Project: 2665 (Run 0, Clone 349, Gen 189)

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pvh
Posts: 13
Joined: Wed Jul 16, 2008 4:06 pm

Project: 2665 (Run 0, Clone 349, Gen 189)

Post by pvh »

Code: Select all

[04:42:21] *------------------------------*
[04:42:21] Folding@Home Gromacs SMP Core
[04:42:21] Version 1.74 (November 27, 2006)
[04:42:21] 
[04:42:21] Preparing to commence simulation
[04:42:21] - Ensuring status. Please wait.
[04:42:21] Created dyn
[04:42:21] - Files status OK
[04:42:21]  this execution.
[04:42:21] - Previous termination of core was improper.
[04:42:21] - Files status OK
[04:42:22] - Expanded 4730941 -> 24426905 (decompressed 516.3 percent)
[04:42:23] Assembly optimizations on if available.
[04:42:23] Entering M.D.
[04:42:23] n 0, Clone 349, Gen 189)
[04:42:23] 
[04:42:23] Entering M.D.
[04:42:40] cket
[04:42:40] 
[04:42:40] Project: 2665 (Run 0, Clone 349, Gen 189)
[04:42:40] 
[04:42:40] Entering M.D.
[04:42:47] Protein: HGG in water
[04:42:47] Writing local files
[04:42:48] Extra SSE boost OK.
[04:42:49] 000 steps  (0 percent)
[04:57:51] Timered checkpoint triggered.
[05:09:36] Writing local files
[05:09:37] Completed 2500 out of 250000 steps  (1 percent)
[05:24:37] Timered checkpoint triggered.
[05:35:29] Writing local files
[05:35:30] Completed 5000 out of 250000 steps  (2 percent)
[05:50:30] Timered checkpoint triggered.
[05:58:39] Writing local files
[05:58:39] Completed 7500 out of 250000 steps  (3 percent)
[06:04:01] - Autosending finished units...
[06:04:01] Trying to send all finished work units
[06:04:01] + No unsent completed units remaining.
[06:04:01] - Autosend completed
[06:13:40] Timered checkpoint triggered.
[06:21:43] Writing local files
[06:21:43] Completed 10000 out of 250000 steps  (4 percent)
[06:36:45] Timered checkpoint triggered.
[06:45:05] Writing local files
[06:45:05] Completed 12500 out of 250000 steps  (5 percent)
[07:00:06] Timered checkpoint triggered.
[07:08:35] Writing local files
[07:08:35] Completed 15000 out of 250000 steps  (6 percent)
[07:23:36] Timered checkpoint triggered.
[07:31:47] Writing local files
[07:31:47] Completed 17500 out of 250000 steps  (7 percent)
[07:46:48] Timered checkpoint triggered.
[07:55:49] Writing local files
[07:55:50] Completed 20000 out of 250000 steps  (8 percent)
[08:10:50] Timered checkpoint triggered.
[08:19:02] Writing local files
[08:19:02] Completed 22500 out of 250000 steps  (9 percent)
[08:34:02] Timered checkpoint triggered.
[08:42:06] Writing local files
[08:42:06] Completed 25000 out of 250000 steps  (10 percent)
[08:57:05] Timered checkpoint triggered.
[09:05:18] Writing local files
[09:05:18] Completed 27500 out of 250000 steps  (11 percent)
[09:20:18] Timered checkpoint triggered.
[09:28:43] Writing local files
[09:28:43] Completed 30000 out of 250000 steps  (12 percent)
[09:43:43] Timered checkpoint triggered.
[09:52:05] Writing local files
[09:52:05] Completed 32500 out of 250000 steps  (13 percent)
[10:07:05] Timered checkpoint triggered.
[10:15:26] Writing local files
[10:15:26] Completed 35000 out of 250000 steps  (14 percent)
[10:30:26] Timered checkpoint triggered.
[10:39:00] Writing local files
[10:39:00] Completed 37500 out of 250000 steps  (15 percent)
[10:54:01] Timered checkpoint triggered.
[11:02:32] Writing local files
[11:02:32] Completed 40000 out of 250000 steps  (16 percent)
[11:17:32] Timered checkpoint triggered.
[11:25:55] Writing local files
[11:25:55] Completed 42500 out of 250000 steps  (17 percent)
[11:40:55] Timered checkpoint triggered.
[11:49:33] Writing local files
[11:49:33] Completed 45000 out of 250000 steps  (18 percent)
[12:04:01] - Autosending finished units...
[12:04:01] Trying to send all finished work units
[12:04:01] + No unsent completed units remaining.
[12:04:01] - Autosend completed
[12:04:33] Timered checkpoint triggered.
