4433 (R37, C3, G19) impossible run time.
Posted: Sun Feb 22, 2009 2:35 pm
Thought you might be interested in the output. I gave it restart, to no avail. Machine specs and output below.
Mac Mini C2D 2.0GHz, 2 x 256MB RAM, OS 10.4.8;
Mac Mini C2D 2.0GHz, 2 x 256MB RAM, OS 10.4.8;
Code: Select all
[22:35:53] *------------------------------*
[22:35:53] Folding@Home Gromacs SMP Core
[22:35:53] Version 2.01 (Wed Jul 16 08:26:53 PDT 2008)
[22:35:53]
[22:35:53] Preparing to commence simulation
[22:35:53] - Ensuring status. Please wait.
[22:36:02] - Assembly optimizations manually forced on.
[22:36:02] - Not checking prior termination.
[22:36:03] - Expanded 229119 -> 1114469 (decompressed 486.4 percent)
[22:36:03] Called DecompressByteArray: compressed_data_size=229119 data_size=1114469, decompressed_data_size=1114469 diff=0
[22:36:03] - Digital signature verified
[22:36:03]
[22:36:03] Project: 4433 (Run 37, Clone 3, Gen 19)
[22:36:03]
[22:36:03] Assembly optimizations on if available.
[22:36:03] Entering M.D.
NNODES=4, MYRANK=1, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NNODES=4, MYRANK=2, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NNODES=4, MYRANK=0, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NNODES=4, MYRANK=3, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NODEID=0 argc=19
:-) G R O M A C S (-:
Groningen Machine for Chemical Simulation
:-) VERSION 3.3.99_development_200800503 (-:
Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2008, The GROMACS development team,
check out http://www.gromacs.org for more information.
:-) mdrun (-:
NODEID=1 argc=19
NODEID=2 argc=19
NODEID=3 argc=19
Reading file work/wudata_04.tpr, VERSION 3.3.99_development_20080208 (single precision)
Note: tpx file_version 54, software version 56
[22:36:09] Node 3 initialized
Making 1D domain decomposition 4 x 1 x 1
starting mdrun 'Protein in water'
44999996 steps, 90000.0 ps.
Writing checkpoint, step 5026800 at Sat Feb 21 16:51:10 2009
Writing checkpoint, step 5053690 at Sat Feb 21 17:06:10 2009
Writing checkpoint, step 5080570 at Sat Feb 21 17:21:10 2009
Writing checkpoint, step 5107390 at Sat Feb 21 17:36:10 2009
Writing checkpoint, step 5134060 at Sat Feb 21 17:51:10 2009
Writing checkpoint, step 5160840 at Sat Feb 21 18:06:10 2009
Writing checkpoint, step 5187590 at Sat Feb 21 18:21:10 2009
Writing checkpoint, step 5214360 at Sat Feb 21 18:36:10 2009
Writing checkpoint, step 5241100 at Sat Feb 21 18:51:10 2009
Writing checkpoint, step 5267810 at Sat Feb 21 19:06:10 2009
Writing checkpoint, step 5294530 at Sat Feb 21 19:21:10 2009
Writing checkpoint, step 5321260 at Sat Feb 21 19:36:10 2009
Writing checkpoint, step 5347910 at Sat Feb 21 19:51:10 2009
Writing checkpoint, step 5374550 at Sat Feb 21 20:06:10 2009
Writing checkpoint, step 5401190 at Sat Feb 21 20:21:10 2009
Writing checkpoint, step 5427870 at Sat Feb 21 20:36:10 2009
[02:48:37] Completed 450000 out of 44999996 steps (1%)
Writing checkpoint, step 5454530 at Sat Feb 21 20:51:10 2009
Writing checkpoint, step 5481190 at Sat Feb 21 21:06:10 2009
Writing checkpoint, step 5507830 at Sat Feb 21 21:21:10 2009
Writing checkpoint, step 5534640 at Sat Feb 21 21:36:10 2009
Writing checkpoint, step 5561560 at Sat Feb 21 21:51:10 2009
Writing checkpoint, step 5588460 at Sat Feb 21 22:06:10 2009
Writing checkpoint, step 5615360 at Sat Feb 21 22:21:10 2009
[04:33:20] - Autosending finished units... [February 22 04:33:20 UTC]
[04:33:20] Trying to send all finished work units
[04:33:20] + No unsent completed units remaining.
