I have had several errors like this.
My question is:
- Is this a problem with my system or the work unit ?
What, if any, action should I take ?
Code: Select all
07:10:27:WU00:FS00:FahCore 0xa7 started
07:10:28:WU00:FS00:0xa7:*********************** Log Started 2020-12-07T07:10:27Z ***********************
07:10:28:WU00:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
07:10:28:WU00:FS00:0xa7: Type: 0xa7
07:10:28:WU00:FS00:0xa7: Core: Gromacs
07:10:28:WU00:FS00:0xa7: Args: -dir 00 -suffix 01 -version 706 -lifeline 223503 -checkpoint 15 -np
07:10:28:WU00:FS00:0xa7: 16
07:10:28:WU00:FS00:0xa7:************************************ CBang *************************************
07:10:28:WU00:FS00:0xa7: Date: Nov 27 2019
07:10:28:WU00:FS00:0xa7: Time: 11:26:54
07:10:28:WU00:FS00:0xa7: Revision: d25803215b59272441049dfa05a0a9bf7a6e3c48
07:10:28:WU00:FS00:0xa7: Branch: master
07:10:28:WU00:FS00:0xa7: Compiler: GNU 8.3.0
07:10:28:WU00:FS00:0xa7: Options: -std=c++11 -ffunction-sections -fdata-sections -O3 -funroll-loops
07:10:28:WU00:FS00:0xa7: -fno-pie -fPIC
07:10:28:WU00:FS00:0xa7: Platform: linux2 4.19.0-5-amd64
07:10:28:WU00:FS00:0xa7: Bits: 64
07:10:28:WU00:FS00:0xa7: Mode: Release
07:10:28:WU00:FS00:0xa7:************************************ System ************************************
07:10:28:WU00:FS00:0xa7: CPU: AMD Ryzen 7 3700X 8-Core Processor
07:10:28:WU00:FS00:0xa7: CPU ID: AuthenticAMD Family 23 Model 113 Stepping 0
07:10:28:WU00:FS00:0xa7: CPUs: 16
07:10:28:WU00:FS00:0xa7: Memory: 31.37GiB
07:10:28:WU00:FS00:0xa7:Free Memory: 591.95MiB
07:10:28:WU00:FS00:0xa7: Threads: POSIX_THREADS
07:10:28:WU00:FS00:0xa7: OS Version: 5.8
07:10:28:WU00:FS00:0xa7:Has Battery: false
07:10:28:WU00:FS00:0xa7: On Battery: false
07:10:28:WU00:FS00:0xa7: UTC Offset: 0
07:10:28:WU00:FS00:0xa7: PID: 223507
07:10:28:WU00:FS00:0xa7: CWD: /var/lib/fahclient/work
07:10:28:WU00:FS00:0xa7:******************************** Build - libFAH ********************************
07:10:28:WU00:FS00:0xa7: Version: 0.0.19
07:10:28:WU00:FS00:0xa7: Author: Joseph Coffland <joseph@cauldrondevelopment.com>
07:10:28:WU00:FS00:0xa7: Copyright: 2019 foldingathome.org
07:10:28:WU00:FS00:0xa7: Homepage: https://foldingathome.org/
07:10:28:WU00:FS00:0xa7: Date: Nov 26 2019
07:10:28:WU00:FS00:0xa7: Time: 00:41:42
07:10:28:WU00:FS00:0xa7: Revision: d5b5c747532224f986b7cd02c968ed9a20c16d6e
07:10:28:WU00:FS00:0xa7: Branch: master
07:10:28:WU00:FS00:0xa7: Compiler: GNU 8.3.0
07:10:28:WU00:FS00:0xa7: Options: -std=c++11 -ffunction-sections -fdata-sections -O3 -funroll-loops
07:10:28:WU00:FS00:0xa7: -fno-pie
07:10:28:WU00:FS00:0xa7: Platform: linux2 4.19.0-5-amd64
07:10:28:WU00:FS00:0xa7: Bits: 64
07:10:28:WU00:FS00:0xa7: Mode: Release
07:10:28:WU00:FS00:0xa7:************************************ Build *************************************
07:10:28:WU00:FS00:0xa7: SIMD: avx_256
07:10:28:WU00:FS00:0xa7:********************************************************************************
07:10:28:WU00:FS00:0xa7:Project: 16927 (Run 3, Clone 102, Gen 28)
07:10:28:WU00:FS00:0xa7:Unit: 0x0000001d8120d1c90000000000030066
07:10:28:WU00:FS00:0xa7:Digital signatures verified
07:10:28:WU00:FS00:0xa7:Calling: mdrun -s frame28.tpr -o frame28.trr -cpi state.cpt -cpt 15 -nt 16
07:10:28:WU00:FS00:0xa7:Steps: first=14000000 total=500000
07:10:29:WU00:FS00:0xa7:Completed 150061 out of 500000 steps (30%)
....
07:53:08:WU00:FS00:0xa7:Completed 370000 out of 500000 steps (74%)
07:54:06:WU00:FS00:0xa7:Completed 375000 out of 500000 steps (75%)
07:54:22:WU00:FS00:0xa7:ERROR:
07:54:22:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
07:54:22:WU00:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
07:54:22:WU00:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
07:54:22:WU00:FS00:0xa7:ERROR:
07:54:22:WU00:FS00:0xa7:ERROR:Fatal error:
07:54:22:WU00:FS00:0xa7:ERROR:1 particles communicated to PME rank 10 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
07:54:22:WU00:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
07:54:22:WU00:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
07:54:22:WU00:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
07:54:22:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
07:54:28:WU00:FS00:FahCore returned: INTERRUPTED (102 = 0x66)