[12:12:51] Writing local files
[12:12:51] Completed 47500 out of 250000 steps  (19 percent)
[12:27:52] Timered checkpoint triggered.
[12:36:52] Writing local files
[12:36:53] Completed 50000 out of 250000 steps  (20 percent)
[12:51:52] Timered checkpoint triggered.
[13:00:31] Writing local files
[13:00:31] Completed 52500 out of 250000 steps  (21 percent)
[13:15:31] Timered checkpoint triggered.
[13:24:17] Writing local files
[13:24:18] Completed 55000 out of 250000 steps  (22 percent)
[13:39:17] Timered checkpoint triggered.
[13:48:22] Writing local files
[13:48:22] Completed 57500 out of 250000 steps  (23 percent)
[14:03:22] Timered checkpoint triggered.
[14:12:32] Writing local files
[14:12:33] Completed 60000 out of 250000 steps  (24 percent)
[14:27:32] Timered checkpoint triggered.
[14:36:17] Writing local files
[14:36:17] Completed 62500 out of 250000 steps  (25 percent)
[14:51:17] Timered checkpoint triggered.
[15:00:12] Writing local files
[15:00:12] Completed 65000 out of 250000 steps  (26 percent)
[15:15:12] Timered checkpoint triggered.
[15:23:49] Writing local files
[15:23:49] Completed 67500 out of 250000 steps  (27 percent)
[15:38:49] Timered checkpoint triggered.
[15:47:38] Writing local files
[15:47:38] Completed 70000 out of 250000 steps  (28 percent)
[16:02:38] Timered checkpoint triggered.
[16:11:20] Writing local files
[16:11:20] Completed 72500 out of 250000 steps  (29 percent)
[16:26:20] Timered checkpoint triggered.
[16:34:44] Writing local files
[16:34:44] Completed 75000 out of 250000 steps  (30 percent)
[16:49:44] Timered checkpoint triggered.
[16:58:34] Writing local files
[16:58:34] Completed 77500 out of 250000 steps  (31 percent)
[17:13:34] Timered checkpoint triggered.
[17:21:50] Writing local files
[17:21:50] Completed 80000 out of 250000 steps  (32 percent)
[17:36:50] Timered checkpoint triggered.
[17:44:48] Writing local files
[17:44:49] Completed 82500 out of 250000 steps  (33 percent)
[17:59:48] Timered checkpoint triggered.
[18:04:01] - Autosending finished units...
[18:04:01] Trying to send all finished work units
[18:04:01] + No unsent completed units remaining.
[18:04:01] - Autosend completed
[18:07:50] Writing local files
[18:07:50] Completed 85000 out of 250000 steps  (34 percent)
[18:22:49] Timered checkpoint triggered.
[18:31:22] Writing local files
[18:31:22] Completed 87500 out of 250000 steps  (35 percent)
[18:46:23] Timered checkpoint triggered.
[18:55:28] Writing local files
[18:55:29] Completed 90000 out of 250000 steps  (36 percent)
[19:10:28] Timered checkpoint triggered.
[19:19:17] Writing local files
[19:19:17] Completed 92500 out of 250000 steps  (37 percent)
[19:34:18] Timered checkpoint triggered.
[19:42:54] Writing local files
[19:42:55] Completed 95000 out of 250000 steps  (38 percent)
[19:57:54] Timered checkpoint triggered.
[20:06:06] Writing local files
[20:06:06] Completed 97500 out of 250000 steps  (39 percent)
[20:21:06] Timered checkpoint triggered.
[20:29:21] Writing local files
[20:29:21] Completed 100000 out of 250000 steps  (40 percent)
[20:44:21] Timered checkpoint triggered.
[20:53:43] Writing local files
[20:53:43] Completed 102500 out of 250000 steps  (41 percent)
[21:08:43] Timered checkpoint triggered.
[21:17:07] Writing local files
[21:17:07] Completed 105000 out of 250000 steps  (42 percent)
[21:32:07] Timered checkpoint triggered.
[21:41:03] Writing local files
[21:41:03] Completed 107500 out of 250000 steps  (43 percent)
[21:56:02] Timered checkpoint triggered.
[22:05:08] Writing local files
[22:05:09] Completed 110000 out of 250000 steps  (44 percent)
[22:20:09] Timered checkpoint triggered.
[22:28:47] Writing local files
[22:28:47] Completed 112500 out of 250000 steps  (45 percent)
[22:43:47] Timered checkpoint triggered.
[22:52:24] Writing local files
[22:52:24] Completed 115000 out of 250000 steps  (46 percent)


