Log as follows:
Code: Select all
[18:08:12] - Preparing to get new work unit...
[18:08:12] Cleaning up work directory
[18:08:12] + Attempting to get work packet
[18:08:12] Passkey found
[18:08:12] - Will indicate memory of 1024 MB
[18:08:12] - Connecting to assignment server
[18:08:12] Connecting to http://assign.stanford.edu:8080/
[18:08:15] Posted data.
[18:08:15] Initial: ED82; - Successful: assigned to (130.237.232.140).
[18:08:15] + News From Folding@Home: Welcome to Folding@Home
[18:08:16] Loaded queue successfully.
[18:08:16] Sent data
[18:08:16] Connecting to http://130.237.232.140:8080/
[18:08:18] Posted data.
[18:08:18] Initial: 0000; - Receiving payload (expected size: 1797197)
[18:18:22] - Downloaded at ~2 kB/s
[18:18:22] - Averaged speed for that direction ~3 kB/s
[18:18:22] + Received work.
[18:18:22] Trying to send all finished work units
[18:18:22] + No unsent completed units remaining.
[18:18:22] + Connections closed: You may now disconnect
[18:18:22]
[18:18:22] + Processing work unit
[18:18:22] Core required: FahCore_a3.exe
[18:18:22] Core found.
[18:18:22] Working on queue slot 06 [March 28 18:18:22 UTC]
[18:18:22] + Working ...
[18:18:22] - Calling './FahCore_a3.exe -dir work/ -nice 19 -suffix 06 -np 2 -checkpoint 15 -verbose -lifeline 6642 -version 629'
[18:18:22]
[18:18:22] *------------------------------*
[18:18:22] Folding@Home Gromacs SMP Core
[18:18:22] Version 2.17 (Mar 7 2010)
[18:18:22]
[18:18:22] Preparing to commence simulation
[18:18:22] - Looking at optimizations...
[18:18:22] - Created dyn
[18:18:22] - Files status OK
[18:18:22] - Expanded 1796685 -> 2078149 (decompressed 115.6 percent)
[18:18:22] Called DecompressByteArray: compressed_data_size=1796685 data_size=2078149, decompressed_data_size=2078149 diff=0
[18:18:22] - Digital signature verified
[18:18:22]
[18:18:22] Project: 6012 (Run 0, Clone 145, Gen 118)
[18:18:22]
[18:18:22] Assembly optimizations on if available.
[18:18:22] Entering M.D.
Starting 2 threads
NNODES=2, MYRANK=0, HOSTNAME=thread #0
NNODES=2, MYRANK=1, HOSTNAME=thread #1
Reading file work/wudata_06.tpr, VERSION 4.0.99_development_20090605 (single precision)
Note: tpx file_version 68, software version 70
Making 1D domain decomposition 2 x 1 x 1
starting mdrun 'Protein in POPC'
59500004 steps, 119000.0 ps (continuing from step 59000004, 118000.0 ps).
[18:18:29] Completed 0 out of 500000 steps (0%)
-------------------------------------------------------
Program mdrun, VERSION 4.0.99-dev-20100305
Source code file: /Users/kasson/a3_devnew/gromacs/src/mdlib/pme.c, line: 563
Fatal error:
3 particles communicated to PME node 0 are more than a cell length out of the domain decomposition cell of their charge group in dimension x
For more information and tips for trouble shooting please check the GROMACS website at
http://www.gromacs.org/Documentation/Errors
-------------------------------------------------------
Thanx for Using GROMACS - Have a Nice Day
[18:35:35] mdrun returned 255
[18:35:35] Going to send back what have done -- stepsTotalG=500000
[18:35:35] Work fraction=0.0071 steps=500000.
[18:35:39] logfile size=12499 infoLength=12499 edr=0 trr=25
[18:35:39] logfile size: 12499 info=12499 bed=0 hdr=25
[18:35:39] - Writing 13037 bytes of core data to disk...
[18:35:39] ... Done.
[18:35:40]
[18:35:40] Folding@home Core Shutdown: UNSTABLE_MACHINE
[18:35:40] CoreStatus = 7A (122)
[18:35:40] Sending work to server
[18:35:40] Project: 6012 (Run 0, Clone 145, Gen 118)
[18:35:40] + Attempting to send results [March 28 18:35:40 UTC]
[18:35:40] - Reading file work/wuresults_06.dat from core
[18:35:40] (Read 13037 bytes from disk)
[18:35:41] > Press "c" to connect to the server to upload results
c[19:14:48] - Establishing connection
[19:14:51] Connecting to http://130.237.232.140:8080/
[19:14:56] Posted data.
[19:14:57] Initial: 0000; - Uploaded at ~2 kB/s
[19:14:57] - Averaged speed for that direction ~2 kB/s
[19:14:57] + Results successfully sent
This problem is going to start raising Cain with my a3core bonus situation, I fear.