Code: Select all
18:25:44:WU00:FS00:Starting
18:25:44:WU00:FS00:Removing old file './work/00/logfile_01-20191130-175343.txt'
18:25:44:WU00:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /var/lib/fahclient/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7 -dir 00 -suffix 01 -version 705 -lifeline 18256 -checkpoint 15 -np 11
18:25:44:WU00:FS00:Started FahCore on PID 4729
18:25:44:WU00:FS00:Core PID:4733
18:25:44:WU00:FS00:FahCore 0xa7 started
18:25:44:WU00:FS00:0xa7:*********************** Log Started 2019-11-30T18:25:44Z ***********************
18:25:44:WU00:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
18:25:44:WU00:FS00:0xa7: Type: 0xa7
18:25:44:WU00:FS00:0xa7: Core: Gromacs
18:25:44:WU00:FS00:0xa7: Args: -dir 00 -suffix 01 -version 705 -lifeline 4729 -checkpoint 15 -np
18:25:44:WU00:FS00:0xa7: 11
18:25:44:WU00:FS00:0xa7:************************************ CBang *************************************
18:25:44:WU00:FS00:0xa7: Date: Nov 5 2019
18:25:44:WU00:FS00:0xa7: Time: 06:06:57
18:25:44:WU00:FS00:0xa7: Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
18:25:44:WU00:FS00:0xa7: Branch: master
18:25:44:WU00:FS00:0xa7: Compiler: GNU 8.3.0
18:25:44:WU00:FS00:0xa7: Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
18:25:44:WU00:FS00:0xa7: Platform: linux2 4.19.0-5-amd64
18:25:44:WU00:FS00:0xa7: Bits: 64
18:25:44:WU00:FS00:0xa7: Mode: Release
18:25:44:WU00:FS00:0xa7:************************************ System ************************************
18:25:44:WU00:FS00:0xa7: CPU: AMD Ryzen 7 2700X Eight-Core Processor
18:25:44:WU00:FS00:0xa7: CPU ID: AuthenticAMD Family 23 Model 8 Stepping 2
18:25:44:WU00:FS00:0xa7: CPUs: 16
18:25:44:WU00:FS00:0xa7: Memory: 31.40GiB
18:25:44:WU00:FS00:0xa7:Free Memory: 231.17MiB
18:25:44:WU00:FS00:0xa7: Threads: POSIX_THREADS
18:25:44:WU00:FS00:0xa7: OS Version: 5.0
18:25:44:WU00:FS00:0xa7:Has Battery: false
18:25:44:WU00:FS00:0xa7: On Battery: false
18:25:44:WU00:FS00:0xa7: UTC Offset: 2
18:25:44:WU00:FS00:0xa7: PID: 4733
18:25:44:WU00:FS00:0xa7: CWD: /var/lib/fahclient/work
18:25:44:WU00:FS00:0xa7:******************************** Build - libFAH ********************************
18:25:44:WU00:FS00:0xa7: Version: 0.0.18
18:25:44:WU00:FS00:0xa7: Author: Joseph Coffland <joseph@cauldrondevelopment.com>
18:25:44:WU00:FS00:0xa7: Copyright: 2019 foldingathome.org
18:25:44:WU00:FS00:0xa7: Homepage: https://foldingathome.org/
18:25:44:WU00:FS00:0xa7: Date: Nov 5 2019
18:25:44:WU00:FS00:0xa7: Time: 06:13:26
18:25:44:WU00:FS00:0xa7: Revision: 490c9aa2957b725af319379424d5c5cb36efb656
18:25:44:WU00:FS00:0xa7: Branch: master
18:25:44:WU00:FS00:0xa7: Compiler: GNU 8.3.0
18:25:44:WU00:FS00:0xa7: Options: -std=c++11 -O3 -funroll-loops -fno-pie
18:25:44:WU00:FS00:0xa7: Platform: linux2 4.19.0-5-amd64
18:25:44:WU00:FS00:0xa7: Bits: 64
18:25:44:WU00:FS00:0xa7: Mode: Release
18:25:44:WU00:FS00:0xa7:************************************ Build *************************************
18:25:44:WU00:FS00:0xa7: SIMD: avx_256
18:25:44:WU00:FS00:0xa7:********************************************************************************
18:25:44:WU00:FS00:0xa7:Project: 14245 (Run 0, Clone 84, Gen 146)
