Code: Select all
Another bad one I guess?
[code][07:58:31] Project: 3062 (Run 1, Clone 37, Gen 36)
[07:58:31]
[07:58:31] Assembly optimizations on if available.
[07:58:31] Entering M.D.
[07:58:48] on if available.
[07:58:48] Entering M.D.
NNODES=4, MYRANK=2, HOSTNAME=david-desktop
NNODES=4, MYRANK=3, HOSTNAME=david-desktop
NNODES=4, MYRANK=0, HOSTNAME=david-desktop
NNODES=4, MYRANK=1, HOSTNAME=david-desktop
NODEID=3 argc=15
NODEID=2 argc=15
NODEID=1 argc=15
NODEID=0 argc=15
Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2004, The GROMACS development team,
check out http://www.gromacs.org for more information.
This inclusion of Gromacs code in the Folding@Home Core is under
a special license (see http://folding.stanford.edu/gromacs.html)
specially granted to Stanford by the copyright holders. If you
are interested in using Gromacs, visit www.gromacs.org where
you can download a free version of Gromacs under
the terms of the GNU General Public License (GPL) as published
by the Free Software Foundation; either version 2 of the License,
or (at your option) any later version.
starting mdrun 'p3062_lambda5_99sb'
5000000 steps, 10000.0 ps.
[07:58:55] 062_lambda5_99sb
[07:58:55] Writing local files
[07:58:55] Extra SSE bExtra SSEWriting local files
[07:58:55] Completed 0 out of 5000000 steps (0 percent)
[08:10:55] Writing local files
[08:10:55] Completed 50000 out of 5000000 steps (1 percent)
[08:22:58] Writing local files
[08:22:58] Completed 100000 out of 5000000 steps (2 percent)
[08:35:03] Writing local files
[08:35:03] Completed 150000 out of 5000000 steps (3 percent)
[08:47:07] Writing local files
[08:47:07] Completed 200000 out of 5000000 steps (4 percent)
[08:59:07] Writing local files
[08:59:07] Completed 250000 out of 5000000 steps (5 percent)
[09:11:10] Writing local files
[09:11:10] Completed 300000 out of 5000000 steps (6 percent)
[09:23:13] Writing local files
[09:23:13] Completed 350000 out of 5000000 steps (7 percent)
[09:35:17] Writing local files
[09:35:17] Completed 400000 out of 5000000 steps (8 percent)
[09:47:21] Writing local files
[09:47:21] Completed 450000 out of 5000000 steps (9 percent)
[09:59:21] Writing local files
[09:59:21] Completed 500000 out of 5000000 steps (10 percent)
[10:11:25] Writing local files
[10:11:25] Completed 550000 out of 5000000 steps (11 percent)
[10:23:28] Writing local files
[10:23:28] Completed 600000 out of 5000000 steps (12 percent)
[10:35:32] Writing local files
[10:35:32] Completed 650000 out of 5000000 steps (13 percent)
[10:47:35] Writing local files
[10:47:35] Completed 700000 out of 5000000 steps (14 percent)
[10:59:38] Writing local files
[10:59:38] Completed 750000 out of 5000000 steps (15 percent)
[11:11:42] Writing local files
[11:11:43] Completed 800000 out of 5000000 steps (16 percent)
[11:23:42] Writing local files
[11:23:42] Completed 850000 out of 5000000 steps (17 percent)
[11:35:48] Writing local files
[11:35:48] Completed 900000 out of 5000000 steps (18 percent)
[11:47:51] Writing local files
[11:47:51] Completed 950000 out of 5000000 steps (19 percent)
[11:55:42] Warning: long 1-4 interactions
[0]0:Return code = 0, signaled with Segmentation fault
[0]1:Return code = 0, signaled with Segmentation fault
[0]2:Return code = 0, signaled with Segmentation fault
[0]3:Return code = 0, signaled with Segmentation fault
[11:55:46] CoreStatus = 0 (0)
[11:55:46] Client-core communications error: ERROR 0x0
[11:55:46] Deleting current work unit & continuing...
[0]0:Return code = 18
[0]1:Return code = 0, signaled with Quit
[0]2:Return code = 0, signaled with Quit
[0]3:Return code = 0, signaled with Quit
[12:00:07] - Preparing to get new work unit...
[12:00:07] + Attempting to get work packet
[12:00:07] - Connecting to assignment server
[12:00:13] - Successful: assigned to (171.64.65.63).
