Core 21.0.0.18 update

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silverpulser
Posts: 107
Joined: Sat Nov 10, 2012 9:06 am

Core 21.0.0.18 update

Post by silverpulser »

I am getting the known issue of an error :
22:54:01:WARNING:FS01:Size of positions 18928 does not match topology 18843
Looking at the announcement on the 20th January it said that a workaround should be available in a week.
Is that still the case and if it has bee addressed am I just getting WU before the fix?
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ComputerGenie
Posts: 230
Joined: Mon Dec 12, 2016 4:06 am

Re: Core 21.0.0.18 update

Post by ComputerGenie »

"does not match topology" is a known issue (that has no effect on folding or points) and will supposedly be fixed in the future.
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Amaruk
Posts: 254
Joined: Fri Jun 20, 2008 3:57 am
Location: Watching from the Woods

Re: Core 21.0.0.18 update

Post by Amaruk »

Looks like it's still on the 'soon' list. :wink:

Code: Select all

*********************** Log Started 2018-06-02T06:25:22Z ***********************
06:25:22:************************* Folding@home Client *************************
06:25:22:        Website: https://foldingathome.org/
06:25:22:      Copyright: (c) 2009-2018 foldingathome.org
06:25:22:         Author: Joseph Coffland <joseph@cauldrondevelopment.com>
06:25:22:           Args: --child --lifeline 1181 /etc/fahclient/config.xml --run-as
06:25:22:                 fahclient --pid-file=/var/run/fahclient.pid --daemon
06:25:22:         Config: /etc/fahclient/config.xml
06:25:22:******************************** Build ********************************
06:25:22:        Version: 7.5.1
06:25:22:           Date: May 11 2018
06:25:22:           Time: 19:59:04
06:25:22:     Repository: Git
06:25:22:       Revision: 4705bf53c635f88b8fe85af7675557e15d491ff0
06:25:22:         Branch: master
06:25:22:       Compiler: GNU 6.3.0 20170516
06:25:22:        Options: -std=gnu++98 -O3 -funroll-loops
06:25:22:       Platform: linux2 4.14.0-3-amd64
06:25:22:           Bits: 64
06:25:22:           Mode: Release
06:25:22:******************************* System ********************************
06:25:22:            CPU: Intel(R) Core(TM) i7-4790K CPU @ 4.00GHz
06:25:22:         CPU ID: GenuineIntel Family 6 Model 60 Stepping 3
06:25:22:           CPUs: 8
06:25:22:         Memory: 31.30GiB
06:25:22:    Free Memory: 30.65GiB
06:25:22:        Threads: POSIX_THREADS
06:25:22:     OS Version: 4.15
06:25:22:    Has Battery: false
06:25:22:     On Battery: false
06:25:22:     UTC Offset: -5
06:25:22:            PID: 1183
06:25:22:            CWD: /var/lib/fahclient
06:25:22:             OS: Linux 4.15.0-22-generic x86_64
06:25:22:        OS Arch: AMD64
06:25:22:           GPUs: 1
06:25:22:          GPU 0: Bus:1 Slot:0 Func:0 NVIDIA:7 GP104 [GeForce GTX 1080] 8873
06:25:22:  CUDA Device 0: Platform:0 Device:0 Bus:1 Slot:0 Compute:6.1 Driver:9.1
