:27:44] Completed 47500 out of 250000 steps  (19%)
[13:36:30] Completed 50000 out of 250000 steps  (20%)
[13:45:16] Completed 52500 out of 250000 steps  (21%)
[13:45:33] - Autosending finished units... [April 26 13:45:33 UTC]
[13:45:33] Trying to send all finished work units
[13:45:33] + No unsent completed units remaining.
[13:45:33] - Autosend completed
[13:54:02] Completed 55000 out of 250000 steps  (22%)
[14:02:49] Completed 57500 out of 250000 steps  (23%)
[14:11:35] Completed 60000 out of 250000 steps  (24%)
[14:20:22] Completed 62500 out of 250000 steps  (25%)
[14:29:06] Completed 65000 out of 250000 steps  (26%)
[14:37:53] Completed 67500 out of 250000 steps  (27%)
[14:46:39] Completed 70000 out of 250000 steps  (28%)
[14:55:23] Completed 72500 out of 250000 steps  (29%)
[15:04:08] Completed 75000 out of 250000 steps  (30%)
[15:12:51] Completed 77500 out of 250000 steps  (31%)
[15:21:38] Completed 80000 out of 250000 steps  (32%)
[15:30:25] Completed 82500 out of 250000 steps  (33%)
[15:39:08] Completed 85000 out of 250000 steps  (34%)
[15:47:52] Completed 87500 out of 250000 steps  (35%)
[15:56:35] Completed 90000 out of 250000 steps  (36%)
[16:05:19] Completed 92500 out of 250000 steps  (37%)
[16:14:01] Completed 95000 out of 250000 steps  (38%)
[16:22:43] Completed 97500 out of 250000 steps  (39%)
[16:31:25] Completed 100000 out of 250000 steps  (40%)
[16:40:10] Completed 102500 out of 250000 steps  (41%)
[16:48:55] Completed 105000 out of 250000 steps  (42%)
[16:57:40] Completed 107500 out of 250000 steps  (43%)
[17:06:24] Completed 110000 out of 250000 steps  (44%)
[17:15:10] Completed 112500 out of 250000 steps  (45%)
[17:23:55] Completed 115000 out of 250000 steps  (46%)
[17:32:40] Completed 117500 out of 250000 steps  (47%)
[17:41:25] Completed 120000 out of 250000 steps  (48%)
[17:50:10] Completed 122500 out of 250000 steps  (49%)
[17:58:55] Completed 125000 out of 250000 steps  (50%)
[18:07:40] Completed 127500 out of 250000 steps  (51%)
[18:16:25] Completed 130000 out of 250000 steps  (52%)
[18:25:10] Completed 132500 out of 250000 steps  (53%)
[18:33:55] Completed 135000 out of 250000 steps  (54%)
[18:42:40] Completed 137500 out of 250000 steps  (55%)
[18:51:26] Completed 140000 out of 250000 steps  (56%)
[19:00:12] Completed 142500 out of 250000 steps  (57%)
[19:01:57] 
[19:01:57] Folding@home Core Shutdown: INTERRUPTED
[19:02:02] CoreStatus = 66 (102)
[19:02:02] + Shutdown requested by user. Exiting.***** Got a SIGTERM signal (15)
[19:02:02] Killing all core threads

Folding@Home Client Shutdown.

restarting client...

Post by **toTOW** » Sun Apr 26, 2009 8:42 pm

I don't know why you got this WU, but another donor was able to complete is successfully on 2009-04-26 08:11:43 ...

alpha754293 · Post by **alpha754293** » Sun Apr 26, 2009 10:53 pm

toTOW wrote:I don't know why you got this WU, but another donor was able to complete is successfully on 2009-04-26 08:11:43 ...

Is that 08:11:43 UTC?

Cuz picked up the unit Apr 26 05:41 EST 2009 (or Apr 26 10:41 UTC 2009).

Post by **bruce** » Mon Apr 27, 2009 5:50 am

alpha754293 wrote:Is that 08:11:43 UTC?

Cuz picked up the unit Apr 26 05:41 EST 2009 (or Apr 26 10:41 UTC 2009).

No, the times reported by the Stanford servers are not UTC

but rather PST/PDT which is currently PDT = UTC-7.

Both of you have received credit for this WU.

Hi xxxx (team xx),
Your WU (P2671 R29 C47 G15) was added to the stats database on 2009-04-26 08:11:43 for 1920 points of credit.

Hi alpha754293 (team 596),
Your WU (P2671 R29 C47 G15) was added to the stats database on 2009-04-26 20:09:23 for 1920 points of credit

alpha754293 · Post by **alpha754293** » Mon Apr 27, 2009 7:53 am

bruce wrote:
alpha754293 wrote:Is that 08:11:43 UTC?

Cuz picked up the unit Apr 26 05:41 EST 2009 (or Apr 26 10:41 UTC 2009).
No, the times reported by the Stanford servers are not UTC but rather PST/PDT which is currently PDT = UTC-7.

Both of you have received credit for this WU.

Hi xxxx (team xx),
Your WU (P2671 R29 C47 G15) was added to the stats database on 2009-04-26 08:11:43 for 1920 points of credit.

Hi alpha754293 (team 596),
Your WU (P2671 R29 C47 G15) was added to the stats database on 2009-04-26 20:09:23 for 1920 points of credit

hmm...that's interesting because I think that the consoles uses UTC. Oh well.

Folding Forum

Project: 2671 (Run 29, Clone 47, Gen 15) seg fault

Project: 2671 (Run 29, Clone 47, Gen 15) seg fault

Re: Project: 2671 (Run 29, Clone 47, Gen 15) seg fault

Re: Project: 2671 (Run 29, Clone 47, Gen 15) seg fault

Re: Project: 2671 (Run 29, Clone 47, Gen 15) seg fault

Re: Project: 2671 (Run 29, Clone 47, Gen 15) seg fault