[12:00:13] + News From Folding@Home: Welcome to Folding@Home
[12:00:13] Loaded queue successfully.
[12:00:41] + Closed connections
[12:00:46]
[12:00:46] + Processing work unit
[12:00:46] Core required: FahCore_a1.exe
[12:00:46] Core found.
[12:00:46] Working on Unit 04 [April 16 12:00:46]
[12:00:46] + Working ...
[12:00:46]
[12:00:46] *------------------------------*
[12:00:46] Folding@Home Gromacs SMP Core
[12:00:46] Version 1.74 (November 27, 2006)
[12:00:46]
[12:00:46] Preparing to commence simulation
[12:00:46] - Ensuring status. Please wait.
[12:01:03] - Assembly optimizations manually forced on.
[12:01:03] - Not checking prior termination.
[12:01:03] - Expanded 608619 -> 3266045 (decompressed 536.6 percent)
[12:01:03] - Starting from initial work packet
[12:01:03]
[12:01:03] Project: 3062 (Run 1, Clone 37, Gen 36)
[12:01:03]
[12:01:03] Assembly optimizations on if available.
[12:01:03] Entering M.D.
NNODES=4, MYRANK=2, HOSTNAME=david-desktop
NNODES=4, MYRANK=1, HOSTNAME=david-desktop
NNODES=4, MYRANK=3, HOSTNAME=david-desktop
NNODES=4, MYRANK=0, HOSTNAME=david-desktop
NODEID=3 argc=15
NODEID=1 argc=15
NODEID=2 argc=15
NODEID=0 argc=15
Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2004, The GROMACS development team,
check out http://www.gromacs.org for more information.
This inclusion of Gromacs code in the Folding@Home Core is under
a special license (see http://folding.stanford.edu/gromacs.html)
specially granted to Stanford by the copyright holders. If you
are interested in using Gromacs, visit www.gromacs.org where
you can download a free version of Gromacs under
the terms of the GNU General Public License (GPL) as published
by the Free Software Foundation; either version 2 of the License,
or (at your option) any later version.
[12:01:09] Rejecting checkpoint
starting mdrun 'p3062_lambda5_99sb'
5000000 steps, 10000.0 ps.
[12:01:10] Protein: p3062_lambda5_99sbExtra SSE boost OK.
[12:01:10]
[12:01:10] Extra SSE boost OK.
[12:01:10] Writing local files
[12:01:10] Completed 0 out of 5000000 steps (0 percent)
[12:13:12] Writing local files
[12:13:12] Completed 50000 out of 5000000 steps (1 percent)
[12:25:13] Writing local files
[12:25:13] Completed 100000 out of 5000000 steps (2 percent)
[12:37:15] Writing local files
[12:37:15] Completed 150000 out of 5000000 steps (3 percent)
[12:49:19] Writing local files
[12:49:19] Completed 200000 out of 5000000 steps (4 percent)
[13:01:21] Writing local files
[13:01:21] Completed 250000 out of 5000000 steps (5 percent)
[13:13:24] Writing local files
[13:13:24] Completed 300000 out of 5000000 steps (6 percent)
[13:25:26] Writing local files
[13:25:26] Completed 350000 out of 5000000 steps (7 percent)
[13:37:31] Writing local files
[13:37:31] Completed 400000 out of 5000000 steps (8 percent)
[13:49:37] Writing local files
[13:49:37] Completed 450000 out of 5000000 steps (9 percent)
[14:01:40] Writing local files
[14:01:40] Completed 500000 out of 5000000 steps (10 percent)
[14:13:42] Writing local files
[14:13:42] Completed 550000 out of 5000000 steps (11 percent)
[14:25:40] Writing local files
[14:25:40] Completed 600000 out of 5000000 steps (12 percent)
[14:37:45] Writing local files
[14:37:45] Completed 650000 out of 5000000 steps (13 percent)
[14:49:50] Writing local files
[14:49:50] Completed 700000 out of 5000000 steps (14 percent)
[15:01:55] Writing local files
[15:01:55] Completed 750000 out of 5000000 steps (15 percent)
[15:13:58] Writing local files
[15:13:58] Completed 800000 out of 5000000 steps (16 percent)
[15:26:02] Writing local files
[15:26:02] Completed 850000 out of 5000000 steps (17 percent)
[15:38:09] Writing local files
[15:38:09] Completed 900000 out of 5000000 steps (18 percent)
[15:50:12] Writing local files
[15:50:12] Completed 950000 out of 5000000 steps (19 percent)
[15:58:05] Warning: long 1-4 interactions
[0]0:Return code = 0, signaled with Segmentation fault
[0]1:Return code = 0, signaled with Segmentation fault
[0]2:Return code = 0, signaled with Segmentation fault
[0]3:Return code = 0, signaled with Segmentation fault
[15:58:09] CoreStatus = 0 (0)
[15:58:09] Client-core communications error: ERROR 0x0
[15:58:09] Deleting current work unit & continuing...