--- Opening Log file [February 4 23:18:01] 


# SMP Client ##################################################################
###############################################################################

                       Folding@Home Client Version 6.02

                          http://folding.stanford.edu

###############################################################################
###############################################################################

Launch directory: /project/pvh/fold-smp
Executable: ./fah6
Arguments: -smp -advmethods -verbosity 9 

[23:18:01] - Ask before connecting: No
[23:18:01] - User name: pvh (Team 0)
[23:18:01] - User ID: 6BC9309E74AAC69D
[23:18:01] - Machine ID: 1
[23:18:01] 
[23:18:02] Loaded queue successfully.
[23:18:02] - Autosending finished units...
[23:18:02] 
[23:18:02] Trying to send all finished work units
[23:18:02] + Processing work unit
[23:18:02] + No unsent completed units remaining.
[23:18:02] Core required: FahCore_a1.exe
[23:18:02] - Autosend completed
[23:18:02] Core found.
[23:18:02] Working on Unit 02 [February 4 23:18:02]
[23:18:02] + Working ...
[23:18:02] - Calling './mpiexec -np 4 -host 127.0.0.1 ./FahCore_a1.exe -dir work/ -suffix 02 -checkpoint 15 -verbose -lifeline 4284 -version 602'

[23:18:02] 
[23:18:02] *------------------------------*
[23:18:02] Folding@Home Gromacs SMP Core
[23:18:02] Version 1.74 (November 27, 2006)
[23:18:02] 
[23:18:02] Preparing to commence simulation
[23:18:02] - Ensuring status. Please wait.
[23:18:19] - Looking at optimizations...
[23:18:19] - Working with standard loops on this execution.
[23:18:19] - Previous termination of core was improper.
[23:18:19] - Going to use standard loops.
[23:18:19] - Files status OK
[23:18:21] - Expanded 4730941 -> 24426905 (decompressed 516.3 percent)
[23:18:23] 
[23:18:23] Project: 2665 (Run 0, Clone 349, Gen 189)
[23:18:23] 
[23:18:23] Entering M.D.
[23:18:29] Calling FAH init
[23:18:30] Read topology
[23:18:30] ocal files
[23:18:30] rom checkpoint)
[23:18:30] Read checkpoint
[23:18:30] Protein: HGG in water
[23:18:30] Writing local files
[23:18:31] Completed 115000 out of 250000 steps  (46 percent)
[23:18:32] Extra SSE boost OK.
[23:33:34] Timered checkpoint triggered.
[23:44:01] Writing local files
[23:44:01] Completed 117500 out of 250000 steps  (47 percent)
[23:59:02] Timered checkpoint triggered.
[00:08:41] Writing local files
[00:08:41] Completed 120000 out of 250000 steps  (48 percent)
[00:23:42] Timered checkpoint triggered.
[00:31:36] Writing local files
[00:31:36] Completed 122500 out of 250000 steps  (49 percent)
[00:46:37] Timered checkpoint triggered.
[00:55:00] Writing local files
[00:55:00] Completed 125000 out of 250000 steps  (50 percent)
[01:10:01] Timered checkpoint triggered.
[01:18:34] Writing local files
[01:18:35] Completed 127500 out of 250000 steps  (51 percent)
[01:33:35] Timered checkpoint triggered.
[01:42:09] Writing local files
[01:42:09] Completed 130000 out of 250000 steps  (52 percent)
[01:57:10] Timered checkpoint triggered.
[02:05:56] Writing local files
[02:05:57] Completed 132500 out of 250000 steps  (53 percent)
[02:20:57] Timered checkpoint triggered.
[02:28:56] Writing local files
[02:28:57] Completed 135000 out of 250000 steps  (54 percent)
[02:43:57] Timered checkpoint triggered.
[02:52:01] Writing local files
[02:52:01] Completed 137500 out of 250000 steps  (55 percent)
[03:07:01] Timered checkpoint triggered.
[03:15:12] Writing local files
[03:15:12] Completed 140000 out of 250000 steps  (56 percent)
