Project: 6099 (Run 8, Clone 25, Gen 6)

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kasson
Pande Group Member
Posts: 1459
Joined: Thu Nov 29, 2007 9:37 pm

Re: Project: 6099 (Run 8, Clone 25, Gen 6)

Post by kasson »

Blocking a server is not recommended as a way to avoid assignment. Folding@Home is displaying the intended behavior in trying to contact the server as assigned.
Mytheroo, are you running with all 24 cores on SMP?
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Mytheroo
Posts: 5
Joined: Fri Feb 03, 2012 10:13 pm

Re: Project: 6099 (Run 8, Clone 25, Gen 6)

Post by Mytheroo »

hi kasson, sorry if any misunderstanding, am using an Intel Core i7-2600k - 4cores, 8 threads, and yes its using 8 threads (-smp flag).

I agree blocking a server shouldn't be recommended as it didn't work :-), my question was how do I stop my PC getting this bad WU?
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kasson
Pande Group Member
Posts: 1459
Joined: Thu Nov 29, 2007 9:37 pm

Re: Project: 6099 (Run 8, Clone 25, Gen 6)

Post by kasson »

Try deleting machinedependent.dat in your Folding@Home folder (to be safe, cleaning up queue.dat and work/* might also help).
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patrickdarcy
Posts: 1
Joined: Wed Mar 30, 2011 6:06 pm

what does this mean ?

Post by patrickdarcy »

since saturday i keep getting this when i want folding to run.

Code: Select all

Reading file work/wudata_06.tpr, VERSION 4.5.1-dev-20100930-afd66-dirty (single precision)
[17:10:28] Mapping NT from 4 to 4 
Starting 4 threads
Making 1D domain decomposition 1 x 4 x 1
starting mdrun 'Solvated system'
3500000 steps,  14000.0 ps (continuing from step 3000000,  12000.0 ps).

Step 3000000, time 12000 (ps)  LINCS WARNING
relative constraint deviation after LINCS:
rms 0.848165, max 50.503162 (between atoms 20706 and 20705)
bonds that rotated more than 90 degrees:
 atom 1 atom 2  angle  previous, current, constraint length
  20703  20702  166.5    0.1360   0.9761      0.1360
  20705  20703  109.9    0.1530   3.1305      0.1530
  20704  20703  133.5    0.1230   1.2465      0.1230
  20706  20705   97.8    0.1530   7.8800      0.1530
  20707  20706  103.7    0.1530   4.5237      0.1530
  20708  20707  111.0    0.1530   2.9837      0.1530
  20711  20710  121.1    0.1530   0.4976      0.1530
  20712  20711  101.5    0.1530   0.4460      0.1530
  20709  20708  159.0    0.1530   1.1471      0.1530
  20710  20709  117.0    0.1530   1.1070      0.1530
  20682  20681  119.3    0.1530   1.3358      0.1530
  20702  20682  122.0    0.1430   1.8824      0.1430
  20683  20682  113.6    0.1530   1.6445      0.1530
  20684  20683  112.6    0.1430   1.1899      0.1430
  20685  20684  118.9    0.1360   0.5867      0.1360
  20680  20677  118.6    0.1610   0.5198      0.1610
  20681  20680  113.0    0.1430   1.1514      0.1430

step 3000000: Water molecule starting at atom 140355 can not be settled.
Check for bad contacts and/or reduce the timestep if appropriate.
[17:10:29] Completed 0 out of 500000 steps  (0%)
[17:10:29] CoreStatus = 0 (0)
[17:10:29] Sending work to server
[17:10:29] Project: 6099 (Run 8, Clone 25, Gen 6)
[17:10:29] - Error: Could not get length of results file work/wuresults_06.da
[17:10:29] - Error: Could not read unit 06 file. Removing from queue.
[17:10:29] - Preparing to get new work unit...
[17:10:29] Cleaning up work directory
[17:10:29] + Attempting to get work packet
[17:10:29] Passkey found
[17:10:29] - Connecting to assignment server
[17:10:30] - Successful: assigned to (128.143.231.202).
[17:10:30] + News From Folding@Home: Welcome to Folding@Home
[17:10:30] Loaded queue successfully.
i get this basically over and over.

Mod Edit: Added Code Tags - PantherX
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Stonecold
Posts: 332
Joined: Sun Dec 25, 2011 9:20 pm

Re: what does this mean ?

