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Too short expiration time or too slow performance? (Core a7)

https://foldingforum.org/viewtopic.php?t=29294

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Too short expiration time or too slow performance? (Core a7)

Posted: Wed Oct 26, 2016 7:11 pm
by ejsanyo
Since there are new Core a7 based WU's I'm constantly experiencing problems with them. In most cases the WU's are computing normally and the FAHControl says that the ETA will be in 2+ days. And by appreciating the real speed of execution it seems to be true. But the timeout set on such WU is always less than a day! And expiration time is set for one day! So my PC will never executes it on time. Yes, maybe this PC doesn't amazes you by the blast processing or something, I know. This is a little obsolete Phenom x4 3.4 GHz based machine, 16G RAM, Win 7 x64. But for God's sake could be expiration time a little bit longer? Like for Core a4 based WU's at least which have no problems with the same configuration. If not, tell me is there a way to disable the receiption of a7 based WU's? Thanks.
PS I still get such WU's even for a weaker machines. And for them the situation is even more depressing because the timeouts and expirations are the same.

Re: Too short expiration time or too slow performance? (Core

Posted: Wed Oct 26, 2016 7:26 pm
by Nathan_P
Are you letting the WU run a few percent before checking the time remaining, FAHControl will always show a very log time to completion when it first starts a WU. IF you are still stuck please post the first 100 lines or so of your log

Re: Too short expiration time or too slow performance? (Core

Posted: Wed Oct 26, 2016 8:01 pm
by ejsanyo
Nathan_P wrote:Are you letting the WU run a few percent before checking the time remaining, FAHControl will always show a very log time to completion when it first starts a WU. IF you are still stuck please post the first 100 lines or so of your log
I gave the WU's run as long as the client itself delete the WU because "the time is over".
I didn't save currently deleted WU's logs but can say the core does not freeze all of the time. For example here is a WU it's now trying to complete:

Code: Select all

16:00:13:WU00:FS01:0xa7:Completed 8000 out of 80000 steps (10%)
16:10:28:WU02:FS00:0x21:Completed 83200 out of 520000 steps (16%)
16:34:19:WU00:FS01:0xa7:Completed 8800 out of 80000 steps (11%)
17:08:24:WU00:FS01:0xa7:Completed 9600 out of 80000 steps (12%)
17:10:22:WU02:FS00:0x21:Completed 88400 out of 520000 steps (17%)
About half an hour for the percent. So it's about 50 hours before completion...about 2 days, so ETA value was correct!

Re: Too short expiration time or too slow performance? (Core

Posted: Wed Oct 26, 2016 8:52 pm
by ChristianVirtual
Here my guess: you run your CPU in max setting an PPD have also GPU running. AS indicated in your log.

Now each GPU Need one thread exclusive. CPU:6 might be a good setting. Can you please share your first 100 lines of config and system setup to confirm ?

Re: Too short expiration time or too slow performance? (Core

Posted: Wed Oct 26, 2016 8:58 pm
by bruce
If my information is correct, the Phenom x4 does not support AVX so it's probably using SSE2. Seeing portions of your log containing FAH's description of your system plus a segment showing the download and initiation of an A7 WU would help.

Being assigned WUs that you can't complete with a rather old CPU is probably an unsolvable problem. (I believe deadlines are established based on newer/faster hardware.) I see you're folding with a GPU, too, which requires a portion of your CPU power to drive it. We can provide a more accurate analysis when you've posted that information from your log.

