Thank you for all of your help with this; I am happy to say that my computer is now processing WUs again, and it has done two since I last checked it: Project 6880 (Run 669, Clone 2, Gen 116) and Project 6887 (Run 638, Clone 15, Gen 122); it is currently processing Project 6887 (Run 638, Clone 15, Gen 123).
It's great to have it running again, as I was also worried that some nasty hardware bug was causing this.
HendricksSA: in reply to your message, I have my home directory on a USB drive (IDE drive in a USB adaptor) because for some reason, all drives that I've had on the system's nForce2 chipset have developed filesystem r/w errors after some time in use. I initially had the whole system on the board's SATA (SiI 3112), and had frequent read errors. I switched to the nForce2 IDE controller last year, had filesystem errors on that as well, so I changed the RAM modules and still got errors. I think that I changed the PSU too. By that point I was going to 'retire' the computer, but instead, I upgraded Ubuntu and the system got a new lease-of-life. The motherboard is an ABit AN7 and RAM is 1GB (2 x 512MB).
Regarding the verbosity level, it is at 9 and AFAIK, has always been - I don't know why it isn't outputting more to the log. I'm using a shell script to start it:
Code: Select all
lex@spatula:run$ cat fah
./fah6 -verbosity 9 $@
That's all it is - pretty basic, eh? 'ps' shows that the app is running with these args:
Code: Select all
./FahCore_78.exe -dir work/ -suffix 08 -checkpoint 15 -verbose -lifeline 2024 -version 602
I hope that's useful - perhaps a bit too much verbosity from me, and not enough from my FAH client?
Here's the log - edited, because it's huge. This includes a failing WU, and the subsequent successful units. My edits are marked with '...'. The timezone is GMT.
Code: Select all
[22:30:43] + Attempting to get work packet
[22:30:43] - Will indicate memory of 1000 MB
[22:30:43] - Connecting to assignment server
[22:30:43] Connecting to http://assign.stanford.edu:8080/
[22:30:44] Posted data.
[22:30:44] Initial: 43AB; - Successful: assigned to (171.67.108.33).
[22:30:44] + News From Folding@Home: Welcome to Folding@Home
[22:30:45] Loaded queue successfully.
[22:30:45] Connecting to http://171.67.108.33:8080/
[22:30:46] Posted data.
[22:30:46] Initial: 0000; - Receiving payload (expected size: 372206)
[22:30:49] - Downloaded at ~121 kB/s
[22:30:49] - Averaged speed for that direction ~160 kB/s
[22:30:49] + Received work.
[22:30:49] + Closed connections
[22:30:54]
[22:30:54] + Processing work unit
[22:30:54] Core required: FahCore_78.exe
[22:30:54] Core found.
[22:30:54] Working on Unit 05 [May 16 22:30:54]
[22:30:54] + Working ...
[22:30:54] - Calling './FahCore_78.exe -dir work/ -suffix 05 -checkpoint 15 -verbose -lifeline 2024 -version 602'
[22:30:54]
[22:30:54] *------------------------------*
[22:30:54] Folding@Home Gromacs Core
[22:30:54] Version 1.90 (March 8, 2006)
[22:30:54]
[22:30:54] Preparing to commence simulation
[22:30:54] - Looking at optimizations...
[22:30:54] - Created dyn
[22:30:54] - Files status OK
[22:30:54] - Expanded 371694 -> 1798060 (decompressed 483.7 percent)
[22:30:54] - Starting from initial work packet
[22:30:54]
[22:30:54] Project: 6885 (Run 193, Clone 0, Gen 102)
[22:30:54]
[22:30:54] Assembly optimizations on if available.
[22:30:54] Entering M.D.
[22:31:00] Protein: ALZHEIMERS DISEASE AMYLOID
[22:31:00]
[22:31:00] Writing local files
[22:31:09] Extra SSE boost OK.