06:25:22:OpenCL Device 0: Platform:0 Device:0 Bus:1 Slot:0 Compute:1.2 Driver:390.48
06:25:22:***********************************************************************
06:25:22:<config>
06:25:22:  <!-- HTTP Server -->
06:25:22:  <allow v='127.0.0.1 192.168.5.0/24'/>
06:25:22:
06:25:22:  <!-- Network -->
06:25:22:  <proxy v=':8080'/>
06:25:22:
06:25:22:  <!-- Remote Command Server -->
06:25:22:  <command-allow-no-pass v='127.0.0.1 192.168.5.0/24'/>
06:25:22:
06:25:22:  <!-- Slot Control -->
06:25:22:  <pause-on-start v='true'/>
06:25:22:  <power v='full'/>
06:25:22:
06:25:22:  <!-- User Information -->
06:25:22:  <passkey v='********************************'/>
06:25:22:  <team v='50625'/>
06:25:22:  <user v='Amaruk'/>
06:25:22:
06:25:22:  <!-- Work Unit Control -->
06:25:22:  <next-unit-percentage v='100'/>
06:25:22:
06:25:22:  <!-- Folding Slots -->
06:25:22:  <slot id='0' type='CPU'/>
06:25:22:</config>
06:25:22:Switching to user fahclient
06:25:22:Trying to access database...
06:25:22:Successfully acquired database lock
06:25:22:Enabled folding slot 00: PAUSED cpu:8 (by user)
06:25:48:FS00:Unpaused
06:25:48:WU00:FS00:Starting
06:25:48:WU00:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /var/lib/fahclient/cores/cores.foldingathome.org/Linux/AMD64/AVX/Core_a7.fah/FahCore_a7 -dir 00 -suffix 01 -version 705 -lifeline 1183 -checkpoint 15 -np 8
06:25:48:WU00:FS00:Started FahCore on PID 1891
06:25:48:WU00:FS00:Core PID:1895
06:25:48:WU00:FS00:FahCore 0xa7 started
06:25:49:WU00:FS00:0xa7:*********************** Log Started 2018-06-02T06:25:48Z ***********************
06:25:49:WU00:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
06:25:49:WU00:FS00:0xa7:       Type: 0xa7
06:25:49:WU00:FS00:0xa7:       Core: Gromacs
06:25:49:WU00:FS00:0xa7:    Website: https://foldingathome.org/
06:25:49:WU00:FS00:0xa7:  Copyright: (c) 2009-2018 foldingathome.org
06:25:49:WU00:FS00:0xa7:     Author: Joseph Coffland <joseph@cauldrondevelopment.com>
06:25:49:WU00:FS00:0xa7:       Args: -dir 00 -suffix 01 -version 705 -lifeline 1891 -checkpoint 15 -np 8
06:25:49:WU00:FS00:0xa7:     Config: <none>
06:25:49:WU00:FS00:0xa7:************************************ Build *************************************
06:25:49:WU00:FS00:0xa7:    Version: 0.0.17
06:25:49:WU00:FS00:0xa7:       Date: Apr 27 2018
06:25:49:WU00:FS00:0xa7:       Time: 19:09:21
06:25:49:WU00:FS00:0xa7: Repository: Git
06:25:49:WU00:FS00:0xa7:   Revision: 21359963583d09ec2063ef946399441c4df4ccd7
06:25:49:WU00:FS00:0xa7:     Branch: master
06:25:49:WU00:FS00:0xa7:   Compiler: GNU 6.3.0 20170516
06:25:49:WU00:FS00:0xa7:    Options: -std=gnu++98 -O3 -funroll-loops
06:25:49:WU00:FS00:0xa7:   Platform: linux2 4.14.0-3-amd64
06:25:49:WU00:FS00:0xa7:       Bits: 64
06:25:49:WU00:FS00:0xa7:       Mode: Release
06:25:49:WU00:FS00:0xa7:       SIMD: avx_256
06:25:49:WU00:FS00:0xa7:************************************ System ************************************