18:25:44:WU00:FS00:0xa7:Unit: 0x000000d980fccb0a5d6fe0b4a6c93987
18:25:44:WU00:FS00:0xa7:Reading tar file core.xml
18:25:44:WU00:FS00:0xa7:Reading tar file frame146.tpr
18:25:44:WU00:FS00:0xa7:Digital signatures verified
18:25:44:WU00:FS00:0xa7:Reducing thread count from 11 to 10 to avoid domain decomposition by a prime number > 3
18:25:44:WU00:FS00:0xa7:Calling: mdrun -s frame146.tpr -o frame146.trr -x frame146.xtc -cpt 15 -nt 10
18:25:44:WU00:FS00:0xa7:Steps: first=36500000 total=250000
18:25:44:WU00:FS00:0xa7:ERROR:
18:25:44:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
18:25:44:WU00:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
18:25:44:WU00:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/domdec.c, line: 6902
18:25:44:WU00:FS00:0xa7:ERROR:
18:25:44:WU00:FS00:0xa7:ERROR:Fatal error:
18:25:44:WU00:FS00:0xa7:ERROR:There is no domain decomposition for 10 ranks that is compatible with the given box and a minimum cell size of 1.45733 nm
18:25:44:WU00:FS00:0xa7:ERROR:Change the number of ranks or mdrun option -rcon or -dds or your LINCS settings
18:25:44:WU00:FS00:0xa7:ERROR:Look in the log file for details on the domain decomposition
18:25:44:WU00:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
18:25:44:WU00:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
18:25:44:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
18:25:49:WU00:FS00:0xa7:WARNING:Unexpected exit() call
18:25:49:WU00:FS00:0xa7:WARNING:Unexpected exit from science code
18:25:49:WU00:FS00:0xa7:Saving result file ../logfile_01.txt
18:25:49:WU00:FS00:0xa7:Saving result file md.log
18:25:49:WU00:FS00:0xa7:Saving result file science.log
18:25:49:WU00:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
Code: Select all
04:30:01:WU00:FS00:0xa7:Completed 1250000 out of 1250000 steps (100%)
04:30:03:WU00:FS00:0xa7:Saving result file ../logfile_01.txt
04:30:03:WU00:FS00:0xa7:Saving result file frame15.trr
04:30:03:WU00:FS00:0xa7:Saving result file md.log
04:30:03:WU00:FS00:0xa7:Saving result file science.log
04:30:03:WU00:FS00:0xa7:Saving result file traj_comp.xtc
04:30:03:WU00:FS00:0xa7:Folding@home Core Shutdown: FINISHED_UNIT
04:30:03:WU00:FS00:FahCore returned: FINISHED_UNIT (100 = 0x64)
04:30:04:WU00:FS00:Sending unit results: id:00 state:SEND error:NO_ERROR project:14188 run:1 clone:768 gen:15 core:0xa7 unit:0x000000150002894b5d77e69b2c1adbdf
04:30:04:WU00:FS00:Uploading 9.80MiB to 155.247.166.219
04:30:04:WU00:FS00:Connecting to 155.247.166.219:8080
04:30:10:WU00:FS00:Upload 64.39%
04:30:18:WU00:FS00:Upload 93.71%
04:30:25:WU00:FS00:Upload complete
04:30:25:WU00:FS00:Server responded WORK_ACK (400)
04:30:25:WU00:FS00:Final credit estimate, 35181.00 points
04:30:25:WU00:FS00:Cleaning up
******************************* Date: 2019-11-30 *******************************
11:25:41:WU00:FS00:Connecting to 65.254.110.245:8080
11:25:42:WU00:FS00:Assigned to work server 128.252.203.9
11:25:42:WU00:FS00:Requesting new work unit for slot 00: READY cpu:11 from 128.252.203.9
11:25:42:WU00:FS00:Connecting to 128.252.203.9:8080
11:25:42:WU00:FS00:Downloading 8.14MiB
11:25:44:WU00:FS00:Download complete