[22:31:09] Writing local files
[22:31:09] Completed 0 out of 250000 steps (0%)
[22:40:45] Writing local files
[22:40:45] Completed 2500 out of 250000 steps (1%)
[22:50:19] Writing local files
[22:50:19] Completed 5000 out of 250000 steps (2%)
[22:59:54] Writing local files
[22:59:54] Completed 7500 out of 250000 steps (3%)
[23:09:28] Writing local files
[23:09:28] Completed 10000 out of 250000 steps (4%)
[23:19:02] Writing local files
[23:19:02] Completed 12500 out of 250000 steps (5%)
[23:28:38] Writing local files
[23:28:38] Completed 15000 out of 250000 steps (6%)
[23:38:13] Writing local files
[23:38:13] Completed 17500 out of 250000 steps (7%)
[23:38:59] CoreStatus = 0 (0)
[23:38:59] Client-core communications error: ERROR 0x0
[23:38:59]
Folding@Home will go to sleep for 1 day as there have been 5 consecutive Cores executed which failed to complete a work unit.
[23:38:59] (To wake it up early, quit the application and restart it.)
[23:38:59] If problems persist, please visit our website at http://folding.stanford.edu for help.
[23:38:59] + Sleeping...
[00:23:04] - Autosending finished units...
[00:23:04] Trying to send all finished work units
[00:23:04] + No unsent completed units remaining.
[00:23:04] - Autosend completed
[06:23:04] - Autosending finished units...
[06:23:04] Trying to send all finished work units
[06:23:04] + No unsent completed units remaining.
[06:23:04] - Autosend completed
[12:23:04] - Autosending finished units...
[12:23:04] Trying to send all finished work units
[12:23:04] + No unsent completed units remaining.
[12:23:04] - Autosend completed
[18:23:04] - Autosending finished units...
[18:23:04] Trying to send all finished work units
[18:23:04] + No unsent completed units remaining.
[18:23:04] - Autosend completed
[23:38:59] Waking.
[23:38:59] - Attempting to download new core...
[23:38:59] + Downloading new core: FahCore_78.exe
[23:38:59] Downloading core (/~pande/Linux/x86/Core_78.fah from www.stanford.edu)
[23:39:00] Initial: AFDE; + 10240 bytes downloaded
[23:39:00] Initial: CC14; + 20480 bytes downloaded
[23:39:00] Initial: BEE8; + 30720 bytes downloaded
[23:39:00] Initial: DAAF; + 40960 bytes downloaded
[23:39:00] Initial: 1C7A; + 51200 bytes downloaded
[23:39:00] Initial: 5758; + 61440 bytes downloaded
[23:39:01] Initial: 4CCD; + 71680 bytes downloaded
[23:39:01] Initial: 15EF; + 81920 bytes downloaded
[23:39:01] Initial: 48E8; + 92160 bytes downloaded
[23:39:01] Initial: D320; + 102400 bytes downloaded
[23:39:01] Initial: 82DB; + 112640 bytes downloaded
[23:39:01] Initial: 4576; + 122880 bytes downloaded
[23:39:01] Initial: FB62; + 133120 bytes downloaded
[23:39:01] Initial: 71CD; + 143360 bytes downloaded
[23:39:01] Initial: F63A; + 153600 bytes downloaded
[23:39:01] Initial: 0B66; + 163840 bytes downloaded
[23:39:01] Initial: C516; + 174080 bytes downloaded
[23:39:01] Initial: 3E7D; + 184320 bytes downloaded
[23:39:01] Initial: D29C; + 194560 bytes downloaded
[23:39:01] Initial: E3AD; + 204800 bytes downloaded
[23:39:01] Initial: ACFA; + 215040 bytes downloaded
[23:39:01] Initial: 348C; + 225280 bytes downloaded
[23:39:01] Initial: F2B6; + 235520 bytes downloaded
[23:39:01] Initial: CC9E; + 245760 bytes downloaded
[23:39:01] Initial: 1231; + 256000 bytes downloaded
[23:39:02] Initial: 9693; + 266240 bytes downloaded
[23:39:02] Initial: 4073; + 276480 bytes downloaded
[23:39:02] Initial: 616B; + 286720 bytes downloaded
[23:39:02] Initial: 5E96; + 296960 bytes downloaded
[23:39:02] Initial: 4430; + 307200 bytes downloaded
[23:39:02] Initial: B959; + 317440 bytes downloaded
[23:39:02] Initial: 48AC; + 327680 bytes downloaded
[23:39:02] Initial: 7846; + 337920 bytes downloaded
[23:39:02] Initial: 0B78; + 348160 bytes downloaded
[23:39:02] Initial: 653D; + 358400 bytes downloaded
[23:39:02] Initial: B0D6; + 368640 bytes downloaded
[23:39:02] Initial: 841B; + 378880 bytes downloaded