06:25:49:WU00:FS00:0xa7:        CPU: Intel(R) Core(TM) i7-4790K CPU @ 4.00GHz
06:25:49:WU00:FS00:0xa7:     CPU ID: GenuineIntel Family 6 Model 60 Stepping 3
06:25:49:WU00:FS00:0xa7:       CPUs: 8
06:25:49:WU00:FS00:0xa7:     Memory: 31.30GiB
06:25:49:WU00:FS00:0xa7:Free Memory: 29.68GiB
06:25:49:WU00:FS00:0xa7:    Threads: POSIX_THREADS
06:25:49:WU00:FS00:0xa7: OS Version: 4.15
06:25:49:WU00:FS00:0xa7:Has Battery: false
06:25:49:WU00:FS00:0xa7: On Battery: false
06:25:49:WU00:FS00:0xa7: UTC Offset: -5
06:25:49:WU00:FS00:0xa7:        PID: 1895
06:25:49:WU00:FS00:0xa7:        CWD: /var/lib/fahclient/work
06:25:49:WU00:FS00:0xa7:         OS: Linux 4.15.0-22-generic x86_64
06:25:49:WU00:FS00:0xa7:    OS Arch: AMD64
06:25:49:WU00:FS00:0xa7:********************************************************************************
06:25:49:WU00:FS00:0xa7:Project: 13810 (Run 0, Clone 300, Gen 81)
06:25:49:WU00:FS00:0xa7:Unit: 0x0000005f80fccb025a9197d073136a3a
06:25:49:WU00:FS00:0xa7:Digital signatures verified
06:25:49:WU00:FS00:0xa7:Calling: mdrun -s frame81.tpr -o frame81.trr -x frame81.xtc -cpi state.cpt -cpt 15 -nt 8
06:25:49:WU00:FS00:0xa7:Steps: first=20250000 total=250000
06:25:49:WU00:FS00:0xa7:Completed 10175 out of 250000 steps (4%)
06:26:08:Adding folding slot 01: PAUSED gpu:0:GP104 [GeForce GTX 1080] 8873 (by user)
06:26:08:Saving configuration to /etc/fahclient/config.xml
06:26:08:<config>
06:26:08:  <!-- HTTP Server -->
06:26:08:  <allow v='127.0.0.1 192.168.5.0/24'/>
06:26:08:
06:26:08:  <!-- Network -->
06:26:08:  <proxy v=':8080'/>
06:26:08:
06:26:08:  <!-- Remote Command Server -->
06:26:08:  <command-allow-no-pass v='127.0.0.1 192.168.5.0/24'/>
06:26:08:
06:26:08:  <!-- Slot Control -->
06:26:08:  <pause-on-start v='true'/>
06:26:08:  <power v='full'/>
06:26:08:
06:26:08:  <!-- User Information -->
06:26:08:  <passkey v='********************************'/>
06:26:08:  <team v='50625'/>
06:26:08:  <user v='Amaruk'/>
06:26:08:
06:26:08:  <!-- Work Unit Control -->
06:26:08:  <next-unit-percentage v='100'/>
06:26:08:
06:26:08:  <!-- Folding Slots -->
06:26:08:  <slot id='0' type='CPU'/>
06:26:08:  <slot id='1' type='GPU'/>
06:26:08:</config>
06:26:08:FS00:Shutting core down
06:26:08:WU00:FS00:0xa7:Caught signal SIGINT(2) on PID 1895
06:26:08:WU00:FS00:0xa7:Exiting, please wait. . .
06:26:10:WU00:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
06:26:10:WU00:FS00:Starting
[93m06:26:10:WARNING:WU00:FS00:Changed SMP threads from 8 to 7 this can cause some work units to fail[0m
06:26:10:WU00:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /var/lib/fahclient/cores/cores.foldingathome.org/Linux/AMD64/AVX/Core_a7.fah/FahCore_a7 -dir 00 -suffix 01 -version 705 -lifeline 1183 -checkpoint 15 -np 7
06:26:10:WU00:FS00:Started FahCore on PID 1909
06:26:10:WU00:FS00:Core PID:1913
06:26:10:WU00:FS00:FahCore 0xa7 started
06:26:11:FS01:Unpaused