Re: Too short expiration time or too slow performance? (Core

Posted: Thu Oct 27, 2016 6:26 am
by ejsanyo
ChristianVirtual wrote:Can you please share your first 100 lines of config and system setup to confirm ?
Well, if it would help there is my config.xml:

Code: Select all

<config>
  <!-- Folding Core -->
  <core-priority v='low'/>

  <!-- Folding Slot Configuration -->
  <extra-core-args v='-forceasm'/>

  <!-- Network -->
  <proxy v='72.162.36.14:8080'/>

  <!-- Slot Control -->
  <pause-on-battery v='false'/>
  <power v='FULL'/>

  <!-- User Information -->
  <passkey v='*************************'/>
  <team v='47191'/>
  <user v='EJSanYo'/>

  <!-- Folding Slots -->
  <slot id='0' type='GPU'/>
  <slot id='1' type='CPU'>
    <cpus v='4'/>
  </slot>
</config>
As you can see there is nothing special. Of course the Core 21 has it's own thread but according to the task manager information it uses almost no main CPU cycles (about 0...2 percent). And the Core a7 (or a4 for other WU's) eats almost 100% of CPU. Looks like everything is OK here, isn't it?
bruce wrote:If my information is correct, the Phenom x4 does not support AVX so it's probably using SSE2. Seeing portions of your log containing FAH's description of your system plus a segment showing the download and initiation of an A7 WU would help.
Right, it doesn't support AVX instruction set as well as SSE4 (so-called "SSE4a" is not an option because it's AMD specific).
Hmm, I see my client managed to get a4 WU and executing it as usual. And now I can't see older logs about a7 WU. Here is my current log sample, maybe it will help to clarify something:

