Project: 2671 (Run 47, Clone 24, Gen 72)

[road-runner]

WU has to many steps, aborting and deleting...

Code: Select all

[05:46:16] Project: 2671 (Run 47, Clone 24, Gen 72)
[05:46:16] 
[05:46:16] Assembly optimizations on if available.
[05:46:16] Entering M.D.
[05:46:26] Run 47, Clone 24, Gen 72)
[05:46:26] 
[05:46:26] Entering M.D.
NNODES=4, MYRANK=0, HOSTNAME=NZXT-Quad
NNODES=4, MYRANK=2, HOSTNAME=NZXT-Quad
NNODES=4, MYRANK=3, HOSTNAME=NZXT-Quad
NODEID=2 argc=19
NODEID=3 argc=19
NNODES=4, MYRANK=1, HOSTNAME=NZXT-Quad
NODEID=0 argc=19
                         :-)  G  R  O  M  A  C  S  (-:

                   Groningen Machine for Chemical Simulation

                 :-)  VERSION 3.3.99_development_200800503  (-:


      Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
       Copyright (c) 1991-2000, University of Groningen, The Netherlands.
             Copyright (c) 2001-2008, The GROMACS development team,
            check out http://www.gromacs.org for more information.


                                :-)  mdrun  (-:

NODEID=1 argc=19
Reading file work/wudata_03.tpr, VERSION 3.3.99_development_20070618 (single precision)
Note: tpx file_version 48, software version 56
Making 1D domain decomposition 1 x 1 x 4
starting mdrun '22866 system in water'
9000001 steps,  18000.0 ps.

Writing checkpoint, step 9254110 at Sun Feb  1 00:01:35 2009

Writing checkpoint, step 9258220 at Sun Feb  1 00:16:33 2009

Writing checkpoint, step 9262330 at Sun Feb  1 00:31:35 2009

Writing checkpoint, step 9266430 at Sun Feb  1 00:46:34 2009

Writing checkpoint, step 9270540 at Sun Feb  1 01:01:34 2009

Writing checkpoint, step 9274650 at Sun Feb  1 01:16:35 2009

Writing checkpoint, step 9278750 at Sun Feb  1 01:31:34 2009

Writing checkpoint, step 9282860 at Sun Feb  1 01:46:35 2009

Writing checkpoint, step 9286950 at Sun Feb  1 02:01:33 2009

Writing checkpoint, step 9292720 at Sun Feb  1 02:16:33 2009

Writing checkpoint, step 9300900 at Sun Feb  1 02:31:33 2009

Writing checkpoint, step 9309070 at Sun Feb  1 02:46:33 2009

Writing checkpoint, step 9317250 at Sun Feb  1 03:01:34 2009

Writing checkpoint, step 9325420 at Sun Feb  1 03:16:34 2009

Writing checkpoint, step 9332300 at Sun Feb  1 03:31:35 2009

Writing checkpoint, step 9336400 at Sun Feb  1 03:46:33 2009
[09:59:43] )

Writing checkpoint, step 9340520 at Sun Feb  1 04:01:35 2009

Writing checkpoint, step 9344620 at Sun Feb  1 04:16:35 2009

Writing checkpoint, step 9348720 at Sun Feb  1 04:31:35 2009

Writing checkpoint, step 9352820 at Sun Feb  1 04:46:34 2009

Writing checkpoint, step 9356930 at Sun Feb  1 05:01:34 2009

Writing checkpoint, step 9361030 at Sun Feb  1 05:16:34 2009

Writing checkpoint, step 9365120 at Sun Feb  1 05:31:33 2009

Writing checkpoint, step 9369210 at Sun Feb  1 05:46:33 2009

Writing checkpoint, step 9373310 at Sun Feb  1 06:01:33 2009

Writing checkpoint, step 9377420 at Sun Feb  1 06:16:34 2009

Writing checkpoint, step 9381530 at Sun Feb  1 06:31:34 2009

Writing checkpoint, step 9385640 at Sun Feb  1 06:46:35 2009

Writing checkpoint, step 9389730 at Sun Feb  1 07:01:34 2009

Writing checkpoint, step 9393830 at Sun Feb  1 07:16:34 2009

Writing checkpoint, step 9397940 at Sun Feb  1 07:31:35 2009

Writing checkpoint, step 9402020 at Sun Feb  1 07:46:34 2009

Writing checkpoint, step 9405980 at Sun Feb  1 08:01:34 2009

Writing checkpoint, step 9410070 at Sun Feb  1 08:16:35 2009

Writing checkpoint, step 9414160 at Sun Feb  1 08:31:33 2009

Writing checkpoint, step 9418270 at Sun Feb  1 08:46:35 2009

Writing checkpoint, step 9422360 at Sun Feb  1 09:01:33 2009

Writing checkpoint, step 9426470 at Sun Feb  1 09:16:35 2009
[15:29:32] Completed 180009 out of 9000001 steps  (2%)