[03:30:12] Timered checkpoint triggered.
[03:38:11] Writing local files
[03:38:11] Completed 142500 out of 250000 steps  (57 percent)
[03:53:12] Timered checkpoint triggered.
[04:01:37] Writing local files
[04:01:37] Completed 145000 out of 250000 steps  (58 percent)
[04:16:38] Timered checkpoint triggered.
[04:24:20] Writing local files
[04:24:20] Completed 147500 out of 250000 steps  (59 percent)
[04:39:21] Timered checkpoint triggered.
[04:47:12] Writing local files
[04:47:12] Completed 150000 out of 250000 steps  (60 percent)
[05:02:14] Timered checkpoint triggered.
[05:12:01] Writing local files
[05:12:01] Completed 152500 out of 250000 steps  (61 percent)
[05:18:02] - Autosending finished units...
[05:18:02] Trying to send all finished work units
[05:18:02] + No unsent completed units remaining.
[05:18:02] - Autosend completed
[05:27:02] Timered checkpoint triggered.
[05:35:39] Writing local files
[05:35:39] Completed 155000 out of 250000 steps  (62 percent)
[05:50:41] Timered checkpoint triggered.
[05:59:10] Writing local files
[05:59:11] Completed 157500 out of 250000 steps  (63 percent)
[06:14:11] Timered checkpoint triggered.
[06:22:32] Writing local files
[06:22:32] Completed 160000 out of 250000 steps  (64 percent)
[06:37:34] Timered checkpoint triggered.
[06:46:10] Writing local files
[06:46:10] Completed 162500 out of 250000 steps  (65 percent)
[07:01:11] Timered checkpoint triggered.
[07:09:39] Writing local files
[07:09:40] Completed 165000 out of 250000 steps  (66 percent)
[07:24:40] Timered checkpoint triggered.
[07:32:35] Writing local files
[07:32:36] Completed 167500 out of 250000 steps  (67 percent)
[07:47:37] Timered checkpoint triggered.
[07:55:34] Writing local files
[07:55:34] Completed 170000 out of 250000 steps  (68 percent)
[08:10:35] Timered checkpoint triggered.
[08:18:22] Writing local files
[08:18:22] Completed 172500 out of 250000 steps  (69 percent)
[08:33:23] Timered checkpoint triggered.
[08:41:55] Writing local files
[08:41:55] Completed 175000 out of 250000 steps  (70 percent)
[08:56:57] Timered checkpoint triggered.
[09:05:53] Writing local files
[09:05:53] Completed 177500 out of 250000 steps  (71 percent)
[09:20:54] Timered checkpoint triggered.
[09:29:16] Writing local files
[09:29:16] Completed 180000 out of 250000 steps  (72 percent)
[09:44:17] Timered checkpoint triggered.
[09:52:32] Writing local files
[09:52:32] Completed 182500 out of 250000 steps  (73 percent)
[10:07:33] Timered checkpoint triggered.
[10:16:06] Writing local files
[10:16:07] Completed 185000 out of 250000 steps  (74 percent)
[10:31:08] Timered checkpoint triggered.
[10:39:54] Writing local files
[10:39:54] Completed 187500 out of 250000 steps  (75 percent)
[10:54:54] Timered checkpoint triggered.
[11:03:11] Writing local files
[11:03:11] Completed 190000 out of 250000 steps  (76 percent)
[11:18:02] - Autosending finished units...
[11:18:02] Trying to send all finished work units
[11:18:02] + No unsent completed units remaining.
[11:18:02] - Autosend completed
[11:18:12] Timered checkpoint triggered.
[11:26:29] Writing local files
[11:26:29] Completed 192500 out of 250000 steps  (77 percent)
[11:41:28] Timered checkpoint triggered.
[11:49:26] Writing local files
[11:49:26] Completed 195000 out of 250000 steps  (78 percent)
[12:04:27] Timered checkpoint triggered.
[12:12:33] Writing local files
[12:12:34] Completed 197500 out of 250000 steps  (79 percent)
[12:27:34] Timered checkpoint triggered.
[12:35:42] Writing local files
[12:35:42] Completed 200000 out of 250000 steps  (80 percent)