11:25:44:WU00:FS00:Received Unit: id:00 state:DOWNLOAD error:NO_ERROR project:13829 run:124 clone:0 gen:64 core:0xa7 unit:0x0000004d80fccb095d66d49f091a544d
11:25:44:WU00:FS00:Starting
11:25:44:WU00:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /var/lib/fahclient/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7 -dir 00 -suffix 01 -version 705 -lifeline 18256 -checkpoint 15 -np 11
11:25:44:WU00:FS00:Started FahCore on PID 30223
11:25:44:WU00:FS00:Core PID:30227
11:25:44:WU00:FS00:FahCore 0xa7 started
11:25:44:WU00:FS00:0xa7:*********************** Log Started 2019-11-30T11:25:44Z ***********************
11:25:44:WU00:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
11:25:44:WU00:FS00:0xa7: Type: 0xa7
11:25:44:WU00:FS00:0xa7: Core: Gromacs
11:25:44:WU00:FS00:0xa7: Args: -dir 00 -suffix 01 -version 705 -lifeline 30223 -checkpoint 15 -np
11:25:44:WU00:FS00:0xa7: 11
11:25:44:WU00:FS00:0xa7:************************************ CBang *************************************
11:25:44:WU00:FS00:0xa7: Date: Nov 5 2019
11:25:44:WU00:FS00:0xa7: Time: 06:06:57
11:25:44:WU00:FS00:0xa7: Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
11:25:44:WU00:FS00:0xa7: Branch: master
11:25:44:WU00:FS00:0xa7: Compiler: GNU 8.3.0
11:25:44:WU00:FS00:0xa7: Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
11:25:44:WU00:FS00:0xa7: Platform: linux2 4.19.0-5-amd64
11:25:44:WU00:FS00:0xa7: Bits: 64
11:25:44:WU00:FS00:0xa7: Mode: Release
11:25:44:WU00:FS00:0xa7:************************************ System ************************************
11:25:44:WU00:FS00:0xa7: CPU: AMD Ryzen 7 2700X Eight-Core Processor
11:25:44:WU00:FS00:0xa7: CPU ID: AuthenticAMD Family 23 Model 8 Stepping 2
11:25:44:WU00:FS00:0xa7: CPUs: 16
11:25:44:WU00:FS00:0xa7: Memory: 31.40GiB
11:25:44:WU00:FS00:0xa7:Free Memory: 244.66MiB
11:25:44:WU00:FS00:0xa7: Threads: POSIX_THREADS
11:25:44:WU00:FS00:0xa7: OS Version: 5.0
11:25:44:WU00:FS00:0xa7:Has Battery: false
11:25:44:WU00:FS00:0xa7: On Battery: false
11:25:44:WU00:FS00:0xa7: UTC Offset: 2
11:25:44:WU00:FS00:0xa7: PID: 30227
11:25:44:WU00:FS00:0xa7: CWD: /var/lib/fahclient/work
11:25:44:WU00:FS00:0xa7:******************************** Build - libFAH ********************************
11:25:44:WU00:FS00:0xa7: Version: 0.0.18
11:25:44:WU00:FS00:0xa7: Author: Joseph Coffland <joseph@cauldrondevelopment.com>
11:25:44:WU00:FS00:0xa7: Copyright: 2019 foldingathome.org
11:25:44:WU00:FS00:0xa7: Homepage: https://foldingathome.org/
11:25:44:WU00:FS00:0xa7: Date: Nov 5 2019
11:25:44:WU00:FS00:0xa7: Time: 06:13:26
11:25:44:WU00:FS00:0xa7: Revision: 490c9aa2957b725af319379424d5c5cb36efb656
11:25:44:WU00:FS00:0xa7: Branch: master
11:25:44:WU00:FS00:0xa7: Compiler: GNU 8.3.0
11:25:44:WU00:FS00:0xa7: Options: -std=c++11 -O3 -funroll-loops -fno-pie
11:25:44:WU00:FS00:0xa7: Platform: linux2 4.19.0-5-amd64
11:25:44:WU00:FS00:0xa7: Bits: 64
11:25:44:WU00:FS00:0xa7: Mode: Release
11:25:44:WU00:FS00:0xa7:************************************ Build *************************************
11:25:44:WU00:FS00:0xa7: SIMD: avx_256
11:25:44:WU00:FS00:0xa7:********************************************************************************
