4433 (R37, C3, G19) impossible run time.

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Macaholic
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4433 (R37, C3, G19) impossible run time.

Post by Macaholic »

Thought you might be interested in the output. I gave it restart, to no avail. Machine specs and output below.

Mac Mini C2D 2.0GHz, 2 x 256MB RAM, OS 10.4.8;

Code: Select all

[22:35:53] *------------------------------*
[22:35:53] Folding@Home Gromacs SMP Core
[22:35:53] Version 2.01 (Wed Jul 16 08:26:53 PDT 2008)
[22:35:53] 
[22:35:53] Preparing to commence simulation
[22:35:53] - Ensuring status. Please wait.
[22:36:02] - Assembly optimizations manually forced on.
[22:36:02] - Not checking prior termination.
[22:36:03] - Expanded 229119 -> 1114469 (decompressed 486.4 percent)
[22:36:03] Called DecompressByteArray: compressed_data_size=229119 data_size=1114469, decompressed_data_size=1114469 diff=0
[22:36:03] - Digital signature verified
[22:36:03] 
[22:36:03] Project: 4433 (Run 37, Clone 3, Gen 19)
[22:36:03] 
[22:36:03] Assembly optimizations on if available.
[22:36:03] Entering M.D.
NNODES=4, MYRANK=1, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NNODES=4, MYRANK=2, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NNODES=4, MYRANK=0, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NNODES=4, MYRANK=3, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NODEID=0 argc=19
                         :-)  G  R  O  M  A  C  S  (-:

                   Groningen Machine for Chemical Simulation

                 :-)  VERSION 3.3.99_development_200800503  (-:


      Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
       Copyright (c) 1991-2000, University of Groningen, The Netherlands.
             Copyright (c) 2001-2008, The GROMACS development team,
            check out http://www.gromacs.org for more information.


                                :-)  mdrun  (-:

NODEID=1 argc=19
NODEID=2 argc=19
NODEID=3 argc=19
Reading file work/wudata_04.tpr, VERSION 3.3.99_development_20080208 (single precision)
Note: tpx file_version 54, software version 56
[22:36:09] Node 3 initialized
Making 1D domain decomposition 4 x 1 x 1
starting mdrun 'Protein in water'
44999996 steps,  90000.0 ps.

Writing checkpoint, step 5026800 at Sat Feb 21 16:51:10 2009

Writing checkpoint, step 5053690 at Sat Feb 21 17:06:10 2009

Writing checkpoint, step 5080570 at Sat Feb 21 17:21:10 2009

Writing checkpoint, step 5107390 at Sat Feb 21 17:36:10 2009

Writing checkpoint, step 5134060 at Sat Feb 21 17:51:10 2009

Writing checkpoint, step 5160840 at Sat Feb 21 18:06:10 2009

Writing checkpoint, step 5187590 at Sat Feb 21 18:21:10 2009

Writing checkpoint, step 5214360 at Sat Feb 21 18:36:10 2009

Writing checkpoint, step 5241100 at Sat Feb 21 18:51:10 2009

Writing checkpoint, step 5267810 at Sat Feb 21 19:06:10 2009

Writing checkpoint, step 5294530 at Sat Feb 21 19:21:10 2009

Writing checkpoint, step 5321260 at Sat Feb 21 19:36:10 2009

Writing checkpoint, step 5347910 at Sat Feb 21 19:51:10 2009

Writing checkpoint, step 5374550 at Sat Feb 21 20:06:10 2009

Writing checkpoint, step 5401190 at Sat Feb 21 20:21:10 2009

Writing checkpoint, step 5427870 at Sat Feb 21 20:36:10 2009
[02:48:37] Completed 450000 out of 44999996 steps  (1%)

Writing checkpoint, step 5454530 at Sat Feb 21 20:51:10 2009

Writing checkpoint, step 5481190 at Sat Feb 21 21:06:10 2009

Writing checkpoint, step 5507830 at Sat Feb 21 21:21:10 2009

Writing checkpoint, step 5534640 at Sat Feb 21 21:36:10 2009

Writing checkpoint, step 5561560 at Sat Feb 21 21:51:10 2009

Writing checkpoint, step 5588460 at Sat Feb 21 22:06:10 2009

Writing checkpoint, step 5615360 at Sat Feb 21 22:21:10 2009
[04:33:20] - Autosending finished units... [February 22 04:33:20 UTC]
[04:33:20] Trying to send all finished work units
[04:33:20] + No unsent completed units remaining.
[04:33:20] - Autosend completed