Code: Select all

*********************** Log Started 2016-10-26T18:11:20Z ***********************
18:11:20:************************* Folding@home Client *************************
18:11:20:        Website: http://folding.stanford.edu/
18:11:20:      Copyright: (c) 2009-2016 Stanford University
18:11:20:         Author: Joseph Coffland <joseph@cauldrondevelopment.com>
18:11:20:           Args: --open-web-control
18:11:20:         Config: C:\ProgramData\FAHClient\config.xml
18:11:20:******************************** Build ********************************
18:11:20:        Version: 7.4.15
18:11:20:           Date: Aug 17 2016
18:11:20:           Time: 04:33:41
18:11:20:     Repository: Git
18:11:20:       Revision: 4f3e0e25571a9f691719f0c273739294bde517dd
18:11:20:         Branch: master
18:11:20:       Compiler: GNU 5.3.1 20160205
18:11:20:        Options: -std=gnu++98 -I/mingw64/include -O3 -funroll-loops -ffast-math
18:11:20:                 -mfpmath=sse -fno-unsafe-math-optimizations -msse2
18:11:20:       Platform: linux2 4.6.0-1-amd64
18:11:20:           Bits: 64
18:11:20:           Mode: Release
18:11:20:******************************* System ********************************
18:11:20:            CPU: AMD Phenom(tm) II X4 965 Processor
18:11:20:         CPU ID: AuthenticAMD Family 16 Model 4 Stepping 3
18:11:20:           CPUs: 4
18:11:20:         Memory: 16.00GiB
18:11:20:    Free Memory: 13.80GiB
18:11:20:        Threads: WINDOWS_THREADS
18:11:20:     OS Version: 6.1
18:11:20:    Has Battery: false
18:11:20:     On Battery: false
18:11:20:     UTC Offset: 3
18:11:20:            PID: 392
18:11:20:            CWD: C:\ProgramData\FAHClient
18:11:20:             OS: Windows 7 Professional Service Pack 1
18:11:20:        OS Arch: AMD64
18:11:20:           GPUs: 1
18:11:20:          GPU 0: Bus:1 Slot:0 ATI:5 Bonaire XT [Radeon HD 7790]
18:11:20:           CUDA: Not detected
18:11:20:OpenCL Device 0: Platform:0 Device:0 Bus:NA Slot:NA Compute:2.0 Driver:2117.13
18:11:20:OpenCL Device 1: Platform:0 Device:1 Bus:NA Slot:NA Compute:1.2 Driver:2117.13
18:11:20:  Win32 Service: false
18:11:20:***********************************************************************
18:11:20:<config>
18:11:20:  <!-- Folding Core -->
18:11:20:  <core-priority v='low'/>
18:11:20:
18:11:20:  <!-- Folding Slot Configuration -->
18:11:20:  <extra-core-args v='-forceasm'/>
18:11:20:
18:11:20:  <!-- Network -->
18:11:20:  <proxy v='72.162.36.14:8080'/>
18:11:20:
18:11:20:  <!-- Slot Control -->
18:11:20:  <pause-on-battery v='false'/>
18:11:20:  <power v='FULL'/>
18:11:20:
18:11:20:  <!-- User Information -->
18:11:20:  <passkey v='********************************'/>
18:11:20:  <team v='47191'/>
18:11:20:  <user v='EJSanYo'/>
18:11:20:
18:11:20:  <!-- Folding Slots -->
18:11:20:  <slot id='0' type='GPU'/>
18:11:20:  <slot id='1' type='CPU'>
18:11:20:    <cpus v='4'/>
18:11:20:  </slot>
18:11:20:</config>
18:11:20:Trying to access database...
18:11:20:Successfully acquired database lock
18:11:20:Enabled folding slot 00: READY gpu:0:Bonaire XT [Radeon HD 7790]
18:11:20:Enabled folding slot 01: READY cpu:4
18:11:20:WARNING:WU01:Missing data files, dumping
18:11:21:WU00:FS00:Starting
18:11:21:WU00:FS00:Running FahCore: "C:\Program Files (x86)\FAHClient/FAHCoreWrapper.exe" C:\ProgramData\FAHClient\cores/web.stanford.edu/~pande/Win32/AMD64/ATI/R600/Core_21.fah/FahCore_21.exe -dir 00 -suffix 01 -version 704 -lifeline 392 -checkpoint 15 -opencl-platform 0 -gpu-vendor ati -gpu 0 -forceasm
18:11:21:WU00:FS00:Started FahCore on PID 2992
18:11:21:WU00:FS00:Core PID:3184
18:11:21:WU00:FS00:FahCore 0x21 started
18:11:21:WU01:FS01:Cleaning up
18:11:21:WU00:FS00:0x21:*********************** Log Started 2016-10-26T18:11:21Z ***********************
18:11:21:WU00:FS00:0x21:Project: 9205 (Run 39, Clone 24, Gen 3)
18:11:21:WU00:FS00:0x21:Unit: 0x0000000dab436c685796c0b32f3bde5e
18:11:21:WU00:FS00:0x21:CPU: 0x00000000000000000000000000000000
18:11:21:WU00:FS00:0x21:Machine: 0
18:11:21:WU00:FS00:0x21:Digital signatures verified
18:11:21:WU00:FS00:0x21:Folding@home GPU Core21 Folding@home Core
18:11:21:WU00:FS00:0x21:Version 0.0.17
18:11:21:WU00:FS00:0x21:  Found a checkpoint file
18:11:21:WU01:FS01:Connecting to 171.67.108.45:8080
18:11:23:WU01:FS01:Assigned to work server 171.67.108.158
18:11:23:WU01:FS01:Requesting new work unit for slot 01: READY cpu:4 from 171.67.108.158
18:11:23:WU01:FS01:Connecting to 171.67.108.158:8080
18:11:26:WU01:FS01:Downloading 806.30KiB
18:11:32:WU01:FS01:Download 87.31%
18:11:32:WU01:FS01:Download complete
18:11:32:WU01:FS01:Received Unit: id:01 state:DOWNLOAD error:NO_ERROR project:9031 run:155 clone:3 gen:327 core:0xa4 unit:0x0000017aab436c9e569834f9875e247c
18:11:32:WU01:FS01:Starting
18:11:32:WU01:FS01:Running FahCore: "C:\Program Files (x86)\FAHClient/FAHCoreWrapper.exe" C:\ProgramData\FAHClient\cores/web.stanford.edu/~pande/Win32/AMD64/Core_a4.fah/FahCore_a4.exe -dir 01 -suffix 01 -version 704 -lifeline 392 -checkpoint 15 -np 4 -forceasm
18:11:32:WU01:FS01:Started FahCore on PID 3228
18:11:32:WU01:FS01:Core PID:3220
18:11:32:WU01:FS01:FahCore 0xa4 started
18:11:33:WU01:FS01:0xa4:
18:11:33:WU01:FS01:0xa4:*------------------------------*
18:11:33:WU01:FS01:0xa4:Folding@Home Gromacs GB Core
18:11:33:WU01:FS01:0xa4:Version 2.27 (Dec. 15, 2010)
18:11:33:WU01:FS01:0xa4:
18:11:33:WU01:FS01:0xa4:Preparing to commence simulation
18:11:33:WU01:FS01:0xa4:- Assembly optimizations manually forced on.
18:11:33:WU01:FS01:0xa4:- Not checking prior termination.
18:11:33:WU01:FS01:0xa4:- Expanded 825140 -> 1397768 (decompressed 169.3 percent)
18:11:33:WU01:FS01:0xa4:Called DecompressByteArray: compressed_data_size=825140 data_size=1397768, decompressed_data_size=1397768 diff=0
18:11:33:WU01:FS01:0xa4:- Digital signature verified
18:11:33:WU01:FS01:0xa4:
18:11:33:WU01:FS01:0xa4:Project: 9031 (Run 155, Clone 3, Gen 327)
18:11:33:WU01:FS01:0xa4:
18:11:33:WU01:FS01:0xa4:Assembly optimizations on if available.
18:11:33:WU01:FS01:0xa4:Entering M.D.
18:11:39:WU01:FS01:0xa4:Mapping NT from 4 to 4 
18:11:44:WU01:FS01:0xa4:Completed 0 out of 250000 steps  (0%)
18:13:14:WU00:FS00:0x21:Completed 500000 out of 2500000 steps (20%)
18:13:14:WU00:FS00:0x21:Temperature control disabled. Requirements: single Nvidia GPU, tmax must be < 110 and twait >= 900
18:16:06:WU01:FS01:0xa4:Completed 2500 out of 250000 steps  (1%)
18:19:25:WU01:FS01:0xa4:Completed 5000 out of 250000 steps  (2%)
18:21:59:WU01:FS01:0xa4:Completed 7500 out of 250000 steps  (3%)
18:24:33:WU01:FS01:0xa4:Completed 10000 out of 250000 steps  (4%)
18:27:09:WU01:FS01:0xa4:Completed 12500 out of 250000 steps  (5%)
18:29:47:WU01:FS01:0xa4:Completed 15000 out of 250000 steps  (6%)
18:32:20:WU00:FS00:0x21:Completed 525000 out of 2500000 steps (21%)
If I will take a7 WU again I will dump the logs shortly.