[23:39:02] Initial: 75AF; + 389120 bytes downloaded
[23:39:02] Initial: B47C; + 399360 bytes downloaded
[23:39:02] Initial: 4DC0; + 409600 bytes downloaded
[23:39:03] Initial: 8F7E; + 419840 bytes downloaded
[23:39:03] Initial: 9EF4; + 430080 bytes downloaded
[23:39:03] Initial: 0181; + 440320 bytes downloaded
[23:39:03] Initial: 503C; + 450560 bytes downloaded
[23:39:03] Initial: 2D30; + 460800 bytes downloaded
[23:39:03] Initial: 8867; + 471040 bytes downloaded
[23:39:03] Initial: CE43; + 481280 bytes downloaded
[23:39:03] Initial: 614C; + 491520 bytes downloaded
[23:39:03] Initial: 96F2; + 501760 bytes downloaded
[23:39:03] Initial: 252D; + 512000 bytes downloaded
[23:39:03] Initial: 97FE; + 522240 bytes downloaded
[23:39:03] Initial: 1024; + 532480 bytes downloaded
[23:39:03] Initial: 0666; + 542720 bytes downloaded
[23:39:03] Initial: 53CF; + 552960 bytes downloaded
[23:39:03] Initial: D31E; + 563200 bytes downloaded
[23:39:03] Initial: 1A46; + 573440 bytes downloaded
[23:39:03] Initial: B2C1; + 583680 bytes downloaded
[23:39:03] Initial: 17AF; + 593920 bytes downloaded
[23:39:03] Initial: BE0D; + 604160 bytes downloaded
[23:39:04] Initial: 79C2; + 614400 bytes downloaded
[23:39:04] Initial: 6B14; + 624640 bytes downloaded
[23:39:04] Initial: 1611; + 634880 bytes downloaded
[23:39:04] Initial: 4B64; + 645120 bytes downloaded
[23:39:04] Initial: E520; + 655360 bytes downloaded
[23:39:04] Initial: ADD2; + 665600 bytes downloaded
[23:39:04] Initial: 4218; + 675840 bytes downloaded
[23:39:04] Initial: 7E58; + 686080 bytes downloaded
[23:39:04] Initial: 913F; + 696320 bytes downloaded
[23:39:04] Initial: A369; + 706560 bytes downloaded
[23:39:04] Initial: 8E3A; + 716800 bytes downloaded
[23:39:04] Initial: D3A6; + 727040 bytes downloaded
[23:39:10] Initial: D3CB; + 737280 bytes downloaded
[23:39:10] Initial: 6736; + 747520 bytes downloaded
[23:39:10] Initial: 071F; + 757760 bytes downloaded
[23:39:10] Initial: AC46; + 768000 bytes downloaded
[23:39:10] Initial: 1B7F; + 778240 bytes downloaded
[23:39:10] Initial: 1E88; + 788480 bytes downloaded
[23:39:10] Initial: 5A90; + 798720 bytes downloaded
[23:39:10] Initial: 5F2E; + 808960 bytes downloaded
[23:39:10] Initial: AC86; + 819200 bytes downloaded
[23:39:10] Initial: 0E27; + 829440 bytes downloaded
[23:39:10] Initial: 9AFA; + 839680 bytes downloaded
[23:39:10] Initial: 5A8B; + 849920 bytes downloaded
[23:39:10] Initial: 9D8E; + 860160 bytes downloaded
[23:39:10] Initial: 63B7; + 870400 bytes downloaded
[23:39:10] Initial: 7E7F; + 880640 bytes downloaded
[23:39:10] Initial: CC68; + 890880 bytes downloaded
[23:39:10] Initial: 0C12; + 901120 bytes downloaded
[23:39:11] Initial: EA6C; + 911360 bytes downloaded
[23:39:11] Initial: 07EE; + 921600 bytes downloaded
[23:39:11] Initial: 45B7; + 931840 bytes downloaded
[23:39:11] Initial: F8C7; + 942080 bytes downloaded
[23:39:11] Initial: DEE6; + 952320 bytes downloaded
[23:39:11] Initial: C4DF; + 962560 bytes downloaded
[23:39:11] Initial: 5CEC; + 972800 bytes downloaded
[23:39:11] Initial: C871; + 983040 bytes downloaded
[23:39:11] Initial: F427; + 993280 bytes downloaded
[23:39:11] Initial: F6DF; + 1003520 bytes downloaded
[23:39:11] Initial: 19B3; + 1013760 bytes downloaded
[23:39:11] Initial: 1DE1; + 1024000 bytes downloaded
[23:39:11] Initial: F17C; + 1034240 bytes downloaded
[23:39:11] Initial: A200; + 1044480 bytes downloaded
[23:39:11] Initial: 93DE; + 1054720 bytes downloaded
[23:39:11] Initial: 5E7D; + 1064960 bytes downloaded
[23:39:11] Initial: F350; + 1075200 bytes downloaded
[23:39:11] Initial: C54F; + 1085440 bytes downloaded
[23:39:11] Initial: 4D25; + 1095680 bytes downloaded
[23:39:12] Initial: 1289; + 1105920 bytes downloaded
[23:39:12] Initial: B74E; + 1116160 bytes downloaded
[23:39:12] Initial: EF43; + 1126400 bytes downloaded
[23:39:12] Initial: 6B45; + 1134407 bytes downloaded
[23:39:12] Verifying core Core_78.fah...