06:26:11:WU00:FS00:0xa7:*********************** Log Started 2018-06-02T06:26:10Z ***********************
06:26:11:WU00:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
06:26:11:WU00:FS00:0xa7:       Type: 0xa7
06:26:11:WU00:FS00:0xa7:       Core: Gromacs
06:26:11:WU00:FS00:0xa7:    Website: https://foldingathome.org/
06:26:11:WU00:FS00:0xa7:  Copyright: (c) 2009-2018 foldingathome.org
06:26:11:WU00:FS00:0xa7:     Author: Joseph Coffland <joseph@cauldrondevelopment.com>
06:26:11:WU00:FS00:0xa7:       Args: -dir 00 -suffix 01 -version 705 -lifeline 1909 -checkpoint 15 -np 7
06:26:11:WU00:FS00:0xa7:     Config: <none>
06:26:11:WU00:FS00:0xa7:************************************ Build *************************************
06:26:11:WU00:FS00:0xa7:    Version: 0.0.17
06:26:11:WU00:FS00:0xa7:       Date: Apr 27 2018
06:26:11:WU00:FS00:0xa7:       Time: 19:09:21
06:26:11:WU00:FS00:0xa7: Repository: Git
06:26:11:WU00:FS00:0xa7:   Revision: 21359963583d09ec2063ef946399441c4df4ccd7
06:26:11:WU00:FS00:0xa7:     Branch: master
06:26:11:WU00:FS00:0xa7:   Compiler: GNU 6.3.0 20170516
06:26:11:WU00:FS00:0xa7:    Options: -std=gnu++98 -O3 -funroll-loops
06:26:11:WU00:FS00:0xa7:   Platform: linux2 4.14.0-3-amd64
06:26:11:WU00:FS00:0xa7:       Bits: 64
06:26:11:WU00:FS00:0xa7:       Mode: Release
06:26:11:WU00:FS00:0xa7:       SIMD: avx_256
06:26:11:WU00:FS00:0xa7:************************************ System ************************************
06:26:11:WU00:FS00:0xa7:        CPU: Intel(R) Core(TM) i7-4790K CPU @ 4.00GHz
06:26:11:WU00:FS00:0xa7:     CPU ID: GenuineIntel Family 6 Model 60 Stepping 3
06:26:11:WU00:FS00:0xa7:       CPUs: 8
06:26:11:WU00:FS00:0xa7:     Memory: 31.30GiB
06:26:11:WU00:FS00:0xa7:Free Memory: 29.65GiB
06:26:11:WU00:FS00:0xa7:    Threads: POSIX_THREADS
06:26:11:WU00:FS00:0xa7: OS Version: 4.15
06:26:11:WU00:FS00:0xa7:Has Battery: false
06:26:11:WU00:FS00:0xa7: On Battery: false
06:26:11:WU00:FS00:0xa7: UTC Offset: -5
06:26:11:WU00:FS00:0xa7:        PID: 1913
06:26:11:WU00:FS00:0xa7:        CWD: /var/lib/fahclient/work
06:26:11:WU00:FS00:0xa7:         OS: Linux 4.15.0-22-generic x86_64
06:26:11:WU00:FS00:0xa7:    OS Arch: AMD64
06:26:11:WU00:FS00:0xa7:********************************************************************************
06:26:11:WU00:FS00:0xa7:Project: 13810 (Run 0, Clone 300, Gen 81)
06:26:11:WU00:FS00:0xa7:Unit: 0x0000005f80fccb025a9197d073136a3a
06:26:11:WU00:FS00:0xa7:Digital signatures verified
06:26:11:WU00:FS00:0xa7:Reducing thread count from 7 to 6 to avoid domain decomposition by a prime number > 3
06:26:11:WU00:FS00:0xa7:Calling: mdrun -s frame81.tpr -o frame81.trr -x frame81.xtc -cpi state.cpt -cpt 15 -nt 6
06:26:11:WU00:FS00:0xa7:Steps: first=20250000 total=250000
06:26:11:WU01:FS01:Connecting to 65.254.110.245:8080
06:26:12:WU01:FS01:Assigned to work server 140.163.4.231
06:26:12:WU01:FS01:Requesting new work unit for slot 01: READY gpu:0:GP104 [GeForce GTX 1080] 8873 from 140.163.4.231