Writing checkpoint, step 5642180 at Sat Feb 21 22:36:10 2009

Writing checkpoint, step 5669210 at Sat Feb 21 22:51:10 2009
^C[05:02:37] ***** Got an Activate signal (2)
[05:02:37] Killing all core threads

Folding@Home Client Shutdown.
Mac-mini-Core-2-Duo-2-0GHz-1:~/FAH macaholicg5$ [0]0:Return code = 102
[0]1:Return code = 0, signaled with Quit
[0]2:Return code = 0, signaled with Quit
[0]3:Return code = 0, signaled with Quit
rbosity 9ocal -smp -forceasm -ve 
Using local directory for configuration

Note: Please read the license agreement (fah6 -license). Further 
use of this software requires that you have read and accepted this agreement.

Using local directory for work files
2 cores detected


--- Opening Log file [February 22 05:08:37 UTC] 


# Mac OS X SMP Console Edition ################################################
###############################################################################

                       Folding@Home Client Version 6.24beta

                          http://folding.stanford.edu

###############################################################################
###############################################################################

Launch directory: /Users/macaholicg5/FAH
Executable: ./fah6
Arguments: -local -smp -forceasm -verbosity 9 

[05:08:37] - Ask before connecting: No
[05:08:37] - User name: Christian_Bargmann (Team 1971)
[05:08:37] - User ID: 3252A8973067851A
[05:08:37] - Machine ID: 1
[05:08:37] 
[05:08:37] Loaded queue successfully.
[05:08:37] 
[05:08:37] + Processing work unit
[05:08:37] At least 4 processors must be requested.Core required: FahCore_a2.exe
[05:08:37] Core found.
[05:08:37] - Autosending finished units... [February 22 05:08:37 UTC]
[05:08:37] - Using generic ./mpiexec
[05:08:37] Trying to send all finished work units
[05:08:37] + No unsent completed units remaining.
[05:08:37] - Autosend completed
[05:08:37] Working on queue slot 04 [February 22 05:08:37 UTC]
[05:08:37] + Working ...
[05:08:37] - Calling './mpiexec -np 4 -host 127.0.0.1 ./FahCore_a2.exe -dir work/ -suffix 04 -checkpoint 15 -forceasm -verbose -lifeline 4077 -version 624'

[05:08:37] 
[05:08:37] *------------------------------*
[05:08:37] Folding@Home Gromacs SMP Core
[05:08:37] Version 2.01 (Wed Jul 16 08:26:53 PDT 2008)
[05:08:37] 
[05:08:37] Preparing to commence simulation
[05:08:37] - Ensuring status. Please wait.
[05:08:37] Called DecompressByteArray: compressed_data_size=229119 data_size=1114469, decompressed_data_size=1114469 diff=0
[05:08:37] - Digital signature verified
[05:08:37] 
[05:08:37] Project: 4433 (Run 37, Clone 3, Gen 19)
[05:08:37] 
[05:08:38] Assembly optimizations on if available.
[05:08:38] Entering M.D.
[05:08:43] Will resume from checkpoint file
NNODES=4, MYRANK=0, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NNODES=4, MYRANK=2, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NNODES=4, MYRANK=3, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NNODES=4, MYRANK=1, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NODEID=0 argc=19
                         :-)  G  R  O  M  A  C  S  (-:

NODEID=2 argc=19
                   Groningen Machine for Chemical Simulation

                 :-)  VERSION 3.3.99_development_200800503  (-:


      Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
       Copyright (c) 1991-2000, University of Groningen, The Netherlands.
             Copyright (c) 2001-2008, The GROMACS development team,
            check out http://www.gromacs.org for more information.