[23:39:12] Signature is VALID
[23:39:12]
[23:39:12] Trying to unzip core FahCore_78.exe
[23:39:13] Decompressed FahCore_78.exe (3435296 bytes) successfully
[23:39:13] + Core successfully engaged
[23:39:13] Too many errors during run. Purging queue.
[23:39:30]
[23:39:30] + Processing work unit
[23:39:30] Core required: FahCore_78.exe
[23:39:30] Core found.
[23:39:30] Working on Unit 05 [May 17 23:39:30]
[23:39:30] + Working ...
[23:39:30] - Calling './FahCore_78.exe -dir work/ -suffix 05 -checkpoint 15 -verbose -lifeline 2024 -version 602'
[23:39:31]
[23:39:31] *------------------------------*
[23:39:31] Folding@Home Gromacs Core
[23:39:31] Version 1.90 (March 8, 2006)
[23:39:31]
[23:39:31] Preparing to commence simulation
[23:39:31] - Looking at optimizations...
[23:39:31] - Created dyn
[23:39:31] - Files status OK
[23:39:31]
[23:39:31] Folding@home Core Shutdown: MISSING_WORK_FILES
[23:39:31] CoreStatus = 74 (116)
[23:39:31] The core could not find the work files specified. Removing from queue
[23:39:31] Deleting current work unit & continuing...
[23:39:31] Trying to send all finished work units
[23:39:31] + No unsent completed units remaining.
[23:39:31] - Preparing to get new work unit...
[23:39:31] + Attempting to get work packet
[23:39:31] - Will indicate memory of 1000 MB
[23:39:31] - Connecting to assignment server
[23:39:31] Connecting to http://assign.stanford.edu:8080/
[23:39:32] Posted data.
[23:39:32] Initial: 43AB; - Successful: assigned to (171.67.108.33).
[23:39:32] + News From Folding@Home: Welcome to Folding@Home
[23:39:32] Loaded queue successfully.
[23:39:32] Connecting to http://171.67.108.33:8080/
[23:39:34] Posted data.
[23:39:34] Initial: 0000; - Receiving payload (expected size: 375014)
[23:39:35] - Downloaded at ~366 kB/s
[23:39:35] - Averaged speed for that direction ~201 kB/s
[23:39:35] + Received work.
[23:39:35] + Closed connections
[23:39:40]
[23:39:40] + Processing work unit
[23:39:40] Core required: FahCore_78.exe
[23:39:40] Core found.
[23:39:40] Working on Unit 06 [May 17 23:39:40]
[23:39:40] + Working ...
[23:39:40] - Calling './FahCore_78.exe -dir work/ -suffix 06 -checkpoint 15 -verbose -lifeline 2024 -version 602'
[23:39:41]
[23:39:41] *------------------------------*
[23:39:41] Folding@Home Gromacs Core
[23:39:41] Version 1.90 (March 8, 2006)
[23:39:41]
[23:39:41] Preparing to commence simulation
[23:39:41] - Looking at optimizations...