Post by Stonecold »

Are you having problems with any other projects or just that specific one?
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bruce
Posts: 20824
Joined: Thu Nov 29, 2007 10:13 pm
Location: So. Cal.

Re: what does this mean ?

Post by bruce »

The real question is "Which WU are you running?" ... to be followed by "Are you having problems with any other WUs or just that specific one?"
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Stonecold
Posts: 332
Joined: Sun Dec 25, 2011 9:20 pm

Re: what does this mean ?

Post by Stonecold »

bruce wrote:The real question is "Which WU are you running?" ... to be followed by "Are you having problems with any other WUs or just that specific one?"
Isn't it Project: 6099 (Run 8, Clone 25, Gen 6)?
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Mytheroo
Posts: 5
Joined: Fri Feb 03, 2012 10:13 pm

Re: Project: 6099 (Run 8, Clone 25, Gen 6)

Post by Mytheroo »

i dont have a michinedependent.dat file in that folder. I deleted queue.dat and everything in the work folder. Situation the same, still connects to same server and grabs this bad WU.


ok, just did a configonly and changed the machine ID, it is now working on a 6097 project :-)
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toTOW
Site Moderator
Posts: 6349
Joined: Sun Dec 02, 2007 10:38 am
Location: Bordeaux, France
Contact:
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Re: what does this mean ?

Post by toTOW »

If it's Project: 6099 (Run 8, Clone 25, Gen 6), four donors had troubles with it ... so I marked it as a bad WU.
Image

Folding@Home beta tester since 2002. Folding Forum moderator since July 2008.
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bruce
Posts: 20824
Joined: Thu Nov 29, 2007 10:13 pm
Location: So. Cal.

Re: what does this mean ?

Post by bruce »

Stonecold wrote:Isn't it Project: 6099 (Run 8, Clone 25, Gen 6)?
Oops. Missed that. (I expect to find it near the top of the log segment, and that had been cut off.

OK, others have had trouble with this WU.
The WU (P6099,R8,C25,G6) has been reported as a bad WU. Note that the list of reported WUs are stopped daily at 8am pacific time.

Edit: Ok, toTOW got to it before I did. No harm there.
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Stonecold
Posts: 332
Joined: Sun Dec 25, 2011 9:20 pm

Re: what does this mean ?

Post by Stonecold »

patrickdarcy wrote:since saturday i keep getting this when i want folding to run.

Code: Select all

Reading file work/wudata_06.tpr, VERSION 4.5.1-dev-20100930-afd66-dirty (single precision)
[17:10:28] Mapping NT from 4 to 4 
Starting 4 threads
Making 1D domain decomposition 1 x 4 x 1
starting mdrun 'Solvated system'
3500000 steps,  14000.0 ps (continuing from step 3000000,  12000.0 ps).

Step 3000000, time 12000 (ps)  LINCS WARNING
relative constraint deviation after LINCS:
rms 0.848165, max 50.503162 (between atoms 20706 and 20705)
bonds that rotated more than 90 degrees:
 atom 1 atom 2  angle  previous, current, constraint length
  20703  20702  166.5    0.1360   0.9761      0.1360
  20705  20703  109.9    0.1530   3.1305      0.1530
  20704  20703  133.5    0.1230   1.2465      0.1230
  20706  20705   97.8    0.1530   7.8800      0.1530
  20707  20706  103.7    0.1530   4.5237      0.1530
  20708  20707  111.0    0.1530   2.9837      0.1530
  20711  20710  121.1    0.1530   0.4976      0.1530
  20712  20711  101.5    0.1530   0.4460      0.1530
  20709  20708  159.0    0.1530   1.1471      0.1530
  20710  20709  117.0    0.1530   1.1070      0.1530
  20682  20681  119.3    0.1530   1.3358      0.1530
  20702  20682  122.0    0.1430   1.8824      0.1430
  20683  20682  113.6    0.1530   1.6445      0.1530
  20684  20683  112.6    0.1430   1.1899      0.1430
  20685  20684  118.9    0.1360   0.5867      0.1360
  20680  20677  118.6    0.1610   0.5198      0.1610
  20681  20680  113.0    0.1430   1.1514      0.1430