                                :-)  mdrun  (-:

NODEID=1 argc=19
NODEID=3 argc=19
Reading file work/wudata_04.tpr, VERSION 3.3.99_development_20080208 (single precision)
Note: tpx file_version 54, software version 56
[05:08:53] Node 2 initialized
[05:08:53] ckpoint file
[05:08:53] Node 1 initialized
Making 1D domain decomposition 4 x 1 x 1
starting mdrun 'Protein in water'
44999996 steps,  90000.0 ps.
[05:08:54] Resuming from checkpoint
[05:08:54] fcSaveRestoreState: I/O failed dir=0, var=00649000, varsize=51132
[05:08:54] Verified work/wudata_04.log
[05:08:54] Verified work/wudata_04.trr
[05:08:54] Verified work/wudata_04.xtc
[05:08:54] Verified work/wudata_04.edr
[05:08:54] Completed 450010 out of 44999996 steps  (1%)

Writing checkpoint, step 5476880 at Sat Feb 21 23:23:53 2009

Writing checkpoint, step 5503610 at Sat Feb 21 23:38:53 2009

Writing checkpoint, step 5530320 at Sat Feb 21 23:53:53 2009

Writing checkpoint, step 5556970 at Sun Feb 22 00:08:53 2009

Writing checkpoint, step 5583760 at Sun Feb 22 00:23:53 2009

Writing checkpoint, step 5610550 at Sun Feb 22 00:38:53 2009

Writing checkpoint, step 5637320 at Sun Feb 22 00:53:53 2009

Writing checkpoint, step 5664060 at Sun Feb 22 01:08:53 2009

Writing checkpoint, step 5690590 at Sun Feb 22 01:23:53 2009

Writing checkpoint, step 5717240 at Sun Feb 22 01:38:53 2009

Writing checkpoint, step 5743870 at Sun Feb 22 01:53:53 2009

Writing checkpoint, step 5770480 at Sun Feb 22 02:08:53 2009

Writing checkpoint, step 5797230 at Sun Feb 22 02:23:53 2009

Writing checkpoint, step 5823990 at Sun Feb 22 02:38:53 2009

Writing checkpoint, step 5850830 at Sun Feb 22 02:53:53 2009

Writing checkpoint, step 5877680 at Sun Feb 22 03:08:53 2009
[09:21:22] Completed 900000 out of 44999996 steps  (2%)

Writing checkpoint, step 5904520 at Sun Feb 22 03:23:53 2009

Writing checkpoint, step 5931390 at Sun Feb 22 03:38:53 2009

Writing checkpoint, step 5958280 at Sun Feb 22 03:53:53 2009

Writing checkpoint, step 5985140 at Sun Feb 22 04:08:53 2009

Writing checkpoint, step 6012060 at Sun Feb 22 04:23:53 2009

Writing checkpoint, step 6038970 at Sun Feb 22 04:38:53 2009

Writing checkpoint, step 6066130 at Sun Feb 22 04:53:53 2009
[11:08:37] - Autosending finished units... [February 22 11:08:37 UTC]
[11:08:37] Trying to send all finished work units
[11:08:37] + No unsent completed units remaining.
[11:08:37] - Autosend completed

Writing checkpoint, step 6093260 at Sun Feb 22 05:08:53 2009

Writing checkpoint, step 6120540 at Sun Feb 22 05:23:53 2009

Writing checkpoint, step 6147800 at Sun Feb 22 05:38:53 2009

Writing checkpoint, step 6175200 at Sun Feb 22 05:53:53 2009

Writing checkpoint, step 6202580 at Sun Feb 22 06:08:53 2009

Writing checkpoint, step 6229770 at Sun Feb 22 06:23:53 2009

Writing checkpoint, step 6256760 at Sun Feb 22 06:38:53 2009

Writing checkpoint, step 6283910 at Sun Feb 22 06:53:53 2009

Writing checkpoint, step 6311040 at Sun Feb 22 07:08:53 2009

Writing checkpoint, step 6338250 at Sun Feb 22 07:23:53 2009
[13:30:24] Completed 1350000 out of 44999996 steps  (3%)

Writing checkpoint, step 6365250 at Sun Feb 22 07:38:53 2009

Writing checkpoint, step 6392290 at Sun Feb 22 07:53:53 2009

Writing checkpoint, step 6419610 at Sun Feb 22 08:08:53 2009
Fold! It does a body good!™
toTOW
Site Moderator
Posts: 6349
Joined: Sun Dec 02, 2007 10:38 am
Location: Bordeaux, France
Contact:

Re: 4433 (R37, C3, G19) impossible run time.