[04:33:20] - Autosend completed
Writing checkpoint, step 5642180 at Sat Feb 21 22:36:10 2009
Writing checkpoint, step 5669210 at Sat Feb 21 22:51:10 2009
^C[05:02:37] ***** Got an Activate signal (2)
[05:02:37] Killing all core threads
Folding@Home Client Shutdown.
Mac-mini-Core-2-Duo-2-0GHz-1:~/FAH macaholicg5$ [0]0:Return code = 102
[0]1:Return code = 0, signaled with Quit
[0]2:Return code = 0, signaled with Quit
[0]3:Return code = 0, signaled with Quit
rbosity 9ocal -smp -forceasm -ve
Using local directory for configuration
Note: Please read the license agreement (fah6 -license). Further
use of this software requires that you have read and accepted this agreement.
Using local directory for work files
2 cores detected
--- Opening Log file [February 22 05:08:37 UTC]
# Mac OS X SMP Console Edition ################################################
###############################################################################
Folding@Home Client Version 6.24beta
http://folding.stanford.edu
###############################################################################
###############################################################################
Launch directory: /Users/macaholicg5/FAH
Executable: ./fah6
Arguments: -local -smp -forceasm -verbosity 9
[05:08:37] - Ask before connecting: No
[05:08:37] - User name: Christian_Bargmann (Team 1971)
[05:08:37] - User ID: 3252A8973067851A
[05:08:37] - Machine ID: 1
[05:08:37]
[05:08:37] Loaded queue successfully.
[05:08:37]
[05:08:37] + Processing work unit
[05:08:37] At least 4 processors must be requested.Core required: FahCore_a2.exe
[05:08:37] Core found.
[05:08:37] - Autosending finished units... [February 22 05:08:37 UTC]
[05:08:37] - Using generic ./mpiexec
[05:08:37] Trying to send all finished work units
[05:08:37] + No unsent completed units remaining.
[05:08:37] - Autosend completed
[05:08:37] Working on queue slot 04 [February 22 05:08:37 UTC]
[05:08:37] + Working ...
[05:08:37] - Calling './mpiexec -np 4 -host 127.0.0.1 ./FahCore_a2.exe -dir work/ -suffix 04 -checkpoint 15 -forceasm -verbose -lifeline 4077 -version 624'
[05:08:37]
[05:08:37] *------------------------------*
[05:08:37] Folding@Home Gromacs SMP Core
[05:08:37] Version 2.01 (Wed Jul 16 08:26:53 PDT 2008)
[05:08:37]
[05:08:37] Preparing to commence simulation
[05:08:37] - Ensuring status. Please wait.
[05:08:37] Called DecompressByteArray: compressed_data_size=229119 data_size=1114469, decompressed_data_size=1114469 diff=0
[05:08:37] - Digital signature verified
[05:08:37]
[05:08:37] Project: 4433 (Run 37, Clone 3, Gen 19)
[05:08:37]
[05:08:38] Assembly optimizations on if available.
[05:08:38] Entering M.D.
[05:08:43] Will resume from checkpoint file
NNODES=4, MYRANK=0, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NNODES=4, MYRANK=2, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NNODES=4, MYRANK=3, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NNODES=4, MYRANK=1, HOSTNAME=Mac-mini-Core-2-Duo-2-0GHz-1.local
NODEID=0 argc=19
:-) G R O M A C S (-:
NODEID=2 argc=19
Groningen Machine for Chemical Simulation
:-) VERSION 3.3.99_development_200800503 (-:
Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2008, The GROMACS development team,
check out http://www.gromacs.org for more information.
:-) mdrun (-:
NODEID=1 argc=19
NODEID=3 argc=19
Reading file work/wudata_04.tpr, VERSION 3.3.99_development_20080208 (single precision)
Note: tpx file_version 54, software version 56
[05:08:53] Node 2 initialized
[05:08:53] ckpoint file
[05:08:53] Node 1 initialized
Making 1D domain decomposition 4 x 1 x 1
starting mdrun 'Protein in water'
44999996 steps, 90000.0 ps.