11:25:44:WU00:FS00:0xa7:Project: 13829 (Run 124, Clone 0, Gen 64)
11:25:44:WU00:FS00:0xa7:Unit: 0x0000004d80fccb095d66d49f091a544d
11:25:44:WU00:FS00:0xa7:Reading tar file core.xml
11:25:44:WU00:FS00:0xa7:Reading tar file frame64.tpr
11:25:44:WU00:FS00:0xa7:Digital signatures verified
11:25:44:WU00:FS00:0xa7:Reducing thread count from 11 to 10 to avoid domain decomposition by a prime number > 3
11:25:44:WU00:FS00:0xa7:Calling: mdrun -s frame64.tpr -o frame64.trr -x frame64.xtc -cpt 15 -nt 10
11:25:44:WU00:FS00:0xa7:Steps: first=8000000 total=125000
11:25:47:WU00:FS00:0xa7:Completed 1 out of 125000 steps (0%)
11:26:58:WU00:FS00:0xa7:Completed 1250 out of 125000 steps (1%)
11:28:08:WU00:FS00:0xa7:Completed 2500 out of 125000 steps (2%)
11:29:20:WU00:FS00:0xa7:Completed 3750 out of 125000 steps (3%)
11:30:33:WU00:FS00:0xa7:Completed 5000 out of 125000 steps (4%)
11:31:43:WU00:FS00:0xa7:Completed 6250 out of 125000 steps (5%)
11:32:53:WU00:FS00:0xa7:Completed 7500 out of 125000 steps (6%)
11:34:04:WU00:FS00:0xa7:Completed 8750 out of 125000 steps (7%)
11:35:14:WU00:FS00:0xa7:Completed 10000 out of 125000 steps (8%)
11:36:25:WU00:FS00:0xa7:Completed 11250 out of 125000 steps (9%)
11:37:36:WU00:FS00:0xa7:Completed 12500 out of 125000 steps (10%)
11:38:47:WU00:FS00:0xa7:Completed 13750 out of 125000 steps (11%)
11:39:58:WU00:FS00:0xa7:Completed 15000 out of 125000 steps (12%)
11:41:10:WU00:FS00:0xa7:Completed 16250 out of 125000 steps (13%)
11:42:22:WU00:FS00:0xa7:Completed 17500 out of 125000 steps (14%)
11:43:32:WU00:FS00:0xa7:Completed 18750 out of 125000 steps (15%)
11:44:42:WU00:FS00:0xa7:Completed 20000 out of 125000 steps (16%)
11:45:53:WU00:FS00:0xa7:Completed 21250 out of 125000 steps (17%)
11:47:03:WU00:FS00:0xa7:Completed 22500 out of 125000 steps (18%)
11:48:14:WU00:FS00:0xa7:Completed 23750 out of 125000 steps (19%)
11:49:25:WU00:FS00:0xa7:Completed 25000 out of 125000 steps (20%)
11:50:33:WU00:FS00:0xa7:Completed 26250 out of 125000 steps (21%)
11:51:39:WU00:FS00:0xa7:Completed 27500 out of 125000 steps (22%)
11:52:44:WU00:FS00:0xa7:Completed 28750 out of 125000 steps (23%)
11:53:55:WU00:FS00:0xa7:Completed 30000 out of 125000 steps (24%)
11:55:06:WU00:FS00:0xa7:Completed 31250 out of 125000 steps (25%)
11:56:17:WU00:FS00:0xa7:Completed 32500 out of 125000 steps (26%)
11:57:26:WU00:FS00:0xa7:Completed 33750 out of 125000 steps (27%)
11:58:37:WU00:FS00:0xa7:Completed 35000 out of 125000 steps (28%)
11:59:47:WU00:FS00:0xa7:Completed 36250 out of 125000 steps (29%)
12:00:55:WU00:FS00:0xa7:Completed 37500 out of 125000 steps (30%)
12:02:03:WU00:FS00:0xa7:Completed 38750 out of 125000 steps (31%)
12:03:11:WU00:FS00:0xa7:Completed 40000 out of 125000 steps (32%)
12:04:21:WU00:FS00:0xa7:Completed 41250 out of 125000 steps (33%)
12:05:30:WU00:FS00:0xa7:Completed 42500 out of 125000 steps (34%)
12:06:40:WU00:FS00:0xa7:Completed 43750 out of 125000 steps (35%)
12:07:51:WU00:FS00:0xa7:Completed 45000 out of 125000 steps (36%)
12:09:00:WU00:FS00:0xa7:Completed 46250 out of 125000 steps (37%)
12:10:08:WU00:FS00:0xa7:Completed 47500 out of 125000 steps (38%)
12:11:18:WU00:FS00:0xa7:Completed 48750 out of 125000 steps (39%)