Post by toTOW »

Is the number of steps correct for this WU :?:

You also have an old core ... you should force an upgrade.
Image

Folding@Home beta tester since 2002. Folding Forum moderator since July 2008.
Macaholic
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Posts: 811
Joined: Thu Nov 29, 2007 11:57 pm
Location: 1 Infinite Loop

Re: 4433 (R37, C3, G19) impossible run time.

Post by Macaholic »

toTOW wrote:You also have an old core ... you should force an upgrade.
Makes no difference. v2.04 of the A2 core is on another of my Mac Mini C2D 2.0GHz and it was sent the unit as well. It can't possibly finish within the 2 day time allowed. Here is the log from the second machine;

Code: Select all

[07:09:15] *------------------------------*
[07:09:15] Folding@Home Gromacs SMP Core
[07:09:15] Version 2.04 (Wed Jan 21 09:16:08 PST 2009)
[07:09:15] 
[07:09:15] Preparing to commence simulation
[07:09:15] - Ensuring status. Please wait.
[07:09:25] - Assembly optimizations manually forced on.
[07:09:25] - Not checking prior termination.
[07:09:25] - Expanded 229119 -> 1114469 (decompressed 486.4 percent)
[07:09:25] Called DecompressByteArray: compressed_data_size=229119 data_size=1114469, decompressed_data_size=1114469 diff=0
[07:09:25] - Digital signature verified
[07:09:25] 
[07:09:25] Project: 4433 (Run 37, Clone 3, Gen 19)
[07:09:25] 
[07:09:25] Assembly optimizations on if available.
[07:09:25] Entering M.D.
NNODES=4, MYRANK=0, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NNODES=4, MYRANK=1, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NNODES=4, MYRANK=2, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NNODES=4, MYRANK=3, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NODEID=0 argc=20
                         :-)  G  R  O  M  A  C  S  (-:

                   Groningen Machine for Chemical Simulation

                          :-)  VERSION 4.0.3_pre  (-:


      Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
       Copyright (c) 1991-2000, University of Groningen, The Netherlands.
             Copyright (c) 2001-2008, The GROMACS development team,
            check out http://www.gromacs.org for more information.


                                :-)  mdrun  (-:

NODEID=1 argc=20
NODEID=2 argc=20
NODEID=3 argc=20
Reading file work/wudata_02.tpr, VERSION 3.3.99_development_20080208 (single precision)
Note: tpx file_version 54, software version 58
Making 1D domain decomposition 4 x 1 x 1
starting mdrun 'Protein in water'
49999996 steps, 100000.0 ps (continuing from step 5000000,  10000.0 ps).
[08:32:50] - Autosending finished units... [February 23 08:32:50 UTC]
[08:32:50] Trying to send all finished work units
[08:32:50] + No unsent completed units remaining.
[08:32:50] - Autosend completed
[10:44:00] Completed 450000 out of 44999996 steps  (1%)
[14:18:44] Completed 900000 out of 44999996 steps  (2%)
[14:32:50] - Autosending finished units... [February 23 14:32:50 UTC]
[14:32:50] Trying to send all finished work units
[14:32:50] + No unsent completed units remaining.
[14:32:50] - Autosend completed
[17:53:43] Completed 1350000 out of 44999996 steps  (3%)
[20:32:50] - Autosending finished units... [February 23 20:32:50 UTC]
[20:32:50] Trying to send all finished work units
[20:32:50] + No unsent completed units remaining.
[20:32:50] - Autosend completed
Fold! It does a body good!™
toTOW
Site Moderator
Posts: 6349
Joined: Sun Dec 02, 2007 10:38 am
Location: Bordeaux, France
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Re: 4433 (R37, C3, G19) impossible run time.

Post by toTOW »

That's a defective WU with too many steps ... it's not the first time we see it with A2 projects ...
Image

Folding@Home beta tester since 2002. Folding Forum moderator since July 2008.
susato
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Posts: 511
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Re: 4433 (R37, C3, G19) impossible run time.