[23:39:41] - Created dyn
[23:39:41] - Files status OK
[23:39:41] - Expanded 374502 -> 1806556 (decompressed 482.3 percent)
[23:39:41] - Starting from initial work packet
[23:39:41]
[23:39:41] Project: 6880 (Run 669, Clone 2, Gen 116)
[23:39:41]
[23:39:41] Assembly optimizations on if available.
[23:39:41] Entering M.D.
[23:39:47] Protein: ALZHEIMER DISEASE AMYLOID
[23:39:47]
[23:39:47] Writing local files
[23:39:56] Extra SSE boost OK.
[23:39:56] Writing local files
[23:39:56] Completed 0 out of 250000 steps (0%)
[23:49:31] Writing local files
[23:49:31] Completed 2500 out of 250000 steps (1%)
[23:59:06] Writing local files
[23:59:06] Completed 5000 out of 250000 steps (2%)
[00:08:41] Writing local files
[00:08:41] Completed 7500 out of 250000 steps (3%)
[00:18:16] Writing local files
[00:18:16] Completed 10000 out of 250000 steps (4%)
[00:23:04] - Autosending finished units...
[00:23:04] Trying to send all finished work units
[00:23:04] + No unsent completed units remaining.
[00:23:04] - Autosend completed
[00:27:53] Writing local files
[00:27:53] Completed 12500 out of 250000 steps (5%)
[00:37:28] Writing local files
[00:37:28] Completed 15000 out of 250000 steps (6%)
[00:47:03] Writing local files
[00:47:03] Completed 17500 out of 250000 steps (7%)
[00:56:37] Writing local files
...
[12:10:09] Completed 195000 out of 250000 steps (78%)
[12:19:45] Writing local files
[12:19:45] Completed 197500 out of 250000 steps (79%)
[12:23:04] - Autosending finished units...
[12:23:04] Trying to send all finished work units
[12:23:04] + No unsent completed units remaining.
[12:23:04] - Autosend completed
[12:29:21] Writing local files
[12:29:21] Completed 200000 out of 250000 steps (80%)
[12:38:57] Writing local files
[12:38:57] Completed 202500 out of 250000 steps (81%)
[12:48:33] Writing local files
[12:48:33] Completed 205000 out of 250000 steps (82%)
[12:58:08] Writing local files
[12:58:08] Completed 207500 out of 250000 steps (83%)
[13:07:44] Writing local files
[13:07:44] Completed 210000 out of 250000 steps (84%)
[13:17:20] Writing local files
[13:17:20] Completed 212500 out of 250000 steps (85%)
[13:26:55] Writing local files
[13:26:55] Completed 215000 out of 250000 steps (86%)
[13:36:30] Writing local files
[13:36:30] Completed 217500 out of 250000 steps (87%)
[13:46:04] Writing local files
[13:46:04] Completed 220000 out of 250000 steps (88%)
[13:55:40] Writing local files
[13:55:40] Completed 222500 out of 250000 steps (89%)
[14:05:16] Writing local files
[14:05:16] Completed 225000 out of 250000 steps (90%)
[14:14:51] Writing local files
[14:14:51] Completed 227500 out of 250000 steps (91%)
[14:24:26] Writing local files
[14:24:26] Completed 230000 out of 250000 steps (92%)
[14:34:02] Writing local files
[14:34:02] Completed 232500 out of 250000 steps (93%)
[14:43:37] Writing local files
[14:43:37] Completed 235000 out of 250000 steps (94%)
[14:53:13] Writing local files
[14:53:13] Completed 237500 out of 250000 steps (95%)
[15:02:48] Writing local files
[15:02:48] Completed 240000 out of 250000 steps (96%)
[15:12:23] Writing local files
[15:12:23] Completed 242500 out of 250000 steps (97%)
[15:21:57] Writing local files
[15:21:57] Completed 245000 out of 250000 steps (98%)
[15:31:32] Writing local files
[15:31:32] Completed 247500 out of 250000 steps (99%)
[15:41:07] Writing local files
[15:41:07] Completed 250000 out of 250000 steps (100%)
[15:41:07] Writing final coordinates.
[15:41:07] Past main M.D. loop
[15:42:07]
[15:42:07] Finished Work Unit:
[15:42:07] - Reading up to 293448 from "work/wudata_06.arc": Read 293448
[15:42:07] - Reading up to 261124 from "work/wudata_06.xtc": Read 261124
[15:42:07] goefile size: 0
[15:42:07] logfile size: 16028
[15:42:07] Leaving Run
[15:42:11] - Writing 576508 bytes of core data to disk...