06:26:12:WU01:FS01:Connecting to 140.163.4.231:8080
06:26:12:WU01:FS01:Downloading 16.53MiB
06:26:12:WU00:FS00:0xa7:Completed 10507 out of 250000 steps (4%)
06:26:18:WU01:FS01:Download 80.56%
06:26:19:WU01:FS01:Download complete
06:26:19:WU01:FS01:Received Unit: id:01 state:DOWNLOAD error:NO_ERROR project:11713 run:27 clone:122 gen:48 core:0x21 unit:0x000000498ca304e75ae6351fd08f54cc
06:26:19:WU01:FS01:Downloading core from http://cores.foldingathome.org/Linux/AMD64/NVIDIA/Fermi/Core_21.fah
06:26:19:WU01:FS01:Connecting to cores.foldingathome.org:80
06:26:19:WU01:FS01:FahCore 21: Downloading 3.23MiB
06:26:20:WU01:FS01:FahCore 21: Download complete
06:26:21:WU01:FS01:Valid core signature
06:26:21:WU01:FS01:Unpacked 7.94MiB to cores/cores.foldingathome.org/Linux/AMD64/NVIDIA/Fermi/Core_21.fah/FahCore_21
06:26:21:WU01:FS01:Starting
06:26:21:WU01:FS01:Running FahCore: /usr/bin/FAHCoreWrapper /var/lib/fahclient/cores/cores.foldingathome.org/Linux/AMD64/NVIDIA/Fermi/Core_21.fah/FahCore_21 -dir 01 -suffix 01 -version 705 -lifeline 1183 -checkpoint 15 -gpu-vendor nvidia -opencl-platform 0 -opencl-device 0 -cuda-device 0 -gpu 0
06:26:21:WU01:FS01:Started FahCore on PID 1927
06:26:21:WU01:FS01:Core PID:1931
06:26:21:WU01:FS01:FahCore 0x21 started
06:26:21:WU01:FS01:0x21:*********************** Log Started 2018-06-02T06:26:21Z ***********************
06:26:21:WU01:FS01:0x21:Project: 11713 (Run 27, Clone 122, Gen 48)
06:26:21:WU01:FS01:0x21:Unit: 0x000000498ca304e75ae6351fd08f54cc
06:26:21:WU01:FS01:0x21:CPU: 0x00000000000000000000000000000000
06:26:21:WU01:FS01:0x21:Machine: 1
06:26:21:WU01:FS01:0x21:Reading tar file core.xml
06:26:21:WU01:FS01:0x21:Reading tar file integrator.xml
06:26:21:WU01:FS01:0x21:Reading tar file state.xml
06:26:21:WU01:FS01:0x21:Reading tar file system.xml
06:26:21:WU01:FS01:0x21:Digital signatures verified
06:26:21:WU01:FS01:0x21:Folding@home GPU Core21 Folding@home Core
06:26:21:WU01:FS01:0x21:Version 0.0.18
06:26:23:Saving configuration to /etc/fahclient/config.xml
06:26:23:<config>
06:26:23:  <!-- HTTP Server -->
06:26:23:  <allow v='127.0.0.1 192.168.5.0/24'/>
06:26:23:
06:26:23:  <!-- Network -->
06:26:23:  <proxy v=':8080'/>
06:26:23:
06:26:23:  <!-- Remote Command Server -->
06:26:23:  <command-allow-no-pass v='127.0.0.1 192.168.5.0/24'/>
06:26:23:
06:26:23:  <!-- Slot Control -->
06:26:23:  <pause-on-start v='true'/>
06:26:23:  <power v='full'/>
06:26:23:
06:26:23:  <!-- User Information -->
06:26:23:  <passkey v='********************************'/>
06:26:23:  <team v='50625'/>
06:26:23:  <user v='Amaruk'/>
06:26:23:
06:26:23:  <!-- Work Unit Control -->
06:26:23:  <next-unit-percentage v='100'/>
06:26:23:
06:26:23:  <!-- Folding Slots -->
06:26:23:  <slot id='0' type='CPU'/>
06:26:23:  <slot id='1' type='GPU'/>
06:26:23:</config>
06:26:28:WU01:FS01:0x21:Completed 0 out of 7500000 steps (0%)