Post by susato »

Greg Bowman has withdrawn this WU and driven a stake through its heart; you can delete it without wondering if it will come back. :)
extrasalty
Posts: 26
Joined: Sat Jun 21, 2008 8:39 pm
Location: Las Vegas, NV

Re: 4433 (R37, C3, G19) impossible run time.

Post by extrasalty »

susato wrote:Greg Bowman has withdrawn this WU and driven a stake through its heart; you can delete it without wondering if it will come back. :)
:shock: :lol:
MSI Eclipse i7@3.45GHz
2x GTX260@702/1053/1512 Win 7+VMware+linuxfah VM+bigadv

Image
Macaholic
Site Moderator
Posts: 811
Joined: Thu Nov 29, 2007 11:57 pm
Location: 1 Infinite Loop

Re: 4433 (R37, C3, G19) impossible run time.

Post by Macaholic »

susato wrote:Greg Bowman has withdrawn this WU and driven a stake through its heart; you can delete it without wondering if it will come back. :)
Let me see. Have you ever seen The Shining? Let's just pretend that this unit is playing Jack Nicholson's role;

Code: Select all

[14:48:42] *------------------------------*
[14:48:42] Folding@Home Gromacs SMP Core
[14:48:42] Version 2.04 (Wed Jan 21 09:16:08 PST 2009)
[14:48:42] 
[14:48:42] Preparing to commence simulation
[14:48:42] - Ensuring status. Please wait.
[14:48:42] y forced on.
[14:48:42] - Not checking prior termination.
[14:48:42] - Expanded 229119 -> 1114469 (decompressed 486.4 percent)
[14:48:42] Called DecompressByteArray: compressed_data_size=229119 data_size=1114469, decompressed_data_size=1114469 diff=0
[14:48:42] - Digital signature verified
[14:48:42] 
[14:48:42] Project: 4433 (Run 37, Clone 3, Gen 19)
[14:48:42] 
[14:48:42] Assembly optimizations on if available.
[14:48:42] Entering M.D.
[14:48:48] Will resume from checkpoint file
NNODES=4, MYRANK=0, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NNODES=4, MYRANK=1, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NNODES=4, MYRANK=2, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NNODES=4, MYRANK=3, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NODEID=0 argc=20
NODEID=1 argc=20
                         NODEID=2 argc=20
:-)  G  R  O  M  A  C  S  (-:

                   Groningen Machine for Chemical Simulation

                          :-)  VERSION 4.0.3_pre  (-:


      Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
       Copyright (c) 1991-2000, University of Groningen, The Netherlands.
             Copyright (c) 2001-2008, The GROMACS development team,
            check out http://www.gromacs.org for more information.


                                :-)  mdrun  (-:

NODEID=3 argc=20
Reading file work/wudata_02.tpr, VERSION 3.3.99_development_20080208 (single precision)
Note: tpx file_version 54, software version 58
Making 1D domain decomposition 4 x 1 x 1
starting mdrun 'Protein in water'
49999996 steps, 100000.0 ps (continuing from step 5000000,  10000.0 ps).

-------------------------------------------------------
Program mdrun, VERSION 4.0.3_pre
Source code file: md.c, line: 1108

Fatal error:
Checkpoint error on step 5900010

-------------------------------------------------------

Thanx for Using GROMACS - Have a Nice Day

Error on node 0, will try to stop all the nodes
Halting parallel program mdrun on CPU 0 out of 4

gcq#49: Thanx[14:48:58] ill resume from checkpoint file
[14:48:58] Resuming from checkpoint
[14:48:58] fcSaveRestoreState: I/O failed dir=0, var=00651000, varsize=51132
[14:48:58] fcCheckPointResume: failure in call to fcSaveRestoreState() to restore state.
 for Using GROMACS - Have a Nice Day