12:12:28:WU00:FS00:0xa7:Completed 50000 out of 125000 steps (40%)
12:13:44:WU00:FS00:0xa7:Completed 51250 out of 125000 steps (41%)
12:14:57:WU00:FS00:0xa7:Completed 52500 out of 125000 steps (42%)
12:16:09:WU00:FS00:0xa7:Completed 53750 out of 125000 steps (43%)
12:17:22:WU00:FS00:0xa7:Completed 55000 out of 125000 steps (44%)
12:18:36:WU00:FS00:0xa7:Completed 56250 out of 125000 steps (45%)
12:19:50:WU00:FS00:0xa7:Completed 57500 out of 125000 steps (46%)
12:21:03:WU00:FS00:0xa7:Completed 58750 out of 125000 steps (47%)
12:22:14:WU00:FS00:0xa7:Completed 60000 out of 125000 steps (48%)
12:23:29:WU00:FS00:0xa7:Completed 61250 out of 125000 steps (49%)
12:24:43:WU00:FS00:0xa7:Completed 62500 out of 125000 steps (50%)
12:25:55:WU00:FS00:0xa7:Completed 63750 out of 125000 steps (51%)
12:27:08:WU00:FS00:0xa7:Completed 65000 out of 125000 steps (52%)
12:28:21:WU00:FS00:0xa7:Completed 66250 out of 125000 steps (53%)
12:29:33:WU00:FS00:0xa7:Completed 67500 out of 125000 steps (54%)
12:30:46:WU00:FS00:0xa7:Completed 68750 out of 125000 steps (55%)
12:31:59:WU00:FS00:0xa7:Completed 70000 out of 125000 steps (56%)
12:33:12:WU00:FS00:0xa7:Completed 71250 out of 125000 steps (57%)
12:34:25:WU00:FS00:0xa7:Completed 72500 out of 125000 steps (58%)
12:35:40:WU00:FS00:0xa7:Completed 73750 out of 125000 steps (59%)
12:36:54:WU00:FS00:0xa7:Completed 75000 out of 125000 steps (60%)
12:38:09:WU00:FS00:0xa7:Completed 76250 out of 125000 steps (61%)
12:39:23:WU00:FS00:0xa7:Completed 77500 out of 125000 steps (62%)
12:40:37:WU00:FS00:0xa7:Completed 78750 out of 125000 steps (63%)
12:41:49:WU00:FS00:0xa7:Completed 80000 out of 125000 steps (64%)
12:43:02:WU00:FS00:0xa7:Completed 81250 out of 125000 steps (65%)
12:44:15:WU00:FS00:0xa7:Completed 82500 out of 125000 steps (66%)
12:45:27:WU00:FS00:0xa7:Completed 83750 out of 125000 steps (67%)
12:46:39:WU00:FS00:0xa7:Completed 85000 out of 125000 steps (68%)
12:47:51:WU00:FS00:0xa7:Completed 86250 out of 125000 steps (69%)
12:49:10:WU00:FS00:0xa7:Completed 87500 out of 125000 steps (70%)
17:03:43:WU00:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
17:03:43:WU00:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/domdec.c, line: 6902
17:03:43:WU00:FS00:0xa7:ERROR:
17:03:43:WU00:FS00:0xa7:ERROR:Fatal error:
17:03:43:WU00:FS00:0xa7:ERROR:There is no domain decomposition for 10 ranks that is compatible with the given box and a minimum cell size of 1.45733 nm
17:03:43:WU00:FS00:0xa7:ERROR:Change the number of ranks or mdrun option -rcon or -dds or your LINCS settings
17:03:43:WU00:FS00:0xa7:ERROR:Look in the log file for details on the domain decomposition
17:03:43:WU00:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
17:03:43:WU00:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
17:03:43:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
17:03:48:WU00:FS00:0xa7:WARNING:Unexpected exit() call
17:03:48:WU00:FS00:0xa7:WARNING:Unexpected exit from science code
17:03:48:WU00:FS00:0xa7:Saving result file ../logfile_01.txt
17:03:48:WU00:FS00:0xa7:Saving result file md.log
17:03:48:WU00:FS00:0xa7:Saving result file science.log
17:03:48:WU00:FS00:FahCore returned: INTERRUPTED (102 = 0x66)