Re: Too short expiration time or too slow performance? (Core

Posted: Thu Oct 27, 2016 8:45 am
by foldy
16:10:28:WU02:FS00:0x21:Completed 83200 out of 520000 steps (16%)
16:34:19:WU00:FS01:0xa7:Completed 8800 out of 80000 steps (11%)
17:08:24:WU00:FS01:0xa7:Completed 9600 out of 80000 steps (12%)
17:10:22:WU02:FS00:0x21:Completed 88400 out of 520000 steps (17%)
There are 2 problems:
1) GPU takes 1 hour for 1%
2) CPU takes 0.5h for 1%

=> Try to set CPU core count to 3 for folding. Then your GPU should be fine.
Being assigned WUs that you can't complete with a rather old CPU is probably an unsolvable problem
If you can't complete a7 work units with a phenom x4 due to lacking AVX then the assignment server should exclude that hardware from assignment?

Re: Too short expiration time or too slow performance? (Core

Posted: Thu Oct 27, 2016 6:10 pm
by ejsanyo
foldy wrote: => Try to set CPU core count to 3 for folding. Then your GPU should be fine.
It seems I has no problems with Core 21 performance. Yes, the GPU WU's calculates relatively slow but they have sufficiently longer timeout. But if you think that it can be a problem I changed my settings for the CPU slot.