[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, -1) - process 0
[0]0:Return code = 255
[0]1:Return code = 0, signaled with Quit
[0]2:Return code = 0, signaled with Quit
[0]3:Return code = 0, signaled with Quit
[14:49:02] CoreStatus = FF (255)
[14:49:02] Sending work to server
[14:49:02] Project: 4433 (Run 37, Clone 3, Gen 19)
[14:49:02] - Error: Could not get length of results file work/wuresults_02.dat
[14:49:02] - Error: Could not read unit 02 file. Removing from queue.
[14:49:02] Trying to send all finished work units
[14:49:02] + No unsent completed units remaining.
[14:49:02] - Preparing to get new work unit...
[14:49:02] + Attempting to get work packet
[14:49:02] - Will indicate memory of 512 MB
[14:49:02] - Detect CPU. Vendor: GenuineIntel, Family: 6, Model: 15, Stepping: 6
[14:49:02] - Connecting to assignment server
[14:49:02] Connecting to http://assign.stanford.edu:8080/
[14:49:03] Posted data.
[14:49:03] Initial: 43AB; - Successful: assigned to (171.67.108.19).
[14:49:03] + News From Folding@Home: Welcome to Folding@Home
[14:49:03] Loaded queue successfully.
[14:49:03] Connecting to http://171.67.108.19:8080/
[14:49:03] Posted data.
[14:49:03] Initial: 0000; - Receiving payload (expected size: 229631)
[14:49:06] - Downloaded at ~74 kB/s
[14:49:06] - Averaged speed for that direction ~77 kB/s
[14:49:06] + Received work.
[14:49:06] Trying to send all finished work units
[14:49:06] + No unsent completed units remaining.
[14:49:06] + Closed connections
[14:49:11] 
[14:49:11] + Processing work unit
[14:49:11] At least 4 processors must be requested.Core required: FahCore_a2.exe
[14:49:11] Core found.
[14:49:11] - Using generic ./mpiexec
[14:49:11] Working on queue slot 03 [February 25 14:49:11 UTC]
[14:49:11] + Working ...
[14:49:11] - Calling './mpiexec -np 4 -host 127.0.0.1 ./FahCore_a2.exe -dir work/ -suffix 03 -checkpoint 15 -forceasm -verbose -lifeline 4482 -version 624'

[14:49:11] 
[14:49:11] *------------------------------*
[14:49:11] Folding@Home Gromacs SMP Core
[14:49:11] Version 2.04 (Wed Jan 21 09:16:08 PST 2009)
[14:49:11] 
[14:49:11] Preparing to commence simulation
[14:49:11] - Ensuring status. Please wait.
[14:49:21] - Assembly optimizations manually forced on.
[14:49:21] - Not checking prior termination.
[14:49:21] - Expanded 229119 -> 1114469 (decompressed 486.4 percent)
[14:49:21] Called DecompressByteArray: compressed_data_size=229119 data_size=1114469, decompressed_data_size=1114469 diff=0
[14:49:21] - Digital signature verified
[14:49:21] 
[14:49:21] Project: 4433 (Run 37, Clone 3, Gen 19)
[14:49:21] 
[14:49:21] Assembly optimizations on if available.
[14:49:21] Entering M.D.
NNODES=4, MYRANK=0, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NNODES=4, MYRANK=1, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NNODES=4, MYRANK=2, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NNODES=4, MYRANK=3, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NODEID=1 argc=20
NODEID=0 argc=20
NODEID=2 argc=20
                         :-)  G  R  O  M  A  C  S  (-:

                   Groningen Machine for Chemical Simulation

                          :-)  VERSION 4.0.3_pre  (-:


      Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
       Copyright (c) 1991-2000, University of Groningen, The Netherlands.
             Copyright (c) 2001-2008, The GROMACS development team,
            check out http://www.gromacs.org for more information.


                                :-)  mdrun  (-:

NODEID=3 argc=20
Reading file work/wudata_03.tpr, VERSION 3.3.99_development_20080208 (single precision)
Note: tpx file_version 54, software version 58
Making 1D domain decomposition 4 x 1 x 1
starting mdrun 'Protein in water'
49999996 steps, 100000.0 ps (continuing from step 5000000,  10000.0 ps).
The appropriate line would be, I'm BAAAAAAAAACK! Frustrating, to say the least. :(
Fold! It does a body good!™
bruce
Posts: 20824
Joined: Thu Nov 29, 2007 10:13 pm
Location: So. Cal.

Re: 4433 (R37, C3, G19) impossible run time.

Post by bruce »

toTOW wrote:That's a defective WU with too many steps ... it's not the first time we see it with A2 projects ...
The good news is that development has determined how defective WUs like this got created and have fixed the code so once all that are currently still circulating are eliminated, the problem will be history.

If you have one like this, be sure to report it.
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