[0]0:Return code = 18
[0]1:Return code = 0, signaled with Quit
[0]2:Return code = 0, signaled with Quit
[0]3:Return code = 0, signaled with Quit
[16:02:30] - Preparing to get new work unit...
[16:02:30] + Attempting to get work packet
[16:02:30] - Connecting to assignment server
[16:02:31] - Successful: assigned to (171.64.65.63).
[16:02:31] + News From Folding@Home: Welcome to Folding@Home
[16:02:31] Loaded queue successfully.
[16:02:33] + Closed connections
[16:02:38]
[16:02:38] + Processing work unit
[16:02:38] Core required: FahCore_a1.exe
[16:02:38] Core found.
[16:02:38] Working on Unit 05 [April 16 16:02:38]
[16:02:38] + Working ...
[16:02:38]
[16:02:38] *------------------------------*
[16:02:38] Folding@Home Gromacs SMP Core
[16:02:38] Version 1.74 (November 27, 2006)
[16:02:38]
[16:02:38] Preparing to commence simulation
[16:02:38] - Ensuring status. Please wait.
[16:02:55] - Assembly optimizations manually forced on.
[16:02:55] - Not checking prior termination.
[16:02:55] - Expanded 608619 -> 3266045 (decompressed 536.6 percent)
[16:02:55] - Starting from initial work packet
[16:02:55]
[16:02:55] Project: 3062 (Run 1, Clone 37, Gen 36)
[16:02:55]
[16:02:55] Assembly optimizations on if available.
[16:02:55] Entering M.D.
NNODES=4, MYRANK=2, HOSTNAME=david-desktop
NNODES=4, MYRANK=3, HOSTNAME=david-desktop
NNODES=4, MYRANK=0, HOSTNAME=david-desktop
NNODES=4, MYRANK=1, HOSTNAME=david-desktop
NODEID=3 argc=15
NODEID=2 argc=15
NODEID=1 argc=15
NODEID=0 argc=15
Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2004, The GROMACS development team,
check out http://www.gromacs.org for more information.
This inclusion of Gromacs code in the Folding@Home Core is under
a special license (see http://folding.stanford.edu/gromacs.html)
specially granted to Stanford by the copyright holders. If you
are interested in using Gromacs, visit www.gromacs.org where
you can download a free version of Gromacs under
the terms of the GNU General Public License (GPL) as published
by the Free Software Foundation; either version 2 of the License,
or (at your option) any later version.
[16:03:01] Rejecting checkpoint
starting mdrun 'p3062_lambda5_99sb'
5000000 steps, 10000.0 ps.
[16:03:02] Protein: p3062_lambda5_99sbExtra SSE boost OK.
[16:03:02]
[16:03:02] Extra SSE boost OK.
[16:03:02] Writing local files
[16:03:02] Completed 0 out of 5000000 steps (0 percent)
[16:14:59] Writing local files
[16:14:59] Completed 50000 out of 5000000 steps (1 percent)
[16:27:02] Writing local files
[16:27:02] Completed 100000 out of 5000000 steps (2 percent)
[16:39:06] Writing local files
[16:39:06] Completed 150000 out of 5000000 steps (3 percent)
[16:51:07] Writing local files
[16:51:07] Completed 200000 out of 5000000 steps (4 percent)
[17:03:10] Writing local files
[17:03:10] Completed 250000 out of 5000000 steps (5 percent)
[17:15:11] Writing local files
[17:15:11] Completed 300000 out of 5000000 steps (6 percent)
[17:27:11] Writing local files
[17:27:11] Completed 350000 out of 5000000 steps (7 percent)
[17:39:11] Writing local files
[17:39:11] Completed 400000 out of 5000000 steps (8 percent)
[17:51:11] Writing local files
[17:51:11] Completed 450000 out of 5000000 steps (9 percent)
[18:03:12] Writing local files
[18:03:12] Completed 500000 out of 5000000 steps (10 percent)