Writing checkpoint, step 9430570 at Sun Feb  1 09:31:35 2009

Writing checkpoint, step 9434660 at Sun Feb  1 09:46:35 2009

Writing checkpoint, step 9438740 at Sun Feb  1 10:01:34 2009

Writing checkpoint, step 9442840 at Sun Feb  1 10:16:35 2009

Writing checkpoint, step 9446930 at Sun Feb  1 10:31:34 2009

Writing checkpoint, step 9451030 at Sun Feb  1 10:46:34 2009

Writing checkpoint, step 9455130 at Sun Feb  1 11:01:33 2009

Writing checkpoint, step 9459240 at Sun Feb  1 11:16:34 2009

Writing checkpoint, step 9463340 at Sun Feb  1 11:31:34 2009

Writing checkpoint, step 9467450 at Sun Feb  1 11:46:34 2009

Writing checkpoint, step 9471550 at Sun Feb  1 12:01:33 2009

Writing checkpoint, step 9475660 at Sun Feb  1 12:16:35 2009

Writing checkpoint, step 9479760 at Sun Feb  1 12:31:34 2009

Writing checkpoint, step 9483860 at Sun Feb  1 12:46:34 2009

Writing checkpoint, step 9487950 at Sun Feb  1 13:01:33 2009

Writing checkpoint, step 9492060 at Sun Feb  1 13:16:33 2009

Writing checkpoint, step 9496160 at Sun Feb  1 13:31:35 2009

Writing checkpoint, step 9500250 at Sun Feb  1 13:46:35 2009

Writing checkpoint, step 9504350 at Sun Feb  1 14:01:33 2009

Writing checkpoint, step 9508460 at Sun Feb  1 14:16:34 2009

Writing checkpoint, step 9512550 at Sun Feb  1 14:31:34 2009

Writing checkpoint, step 9516660 at Sun Feb  1 14:46:34 2009
[20:58:50] Completed 270009 out of 9000001 steps  (3%)

Writing checkpoint, step 9520750 at Sun Feb  1 15:01:34 2009

Writing checkpoint, step 9524850 at Sun Feb  1 15:16:34 2009

Writing checkpoint, step 9528950 at Sun Feb  1 15:31:35 2009

Writing checkpoint, step 9533040 at Sun Feb  1 15:46:35 2009

Writing checkpoint, step 9537130 at Sun Feb  1 16:01:33 2009

Code: Select all

[05:46:16] Assembly optimizations on if available.
[05:46:16] Entering M.D.
[05:46:26] Run 47, Clone 24, Gen 72)
[05:46:26] 
[05:46:26] Entering M.D.
[09:59:43] )
[15:29:32] Completed 180009 out of 9000001 steps  (2%)
[20:58:50] Completed 270009 out of 9000001 steps  (3%)

[road-runner]

Please remove this WU or fix it, it is now on another machine...

[torswin]

Hello.

I'm currently folding Project: 2671 (Run 47, Clone 24, Gen 72) and it's using 4-5 hours per per cent completion and I doubt I will complete it before the deadline. What to do?

Code: Select all

--- Opening Log file [February 4 21:13:19] 


# SMP Client ##################################################################
###############################################################################

                       Folding@Home Client Version 6.02

                          http://folding.stanford.edu

###############################################################################
###############################################################################

Launch directory: /home/torswin/foldingathome/CPU1
Executable: /home/torswin/foldingathome/CPU1/fah6
Arguments: -smp -verbosity 9 

