Project: 2677 (Run 23, Clone 31, Gen 62) - corestatus = 66

HP&H · Post by **HP&H** » Tue Jan 12, 2010 9:45 pm

This is the log from the 3rd attempt at the same WU

# Linux SMP Console Edition ###################################################
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                       Folding@Home Client Version 6.24beta

                          http://folding.stanford.edu

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Launch directory: ~/Folding@Home
Executable: ./fah6
Arguments: -smp -advmethods -verbosity 9 

[21:27:52] - Ask before connecting: No
[21:27:52] - User name: HP&H (Team 37651)
[21:27:52] - User ID: 5C3CA25C...
[21:27:52] - Machine ID: 1
[21:27:52] 
[21:27:53] Loaded queue successfully.
[21:27:53] - Autosending finished units... [January 12 21:27:53 UTC]
[21:27:53] Trying to send all finished work units
[21:27:53] + No unsent completed units remaining.
[21:27:53] - Autosend completed
[21:27:53] 
[21:27:53] + Processing work unit
[21:27:53] At least 4 processors must be requested.Core required: FahCore_a2.exe
[21:27:53] Core found.
[21:27:53] Working on queue slot 06 [January 12 21:27:53 UTC]
[21:27:53] + Working ...
[21:27:53] - Calling './mpiexec -np 4 -host 127.0.0.1 ./FahCore_a2.exe -dir work/ -suffix 06 -checkpoint 15 -verbose -lifeline 2858 -version 624'

[21:27:53] 
[21:27:53] *------------------------------*
[21:27:53] Folding@Home Gromacs SMP Core
[21:27:53] Version 2.10 (Sun Aug 30 03:43:28 CEST 2009)
[21:27:53] 
[21:27:53] Preparing to commence simulation
[21:27:53] - Ensuring status. Please wait.
[21:27:54] Called DecompressByteArray: compressed_data_size=4839195 data_size=24029389, decompressed_data_size=24029389 diff=0
[21:27:54] - Digital signature verified
[21:27:54] 
[21:27:54] Project: 2677 (Run 23, Clone 31, Gen 62)
[21:27:54] 
[21:27:54] Assembly optimizations on if available.
[21:27:54] Entering M.D.
[21:28:04] Run 23, Clone 31, Gen 62)
[21:28:04] 
[21:28:04] Entering M.D.
[21:28:17] lding@home Core Shutdown: INTERRUPTED
[21:28:21] CoreStatus = 66 (102)
[21:28:21] + Shutdown requested by user. Exiting.***** Got a SIGTERM signal (15)
[21:28:21] Killing all core threads

Folding@Home Client Shutdown.

The logfile didn't catch all output though... this is what was on the console

Code: Select all

NOTE: The tpr file used for this simulation is in an old format, for less memory usage and possibly more performance create a new tpr file with an up to date version of grompp

Making 1D domain decomposition 1 x 1 x 4
starting mdrun '22869 system in water'
15750000 steps,  31500.0 ps (continuing from step 15500000,  31000.0 ps).

Step 15500000, time 31000 (ps)  LINCS WARNING
relative constraint deviation after LINCS:
rms 2449.734475, max 134246.343750 (between atoms 5464 and 5466)
bonds that rotated more than 90 degrees:
 atom 1 atom 2  angle  previous, current, constraint length
   5464   5465   90.2    0.1090 318.2937      0.1090
   5464   5466   90.1    0.1090 14632.9619      0.1090

t = 31000.001 ps: Water molecule starting at atom 63532 can not be settled.
Check for bad contacts and/or reduce the timestep.
[21:28:17] lding@home Core Shutdown: INTERRUPTED
application called MPI_Abort(MPI_COMM_WORLD, 102) - process 0
[0]0:Return code = 102
[0]1:Return code = 0, signaled with Quit
[0]2:Return code = 0, signaled with Segmentation fault
[0]3:Return code = 0, signaled with Quit
[21:28:21] CoreStatus = 66 (102)
[21:28:21] + Shutdown requested by user. Exiting.***** Got a SIGTERM signal (15)
[21:28:21] Killing all core threads

Folding@Home Client Shutdown.