step 3000000: Water molecule starting at atom 140355 can not be settled.
Check for bad contacts and/or reduce the timestep if appropriate.
[17:10:29] Completed 0 out of 500000 steps  (0%)
[17:10:29] CoreStatus = 0 (0)
[17:10:29] Sending work to server
[17:10:29] Project: 6099 (Run 8, Clone 25, Gen 6)
[17:10:29] - Error: Could not get length of results file work/wuresults_06.da
[17:10:29] - Error: Could not read unit 06 file. Removing from queue.
[17:10:29] - Preparing to get new work unit...
[17:10:29] Cleaning up work directory
[17:10:29] + Attempting to get work packet
[17:10:29] Passkey found
[17:10:29] - Connecting to assignment server
[17:10:30] - Successful: assigned to (128.143.231.202).
[17:10:30] + News From Folding@Home: Welcome to Folding@Home
[17:10:30] Loaded queue successfully.
i get this basically over and over.
You can get the most help if you put this in "Issues with a specific WU" board. In fact, I think there is already a topic about this specific WU: http://foldingforum.org/viewtopic.php?f=19&t=20611.

Mod Edit: Topics Merged - PantherX
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arcon
Posts: 8
Joined: Tue Jun 29, 2010 8:17 pm

Re: Project: 6099 (Run 8, Clone 25, Gen 6)

Post by arcon »

I had to change the machine ID to get rid of this project.

Code: Select all

[00:33:56] *------------------------------*
[00:33:56] Folding@Home Gromacs SMP Core
[00:33:56] Version 2.27 (Dec. 15, 2010)
[00:33:56] 
[00:33:56] Preparing to commence simulation
[00:33:56] - Looking at optimizations...
[00:33:56] - Created dyn
[00:33:56] - Files status OK
[00:33:57] - Expanded 3816585 -> 4169428 (decompressed 109.2 percent)
[00:33:57] Called DecompressByteArray: compressed_data_size=3816585 data_size=4169428, decompressed_data_size=4169428 diff=0
[00:33:57] - Digital signature verified
[00:33:57] 
[00:33:57] Project: 6099 (Run 8, Clone 25, Gen 6)
[00:33:57] 
[00:33:57] Assembly optimizations on if available.
[00:33:57] Entering M.D.
[00:34:03] Mapping NT from 8 to 8 
[00:34:03] Completed 0 out of 500000 steps  (0%)
[00:34:13] CoreStatus = C0000005 (-1073741819)
[00:34:13] Client-core communications error: ERROR 0xc0000005
[00:34:13] Deleting current work unit & continuing...
[00:34:27] - Preparing to get new work unit...
[00:34:27] Cleaning up work directory
[00:34:27] + Attempting to get work packet
[00:34:27] Passkey found
[00:34:27] - Connecting to assignment server
[00:34:28] - Successful: assigned to (128.143.231.202).
[00:34:28] + News From Folding@Home: Welcome to Folding@Home
[00:34:28] Loaded queue successfully.
[00:34:51] + Closed connections
[00:34:56] 
[00:34:56] + Processing work unit
[00:34:56] Core required: FahCore_a3.exe
[00:34:56] Core found.
[00:34:56] Working on queue slot 02 [February 13 00:34:56 UTC]
[00:34:56] + Working ...
[00:34:57] 
[00:34:57] *------------------------------*
[00:34:57] Folding@Home Gromacs SMP Core
[00:34:57] Version 2.27 (Dec. 15, 2010)
[00:34:57] 
[00:34:57] Preparing to commence simulation
[00:34:57] - Looking at optimizations...
[00:34:57] - Created dyn
[00:34:57] - Files status OK
[00:34:57] - Expanded 3816585 -> 4169428 (decompressed 109.2 percent)
[00:34:57] Called DecompressByteArray: compressed_data_size=3816585 data_size=4169428, decompressed_data_size=4169428 diff=0
[00:34:57] - Digital signature verified
[00:34:57] 
[00:34:57] Project: 6099 (Run 8, Clone 25, Gen 6)
[00:34:57] 
[00:34:57] Assembly optimizations on if available.
[00:34:57] Entering M.D.
[00:35:03] Mapping NT from 8 to 8 
[00:35:03] Completed 0 out of 500000 steps  (0%)
[00:35:11] CoreStatus = C0000005 (-1073741819)
[00:35:11] Client-core communications error: ERROR 0xc0000005
[00:35:11] Deleting current work unit & continuing...
[00:35:25] - Preparing to get new work unit...
[00:35:25] Cleaning up work directory
[00:35:25] + Attempting to get work packet
[00:35:25] Passkey found
[00:35:25] - Connecting to assignment server
[00:35:26] - Successful: assigned to (128.143.231.202).
[00:35:26] + News From Folding@Home: Welcome to Folding@Home
[00:35:26] Loaded queue successfully.
[00:35:41] + Closed connections
[00:35:46] 
[00:35:46] + Processing work unit
[00:35:46] Core required: FahCore_a3.exe
[00:35:46] Core found.
[00:35:46] Working on queue slot 03 [February 13 00:35:46 UTC]
[00:35:46] + Working ...
[00:35:46] 
[00:35:46] *------------------------------*
[00:35:46] Folding@Home Gromacs SMP Core
[00:35:46] Version 2.27 (Dec. 15, 2010)
[00:35:46] 
[00:35:46] Preparing to commence simulation
[00:35:46] - Looking at optimizations...
[00:35:46] - Created dyn
[00:35:46] - Files status OK
[00:35:46] - Expanded 3816585 -> 4169428 (decompressed 109.2 percent)
[00:35:46] Called DecompressByteArray: compressed_data_size=3816585 data_size=4169428, decompressed_data_size=4169428 diff=0
[00:35:46] - Digital signature verified
[00:35:46] 
[00:35:46] Project: 6099 (Run 8, Clone 25, Gen 6)
[00:35:46] 
[00:35:46] Assembly optimizations on if available.
[00:35:46] Entering M.D.
[00:35:52] Mapping NT from 8 to 8 
[00:35:52] Completed 0 out of 500000 steps  (0%)
[00:36:00] CoreStatus = C0000005 (-1073741819)
[00:36:00] Client-core communications error: ERROR 0xc0000005
[00:36:00] - Attempting to download new core...
[00:36:00] + Downloading new core: FahCore_a3.exe
[00:36:02] + 10240 bytes downloaded

