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Project: 2675 (Run 3, Clone 169, Gen 76)

Posted: Mon Apr 06, 2009 8:31 pm
by road-runner

Code: Select all

[20:29:26] Project: 2675 (Run 3, Clone 169, Gen 76)
[20:29:26] 
[20:29:26] Entering M.D.
NNODES=4, MYRANK=0, HOSTNAME=Water-Quad-US
NNODES=4, MYRANK=1, HOSTNAME=Water-Quad-US
NNODES=4, MYRANK=3, HOSTNAME=Water-Quad-US
NNODES=4, MYRANK=2, HOSTNAME=Water-Quad-US
NODEID=0 argc=19
                         :-)  G  R  O  M  A  C  S  (-:

                   Groningen Machine for Chemical Simulation

                 :-)  VERSION 3.3.99_development_200800503  (-:


      Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
       Copyright (c) 1991-2000, University of Groningen, The Netherlands.
             Copyright (c) 2001-2008, The GROMACS development team,
            check out http://www.gromacs.org for more information.


                                :-)  mdrun  (-:

Reading file work/wudata_09.tpr, VERSION 3.3.99_development_20070618 (single precision)
NODEID=1 argc=19
NODEID=3 argc=19
NODEID=2 argc=19
Note: tpx file_version 48, software version 56
Making 1D domain decomposition 1 x 1 x 4
starting mdrun '22878 system in water'
250000 steps,    500.0 ps.

t = 38000.020 ps: Water molecule starting at atom 84613 can not be settled.
Check for bad contacts and/or reduce the timestep.
Wrote pdb files with previous and current coordinates

t = 38000.020 ps: Water molecule starting at atom 35578 can not be settled.
Check for bad contacts and/or reduce the timestep.
Wrote pdb files with previous and current coordinates

t = 38000.020 ps: Water molecule starting at atom 84613 can not be settled.
Check for bad contacts and/or reduce the timestep.
Wrote pdb files with previous and current coordinates

t = 38000.027 ps: Water molecule starting at atom 35578 can not be settled.
Check for bad contacts and/or reduce the timestep.
Wrote pdb files with previous and current coordinates

t = 38000.031 ps: Water molecule starting at atom 83368 can not be settled.
Check for bad contacts and/or reduce the timestep.
Wrote pdb files with previous and current coordinates

t = 38000.035 ps: Water molecule starting at atom 83368 can not be settled.
Check for bad contacts and/or reduce the timestep.
Wrote pdb files with previous and current coordinates

t = 38000.035 ps: Water molecule starting at atom 120505 can not be settled.
Check for bad contacts and/or reduce the timestep.
Wrote pdb files with previous and current coordinates

t = 38000.039 ps: Water molecule starting at atom 112504 can not be settled.
Check for bad contacts and/or reduce the timestep.
Wrote pdb files with previous and current coordinates

t = 38000.043 ps: Water molecule starting at atom 120505 can not be settled.
Check for bad contacts and/or reduce the timestep.
Wrote pdb files with previous and current coordinates

t = 38000.043 ps: Water molecule starting at atom 74347 can not be settled.
Check for bad contacts and/or reduce the timestep.

t = 38000.043 ps: Water molecule starting at atom 104083 can not be settled.
Check for bad contacts and/or reduce the timestep.
Wrote pdb files with previous and current coordinates
Wrote pdb files with previous and current coordinates
[0]0:Return code = 0, signaled with Segmentation fault
[0]1:Return code = 0, signaled with Quit
[0]2:Return code = 0, signaled with Quit
[0]3:Return code = 0, signaled with Segmentation fault
[20:29:44] CoreStatus = 0 (0)
[20:29:44] Sending work to server
[20:29:44] Project: 2675 (Run 3, Clone 169, Gen 76)
[20:29:44] - Error: Could not get length of results file work/wuresults_09.dat
[20:29:44] - Error: Could not read unit 09 file. Removing from queue.
[20:29:44] - Preparing to get new work unit...
[20:29:44] + Attempting to get work packet
[20:29:44] - Connecting to assignment server
[20:29:44] - Successful: assigned to (171.64.65.56).
[20:29:44] + News From Folding@Home: Welcome to Folding@Home
[20:29:44] Loaded queue successfully.



Re: Project: 2675 (Run 3, Clone 169, Gen 76)

Posted: Tue Apr 07, 2009 4:24 am
by susato
Hello road-runner,

Was that failure right at the beginning of the unit, or did it happen on restart after a shutdown?
There's no info in the database on this work unit. No one has completed it for full or partial credit.
However, the preceding generation was finished on 2/20.

If you get it again, please let us know what happens the second time round. If we get more complaints about it, we'll mark it bad. Thanks.

Re: Project: 2675 (Run 3, Clone 169, Gen 76)

Posted: Tue Apr 07, 2009 4:37 am
by road-runner
It was at the beginning, I deleted the files and got it again and it done the same thing, deleted them again then the sever give me a new WU...