[12:50:43] Timered checkpoint triggered.
[12:58:42] Writing local files
[12:58:43] Completed 202500 out of 250000 steps  (81 percent)
[13:13:44] Timered checkpoint triggered.
[13:22:14] Writing local files
[13:22:14] Completed 205000 out of 250000 steps  (82 percent)
[13:37:15] Timered checkpoint triggered.
[13:44:54] Writing local files
[13:44:54] Completed 207500 out of 250000 steps  (83 percent)
[13:59:56] Timered checkpoint triggered.
[14:08:31] Writing local files
[14:08:31] Completed 210000 out of 250000 steps  (84 percent)
[14:23:32] Timered checkpoint triggered.
[14:31:41] Writing local files
[14:31:41] Completed 212500 out of 250000 steps  (85 percent)
[14:46:42] Timered checkpoint triggered.
[14:54:28] Writing local files
[14:54:29] Completed 215000 out of 250000 steps  (86 percent)
[15:09:29] Timered checkpoint triggered.
[15:17:07] Writing local files
[15:17:07] Completed 217500 out of 250000 steps  (87 percent)
[15:32:09] Timered checkpoint triggered.
[15:39:45] Writing local files
[15:39:45] Completed 220000 out of 250000 steps  (88 percent)
[15:54:46] Timered checkpoint triggered.
[16:02:43] Writing local files
[16:02:43] Completed 222500 out of 250000 steps  (89 percent)
[16:17:44] Timered checkpoint triggered.
[16:25:26] Writing local files
[16:25:27] Completed 225000 out of 250000 steps  (90 percent)
[16:40:27] Timered checkpoint triggered.
[16:49:26] Writing local files
[16:49:26] Completed 227500 out of 250000 steps  (91 percent)
[17:04:27] Timered checkpoint triggered.
[17:13:08] Writing local files
[17:13:08] Completed 230000 out of 250000 steps  (92 percent)
[17:18:02] - Autosending finished units...
[17:18:02] Trying to send all finished work units
[17:18:02] + No unsent completed units remaining.
[17:18:02] - Autosend completed
[17:28:09] Timered checkpoint triggered.
[17:36:39] Writing local files
[17:36:39] Completed 232500 out of 250000 steps  (93 percent)
[17:51:40] Timered checkpoint triggered.
[17:59:42] Writing local files
[17:59:42] Completed 235000 out of 250000 steps  (94 percent)
[18:14:42] Timered checkpoint triggered.
[18:23:24] Writing local files
[18:23:24] Completed 237500 out of 250000 steps  (95 percent)
[18:38:25] Timered checkpoint triggered.
[18:46:15] Writing local files
[18:46:15] Completed 240000 out of 250000 steps  (96 percent)
[19:01:16] Timered checkpoint triggered.
[19:09:44] Writing local files
[19:09:44] Completed 242500 out of 250000 steps  (97 percent)
[19:24:45] Timered checkpoint triggered.
[19:33:05] Writing local files
[19:33:05] Completed 245000 out of 250000 steps  (98 percent)
[19:48:06] Timered checkpoint triggered.
[19:56:22] Writing local files
[19:56:22] Completed 247500 out of 250000 steps  (99 percent)
[20:11:23] Timered checkpoint triggered.
[20:20:18] Writing local files
[20:20:18] Completed 250000 out of 250000 steps  (100 percent)
[20:20:19] Writing final coordinates.
[20:20:20] Past main M.D. loop
[20:20:20] Will end MPI now
[20:21:20] 
[20:21:20] Finished Work Unit:
[20:21:20] - Reading up to 21310704 from "work/wudata_02.arc": Read 21310704
[20:21:20] - Reading up to 555300 from "work/wudata_02.xtc": Read 555300
[20:21:20] goefile size: 0
[20:21:20] logfile size: 206802
[20:21:20] Leaving Run
[20:21:25] - Writing 22079178 bytes of core data to disk...
[20:21:25]   ... Done.
[20:24:44] 
[20:24:44] Folding@home Core Shutdown: INTERRUPTED
[20:24:48] CoreStatus = 12 (18)
[20:24:48] Client-core communications error: ERROR 0x12
[20:24:48] Deleting current work unit & continuing...
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