[15:42:11] Done: 575996 -> 559852 (compressed to 97.1 percent)
[15:42:11] ... Done.
[15:42:12] - Shutting down core
[15:42:12]
[15:42:12] Folding@home Core Shutdown: FINISHED_UNIT
[15:42:12] CoreStatus = 64 (100)
[15:42:12] Unit 6 finished with 97 percent of time to deadline remaining.
[15:42:12] Updated performance fraction: 0.957658
[15:42:12] Sending work to server
[15:42:12] + Attempting to send results
[15:42:12] - Reading file work/wuresults_06.dat from core
[15:42:12] (Read 560364 bytes from disk)
[15:42:12] Connecting to http://171.67.108.33:8080/
[15:42:22] Posted data.
[15:42:22] Initial: 0000; - Uploaded at ~54 kB/s
[15:42:22] - Averaged speed for that direction ~67 kB/s
[15:42:22] + Results successfully sent
[15:42:22] Thank you for your contribution to Folding@Home.
[15:42:22] + Number of Units Completed: 280
[15:42:22] Trying to send all finished work units
[15:42:22] + No unsent completed units remaining.
[15:42:22] - Preparing to get new work unit...
[15:42:22] + Attempting to get work packet
[15:42:22] - Will indicate memory of 1000 MB
[15:42:22] - Connecting to assignment server
[15:42:22] Connecting to http://assign.stanford.edu:8080/
[15:42:23] Posted data.
[15:42:23] Initial: 43AB; - Successful: assigned to (171.67.108.33).
[15:42:23] + News From Folding@Home: Welcome to Folding@Home
[15:42:23] Loaded queue successfully.
[15:42:23] Connecting to http://171.67.108.33:8080/
[15:42:24] Posted data.
[15:42:24] Initial: 0000; - Receiving payload (expected size: 376131)
[15:42:26] - Downloaded at ~183 kB/s
[15:42:26] - Averaged speed for that direction ~197 kB/s
[15:42:26] + Received work.
[15:42:26] Trying to send all finished work units
[15:42:26] + No unsent completed units remaining.
[15:42:26] + Closed connections
[15:42:26]
[15:42:26] + Processing work unit
[15:42:26] Core required: FahCore_78.exe
[15:42:26] Core found.
[15:42:26] Working on Unit 07 [May 18 15:42:26]
[15:42:26] + Working ...
[15:42:26] - Calling './FahCore_78.exe -dir work/ -suffix 07 -checkpoint 15 -verbose -lifeline 2024 -version 602'
[15:42:26]
[15:42:26] *------------------------------*
[15:42:26] Folding@Home Gromacs Core
[15:42:26] Version 1.90 (March 8, 2006)
[15:42:26]
[15:42:26] Preparing to commence simulation
[15:42:26] - Looking at optimizations...
[15:42:26] - Created dyn
[15:42:26] - Files status OK
[15:42:26] - Expanded 375619 -> 1806864 (decompressed 481.0 percent)
[15:42:26] - Starting from initial work packet
[15:42:26]
[15:42:26] Project: 6887 (Run 638, Clone 15, Gen 122)
[15:42:26]
[15:42:26] Assembly optimizations on if available.
[15:42:26] Entering M.D.
[15:42:32] Protein: 2 PEPTIDE (1-42)
[15:42:32]
[15:42:32] Writing local files
[15:42:41] Extra SSE boost OK.
[15:42:41] Writing local files
[15:42:41] Completed 0 out of 250000 steps (0%)
[15:52:17] Writing local files
[15:52:17] Completed 2500 out of 250000 steps (1%)
[16:01:53] Writing local files
[16:01:53] Completed 5000 out of 250000 steps (2%)
...
[07:44:55] Writing local files
[07:44:55] Completed 250000 out of 250000 steps (100%)
[07:44:55] Writing final coordinates.
[07:44:55] Past main M.D. loop
[07:45:55]
[07:45:55] Finished Work Unit:
[07:45:55] - Reading up to 293376 from "work/wudata_07.arc": Read 293376
[07:45:55] - Reading up to 261024 from "work/wudata_07.xtc": Read 261024
[07:45:55] goefile size: 0
[07:45:55] logfile size: 16019
[07:45:55] Leaving Run
[07:46:00] - Writing 576327 bytes of core data to disk...