[21:13:19] - Ask before connecting: No
[21:13:19] - User name: Torstein_Winterseth (Team 37651)
[21:13:19] - User ID: 755BB9AA567B2B59
[21:13:19] - Machine ID: 1
[21:13:19] 
[21:13:19] Loaded queue successfully.
[21:13:19] - Preparing to get new work unit...
[21:13:19] - Autosending finished units...
[21:13:19] + Attempting to get work packet
[21:13:19] Trying to send all finished work units
[21:13:19] - Will indicate memory of 2011 MB
[21:13:19] + No unsent completed units remaining.
[21:13:19] - Detect CPU.[21:13:19] - Autosend completed
 Vendor: GenuineIntel, Family: 6, Model: 15, Stepping: 7
[21:13:19] - Connecting to assignment server
[21:13:19] Connecting to http://assign.stanford.edu:8080/
[21:13:20] Posted data.
[21:13:20] Initial: 43AB; - Successful: assigned to (171.67.108.24).
[21:13:20] + News From Folding@Home: Welcome to Folding@Home
[21:13:20] Loaded queue successfully.
[21:13:20] Connecting to http://171.67.108.24:8080/
[21:13:26] Posted data.
[21:13:26] Initial: 0000; - Receiving payload (expected size: 4845678)
[21:13:38] - Downloaded at ~394 kB/s
[21:13:38] - Averaged speed for that direction ~428 kB/s
[21:13:38] + Received work.
[21:13:38] + Closed connections
[21:13:38] 
[21:13:38] + Processing work unit
[21:13:38] Core required: FahCore_a2.exe
[21:13:38] Core found.
[21:13:38] Working on Unit 05 [February 4 21:13:38]
[21:13:38] + Working ...
[21:13:38] - Calling './mpiexec -np 4 -host 127.0.0.1 ./FahCore_a2.exe -dir work/ -suffix 05 -checkpoint 15 -verbose -lifeline 7376 -version 602'

[21:13:38] 
[21:13:38] *------------------------------*
[21:13:38] Folding@Home Gromacs SMP Core
[21:13:38] Version 2.02 (Wed Aug 27 13:11:25 PDT 2008)
[21:13:38] 
[21:13:38] Preparing to commence simulation
[21:13:38] - Ensuring status. Please wait.
[21:13:47] - Looking at optimizations...
[21:13:47] - Working with standard loops on this execution.
[21:13:47] - Files status OK
[21:13:48] - Expanded 4845166 -> 24024181 (decompressed 495.8 percent)
[21:13:48] Called DecompressByteArray: compressed_data_size=4845166 data_size=24024181, decompressed_data_size=24024181 diff=0
[21:13:48] - Digital signature verified
[21:13:48] 
[21:13:48] Project: 2671 (Run 47, Clone 24, Gen 72)
[21:13:48] 
[21:13:49] Entering M.D.
[01:49:40] Completed 90009 out of 9000001 steps  (1%)
[03:13:19] - Autosending finished units...
[03:13:19] Trying to send all finished work units
[03:13:19] + No unsent completed units remaining.
[03:13:19] - Autosend completed
[06:25:29] Completed 180009 out of 9000001 steps  (2%)
[09:13:19] - Autosending finished units...
[09:13:19] Trying to send all finished work units
[09:13:19] + No unsent completed units remaining.
[09:13:19] - Autosend completed
[11:03:59] Completed 270009 out of 9000001 steps  (3%)
[15:13:19] - Autosending finished units...
[15:13:19] Trying to send all finished work units
[15:13:19] + No unsent completed units remaining.
[15:13:19] - Autosend completed
[15:40:33] Completed 360009 out of 9000001 steps  (4%)
[20:34:15] Completed 450009 out of 9000001 steps  (5%)
[21:13:19] - Autosending finished units...
[21:13:19] Trying to send all finished work units
[21:13:19] + No unsent completed units remaining.
[21:13:19] - Autosend completed

[kasson]

[20:34:15] Completed 450009 out of 9000001 steps (5%)

It has too many steps for this project, so it's a bad work unit.
I'll stop this one on the server. You probably want to delete the work unit, and you might also delete your FahCore_a2.exe while you're at it.

[road-runner]

Hello? Anybody home? This is the 3rd time. This is getting ridiculous, can you please fix this WU or remove it?

Code: Select all

[21:57:18] Project: 2671 (Run 47, Clone 24, Gen 72)
[21:57:18] 
[21:57:18] Assembly optimizations on if available.
[21:57:18] Entering M.D.
[21:57:28] Run 47, Clone 24, Gen 72)
[21:57:28] 
[21:57:28] Entering M.D.
[02:22:48] )
[07:53:27] Completed 180009 out of 9000001 steps  (2%)
[13:24:11] Completed 270009 out of 9000001 steps  (3%)
[17:19:36] Completed 360009 out of 9000001 steps  (4%)
[22:49:46] Completed 450009 out of 9000001 steps  (5%)