Project: 2675 (Run 3, Clone 169, Gen 76)
Posted: Mon Apr 06, 2009 8:31 pm
Code: Select all
[20:29:26] Project: 2675 (Run 3, Clone 169, Gen 76)
[20:29:26]
[20:29:26] Entering M.D.
NNODES=4, MYRANK=0, HOSTNAME=Water-Quad-US
NNODES=4, MYRANK=1, HOSTNAME=Water-Quad-US
NNODES=4, MYRANK=3, HOSTNAME=Water-Quad-US
NNODES=4, MYRANK=2, HOSTNAME=Water-Quad-US
NODEID=0 argc=19
:-) G R O M A C S (-:
Groningen Machine for Chemical Simulation
:-) VERSION 3.3.99_development_200800503 (-:
Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2008, The GROMACS development team,
check out http://www.gromacs.org for more information.
:-) mdrun (-:
Reading file work/wudata_09.tpr, VERSION 3.3.99_development_20070618 (single precision)
NODEID=1 argc=19
NODEID=3 argc=19
NODEID=2 argc=19
Note: tpx file_version 48, software version 56
Making 1D domain decomposition 1 x 1 x 4
starting mdrun '22878 system in water'
250000 steps, 500.0 ps.
t = 38000.020 ps: Water molecule starting at atom 84613 can not be settled.
Check for bad contacts and/or reduce the timestep.
Wrote pdb files with previous and current coordinates
t = 38000.020 ps: Water molecule starting at atom 35578 can not be settled.
Check for bad contacts and/or reduce the timestep.
Wrote pdb files with previous and current coordinates
t = 38000.020 ps: Water molecule starting at atom 84613 can not be settled.
Check for bad contacts and/or reduce the timestep.
Wrote pdb files with previous and current coordinates
t = 38000.027 ps: Water molecule starting at atom 35578 can not be settled.
Check for bad contacts and/or reduce the timestep.
Wrote pdb files with previous and current coordinates
t = 38000.031 ps: Water molecule starting at atom 83368 can not be settled.
Check for bad contacts and/or reduce the timestep.
Wrote pdb files with previous and current coordinates
t = 38000.035 ps: Water molecule starting at atom 83368 can not be settled.
Check for bad contacts and/or reduce the timestep.
Wrote pdb files with previous and current coordinates
t = 38000.035 ps: Water molecule starting at atom 120505 can not be settled.
Check for bad contacts and/or reduce the timestep.
Wrote pdb files with previous and current coordinates
t = 38000.039 ps: Water molecule starting at atom 112504 can not be settled.
Check for bad contacts and/or reduce the timestep.
Wrote pdb files with previous and current coordinates
t = 38000.043 ps: Water molecule starting at atom 120505 can not be settled.
Check for bad contacts and/or reduce the timestep.
Wrote pdb files with previous and current coordinates
t = 38000.043 ps: Water molecule starting at atom 74347 can not be settled.
Check for bad contacts and/or reduce the timestep.
t = 38000.043 ps: Water molecule starting at atom 104083 can not be settled.
Check for bad contacts and/or reduce the timestep.
Wrote pdb files with previous and current coordinates
Wrote pdb files with previous and current coordinates
[0]0:Return code = 0, signaled with Segmentation fault
[0]1:Return code = 0, signaled with Quit
[0]2:Return code = 0, signaled with Quit
[0]3:Return code = 0, signaled with Segmentation fault
[20:29:44] CoreStatus = 0 (0)
[20:29:44] Sending work to server
[20:29:44] Project: 2675 (Run 3, Clone 169, Gen 76)
[20:29:44] - Error: Could not get length of results file work/wuresults_09.dat
[20:29:44] - Error: Could not read unit 09 file. Removing from queue.
[20:29:44] - Preparing to get new work unit...
[20:29:44] + Attempting to get work packet
[20:29:44] - Connecting to assignment server
[20:29:44] - Successful: assigned to (171.64.65.56).
[20:29:44] + News From Folding@Home: Welcome to Folding@Home
[20:29:44] Loaded queue successfully.