Code: Select all

[00:36:23] + 3028785 bytes downloaded
[00:36:23] Verifying core Core_a3.fah...
[00:36:23] Signature is VALID
[00:36:23] 
[00:36:23] Trying to unzip core FahCore_a3.exe
[00:36:24] Decompressed FahCore_a3.exe (10057216 bytes) successfully
[00:36:29] + Core successfully engaged
[00:36:29] Deleting current work unit & continuing...
[00:36:43] - Preparing to get new work unit...
[00:36:43] Cleaning up work directory
[00:36:43] + Attempting to get work packet
[00:36:43] Passkey found
[00:36:43] - Connecting to assignment server
[00:36:44] - Successful: assigned to (128.143.231.202).
[00:36:44] + News From Folding@Home: Welcome to Folding@Home
[00:36:44] Loaded queue successfully.
[00:37:02] + Closed connections
[00:37:07] 
[00:37:07] + Processing work unit
[00:37:07] Core required: FahCore_a3.exe
[00:37:07] Core found.
[00:37:07] Working on queue slot 04 [February 13 00:37:07 UTC]
[00:37:07] + Working ...
[00:37:08] 
[00:37:08] *------------------------------*
[00:37:08] Folding@Home Gromacs SMP Core
[00:37:08] Version 2.27 (Dec. 15, 2010)
[00:37:08] 
[00:37:08] Preparing to commence simulation
[00:37:08] - Looking at optimizations...
[00:37:08] - Created dyn
[00:37:08] - Files status OK
[00:37:08] - Expanded 3816585 -> 4169428 (decompressed 109.2 percent)
[00:37:08] Called DecompressByteArray: compressed_data_size=3816585 data_size=4169428, decompressed_data_size=4169428 diff=0
[00:37:08] - Digital signature verified
[00:37:08] 
[00:37:08] Project: 6099 (Run 8, Clone 25, Gen 6)
[00:37:08] 
[00:37:08] Assembly optimizations on if available.
[00:37:08] Entering M.D.
[00:37:14] Mapping NT from 8 to 8 
[00:37:15] Completed 0 out of 500000 steps  (0%)
[00:37:22] CoreStatus = C0000005 (-1073741819)
[00:37:22] Client-core communications error: ERROR 0xc0000005
[00:37:22] Deleting current work unit & continuing...
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