[05:08:54] Resuming from checkpoint
[05:08:54] fcSaveRestoreState: I/O failed dir=0, var=00649000, varsize=51132
[05:08:54] Verified work/wudata_04.log
[05:08:54] Verified work/wudata_04.trr
[05:08:54] Verified work/wudata_04.xtc
[05:08:54] Verified work/wudata_04.edr
[05:08:54] Completed 450010 out of 44999996 steps (1%)
Writing checkpoint, step 5476880 at Sat Feb 21 23:23:53 2009
Writing checkpoint, step 5503610 at Sat Feb 21 23:38:53 2009
Writing checkpoint, step 5530320 at Sat Feb 21 23:53:53 2009
Writing checkpoint, step 5556970 at Sun Feb 22 00:08:53 2009
Writing checkpoint, step 5583760 at Sun Feb 22 00:23:53 2009
Writing checkpoint, step 5610550 at Sun Feb 22 00:38:53 2009
Writing checkpoint, step 5637320 at Sun Feb 22 00:53:53 2009
Writing checkpoint, step 5664060 at Sun Feb 22 01:08:53 2009
Writing checkpoint, step 5690590 at Sun Feb 22 01:23:53 2009
Writing checkpoint, step 5717240 at Sun Feb 22 01:38:53 2009
Writing checkpoint, step 5743870 at Sun Feb 22 01:53:53 2009
Writing checkpoint, step 5770480 at Sun Feb 22 02:08:53 2009
Writing checkpoint, step 5797230 at Sun Feb 22 02:23:53 2009
Writing checkpoint, step 5823990 at Sun Feb 22 02:38:53 2009
Writing checkpoint, step 5850830 at Sun Feb 22 02:53:53 2009
Writing checkpoint, step 5877680 at Sun Feb 22 03:08:53 2009
[09:21:22] Completed 900000 out of 44999996 steps (2%)
Writing checkpoint, step 5904520 at Sun Feb 22 03:23:53 2009
Writing checkpoint, step 5931390 at Sun Feb 22 03:38:53 2009
Writing checkpoint, step 5958280 at Sun Feb 22 03:53:53 2009
Writing checkpoint, step 5985140 at Sun Feb 22 04:08:53 2009
Writing checkpoint, step 6012060 at Sun Feb 22 04:23:53 2009
Writing checkpoint, step 6038970 at Sun Feb 22 04:38:53 2009
Writing checkpoint, step 6066130 at Sun Feb 22 04:53:53 2009
[11:08:37] - Autosending finished units... [February 22 11:08:37 UTC]
[11:08:37] Trying to send all finished work units
[11:08:37] + No unsent completed units remaining.
[11:08:37] - Autosend completed
Writing checkpoint, step 6093260 at Sun Feb 22 05:08:53 2009
Writing checkpoint, step 6120540 at Sun Feb 22 05:23:53 2009
Writing checkpoint, step 6147800 at Sun Feb 22 05:38:53 2009
Writing checkpoint, step 6175200 at Sun Feb 22 05:53:53 2009
Writing checkpoint, step 6202580 at Sun Feb 22 06:08:53 2009
Writing checkpoint, step 6229770 at Sun Feb 22 06:23:53 2009
Writing checkpoint, step 6256760 at Sun Feb 22 06:38:53 2009
Writing checkpoint, step 6283910 at Sun Feb 22 06:53:53 2009
Writing checkpoint, step 6311040 at Sun Feb 22 07:08:53 2009
Writing checkpoint, step 6338250 at Sun Feb 22 07:23:53 2009
[13:30:24] Completed 1350000 out of 44999996 steps (3%)
Writing checkpoint, step 6365250 at Sun Feb 22 07:38:53 2009
Writing checkpoint, step 6392290 at Sun Feb 22 07:53:53 2009
Writing checkpoint, step 6419610 at Sun Feb 22 08:08:53 2009