[07:46:01] Done: 575815 -> 561060 (compressed to 97.4 percent)
[07:46:01] ... Done.
[07:46:01] - Shutting down core
[07:46:01]
[07:46:01] Folding@home Core Shutdown: FINISHED_UNIT
[07:46:01] CoreStatus = 64 (100)
[07:46:01] Unit 7 finished with 97 percent of time to deadline remaining.
[07:46:01] Updated performance fraction: 0.959753
[07:46:01] Sending work to server
[07:46:01] + Attempting to send results
[07:46:01] - Reading file work/wuresults_07.dat from core
[07:46:01] (Read 561572 bytes from disk)
[07:46:01] Connecting to http://171.67.108.33:8080/
[07:46:08] Posted data.
[07:46:08] Initial: 0000; - Uploaded at ~78 kB/s
[07:46:08] - Averaged speed for that direction ~69 kB/s
[07:46:08] + Results successfully sent
[07:46:08] Thank you for your contribution to Folding@Home.
[07:46:08] + Number of Units Completed: 281
[07:46:08] Trying to send all finished work units
[07:46:08] + No unsent completed units remaining.
[07:46:08] - Preparing to get new work unit...
[07:46:08] + Attempting to get work packet
[07:46:08] - Will indicate memory of 1000 MB
[07:46:08] - Connecting to assignment server
[07:46:08] Connecting to http://assign.stanford.edu:8080/
[07:46:09] Posted data.
[07:46:09] Initial: 43AB; - Successful: assigned to (171.67.108.33).
[07:46:09] + News From Folding@Home: Welcome to Folding@Home
[07:46:10] Loaded queue successfully.
[07:46:10] Connecting to http://171.67.108.33:8080/
[07:46:12] Posted data.
[07:46:12] Initial: 0000; - Receiving payload (expected size: 376372)
[07:46:13] - Downloaded at ~367 kB/s
[07:46:13] - Averaged speed for that direction ~231 kB/s
[07:46:13] + Received work.
[07:46:13] Trying to send all finished work units
[07:46:13] + No unsent completed units remaining.
[07:46:13] + Closed connections
[07:46:13]
[07:46:13] + Processing work unit
[07:46:13] Core required: FahCore_78.exe
[07:46:13] Core found.
[07:46:13] Working on Unit 08 [May 19 07:46:13]
[07:46:13] + Working ...
[07:46:13] - Calling './FahCore_78.exe -dir work/ -suffix 08 -checkpoint 15 -verbose -lifeline 2024 -version 602'
[07:46:13]
[07:46:13] *------------------------------*
[07:46:13] Folding@Home Gromacs Core
[07:46:13] Version 1.90 (March 8, 2006)
[07:46:13]
[07:46:13] Preparing to commence simulation
[07:46:13] - Looking at optimizations...
[07:46:13] - Created dyn
[07:46:13] - Files status OK
[07:46:14] - Expanded 375860 -> 1806864 (decompressed 480.7 percent)
[07:46:14] - Starting from initial work packet
[07:46:14]
[07:46:14] Project: 6887 (Run 638, Clone 15, Gen 123)
[07:46:14]
[07:46:14] Assembly optimizations on if available.
[07:46:14] Entering M.D.
[07:46:20] Protein: 2 PEPTIDE (1-42)
[07:46:20]
[07:46:20] Writing local files
[07:46:28] Extra SSE boost OK.
[07:46:29] Writing local files
[07:46:29] Completed 0 out of 250000 steps (0%)
[07:56:06] Writing local files
[07:56:06] Completed 2500 out of 250000 steps (1%)
[08:05:42] Writing local files
[08:05:42] Completed 5000 out of 250000 steps (2%)
[08:15:18] Writing local files
[08:15:18] Completed 7500 out of 250000 steps (3%)
[08:24:54] Writing local files
...
[14:20:41] Completed 102500 out of 250000 steps (41%)
[14:30:18] Writing local files
[14:30:18] Completed 105000 out of 250000 steps (42%)
[14:39:54] Writing local files
[14:39:54] Completed 107500 out of 250000 steps (43%)
Lex.