06:26:28:WU01:FS01:0x21:Temperature control disabled. Requirements: single Nvidia GPU, tmax must be < 110 and twait >= 900
06:26:35:FS00:Finishing
06:28:25:WU01:FS01:0x21:Completed 75000 out of 7500000 steps (1%)
06:28:27:WU00:FS00:0xa7:Completed 12500 out of 250000 steps (5%)
06:30:23:WU01:FS01:0x21:Completed 150000 out of 7500000 steps (2%)
06:31:18:WU00:FS00:0xa7:Completed 15000 out of 250000 steps (6%)
06:32:20:WU01:FS01:0x21:Completed 225000 out of 7500000 steps (3%)
[93m06:33:06:WARNING:FS01:Size of positions 2578 does not match topology 2576[0m
06:33:57:WU00:FS00:0xa7:Completed 17500 out of 250000 steps (7%)
06:34:20:WU01:FS01:0x21:Completed 300000 out of 7500000 steps (4%)
06:36:18:WU01:FS01:0x21:Completed 375000 out of 7500000 steps (5%)
06:36:31:WU00:FS00:0xa7:Completed 20000 out of 250000 steps (8%)
06:38:17:WU01:FS01:0x21:Completed 450000 out of 7500000 steps (6%)
06:39:05:WU00:FS00:0xa7:Completed 22500 out of 250000 steps (9%)
[93m06:39:42:WARNING:FS01:Size of positions 2578 does not match topology 2576[0m
06:40:16:WU01:FS01:0x21:Completed 525000 out of 7500000 steps (7%)
06:41:39:WU00:FS00:0xa7:Completed 25000 out of 250000 steps (10%)
06:42:14:WU01:FS01:0x21:Completed 600000 out of 7500000 steps (8%)
06:44:12:WU00:FS00:0xa7:Completed 27500 out of 250000 steps (11%)
06:44:13:WU01:FS01:0x21:Completed 675000 out of 7500000 steps (9%)
06:46:11:WU01:FS01:0x21:Completed 750000 out of 7500000 steps (10%)
[93m06:46:17:WARNING:FS01:Size of positions 2578 does not match topology 2576[0m
06:46:45:WU00:FS00:0xa7:Completed 30000 out of 250000 steps (12%)
06:48:11:WU01:FS01:0x21:Completed 825000 out of 7500000 steps (11%)
06:49:19:WU00:FS00:0xa7:Completed 32500 out of 250000 steps (13%)
06:50:09:WU01:FS01:0x21:Completed 900000 out of 7500000 steps (12%)
06:51:52:WU00:FS00:0xa7:Completed 35000 out of 250000 steps (14%)
06:52:07:WU01:FS01:0x21:Completed 975000 out of 7500000 steps (13%)
[93m06:52:53:WARNING:FS01:Size of positions 2578 does not match topology 2576[0m
06:54:07:WU01:FS01:0x21:Completed 1050000 out of 7500000 steps (14%)
06:54:24:WU00:FS00:0xa7:Completed 37500 out of 250000 steps (15%)
06:56:05:WU01:FS01:0x21:Completed 1125000 out of 7500000 steps (15%)
06:56:57:WU00:FS00:0xa7:Completed 40000 out of 250000 steps (16%)
06:58:03:WU01:FS01:0x21:Completed 1200000 out of 7500000 steps (16%)
[93m06:59:28:WARNING:FS01:Size of positions 2578 does not match topology 2576[0m
Also, this error only appears in the logs of my V7.5.1 clients.

Although that may be due to the V7.4.4 client running the 367.57 driver.
Image
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foldy
Posts: 2040
Joined: Sat Dec 01, 2012 3:43 pm
Hardware configuration: Folding@Home Client 7.6.13 (1 GPU slots)
Windows 7 64bit
Intel Core i5 2500k@4Ghz
Nvidia gtx 1080ti driver 441

Re: Core 21.0.0.18 update

Post by foldy »

I guess the warning message will only be fixed with a new FahCore_22 which uses the latest OpenMM.
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