Oh, looks like the things getting worse! Today evening my client got the core a7 task again and...began rattling off strange exceptions. So I have to put th CPU slot on pause. There is a logs:

Code: Select all

15:19:26:WU02:FS01:0xa4:Completed 247500 out of 250000 steps  (99%)
15:19:27:WU01:FS01:Connecting to 171.67.108.45:8080
15:19:28:WU01:FS01:Assigned to work server 171.64.65.41
15:19:28:WU01:FS01:Requesting new work unit for slot 01: RUNNING cpu:4 from 171.64.65.41
15:19:28:WU01:FS01:Connecting to 171.64.65.41:8080
15:19:29:WU01:FS01:Downloading 21.15MiB
15:19:35:WU01:FS01:Download 5.91%
15:19:41:WU01:FS01:Download 13.00%
15:19:47:WU01:FS01:Download 20.39%
15:19:53:WU01:FS01:Download 27.48%
15:19:59:WU01:FS01:Download 34.28%
15:20:05:WU01:FS01:Download 41.67%
15:20:11:WU01:FS01:Download 49.06%
15:20:17:WU01:FS01:Download 56.15%
15:20:23:WU01:FS01:Download 63.54%
15:20:29:WU01:FS01:Download 70.92%
15:20:35:WU01:FS01:Download 78.02%
15:20:41:WU01:FS01:Download 85.40%
15:20:47:WU01:FS01:Download 92.50%
15:20:53:WU01:FS01:Download 99.88%
15:20:53:WU01:FS01:Download complete
15:20:53:WU01:FS01:Received Unit: id:01 state:DOWNLOAD error:NO_ERROR project:11920 run:4105 clone:0 gen:58 core:0xa7 unit:0x00000058ab40412957bfefa33d0ea78b
15:21:44:WU02:FS01:0xa4:Completed 250000 out of 250000 steps  (100%)
15:21:45:WU02:FS01:0xa4:DynamicWrapper: Finished Work Unit: sleep=10000
15:21:55:WU02:FS01:0xa4:
15:21:55:WU02:FS01:0xa4:Finished Work Unit:
15:21:55:WU02:FS01:0xa4:- Reading up to 811536 from "02/wudata_01.trr": Read 811536
15:21:55:WU02:FS01:0xa4:trr file hash check passed.
15:21:55:WU02:FS01:0xa4:- Reading up to 746032 from "02/wudata_01.xtc": Read 746032
15:21:55:WU02:FS01:0xa4:xtc file hash check passed.
15:21:55:WU02:FS01:0xa4:edr file hash check passed.
15:21:55:WU02:FS01:0xa4:logfile size: 24549
15:21:55:WU02:FS01:0xa4:Leaving Run
15:21:58:WU02:FS01:0xa4:- Writing 1584605 bytes of core data to disk...
15:21:59:WU02:FS01:0xa4:Done: 1584093 -> 1538184 (compressed to 97.1 percent)
15:21:59:WU02:FS01:0xa4:  ... Done.
15:21:59:WU02:FS01:0xa4:- Shutting down core
15:21:59:WU02:FS01:0xa4:
15:21:59:WU02:FS01:0xa4:Folding@home Core Shutdown: FINISHED_UNIT
15:21:59:WU02:FS01:FahCore returned: FINISHED_UNIT (100 = 0x64)
15:21:59:WU02:FS01:Sending unit results: id:02 state:SEND error:NO_ERROR project:9032 run:401 clone:0 gen:380 core:0xa4 unit:0x000001afab436c9e56983308467d6d04
15:21:59:WU02:FS01:Uploading 1.47MiB to 171.67.108.158
15:21:59:WU02:FS01:Connecting to 171.67.108.158:8080
15:21:59:WU01:FS01:Starting
15:21:59:WU01:FS01:Running FahCore: "C:\Program Files (x86)\FAHClient/FAHCoreWrapper.exe" C:\ProgramData\FAHClient\cores/web.stanford.edu/~pande/Win32/AMD64/Core_a7.fah/FahCore_a7.exe -dir 01 -suffix 01 -version 704 -lifeline 2580 -checkpoint 15 -np 4 -forceasm
15:21:59:WU01:FS01:Started FahCore on PID 756
15:21:59:WU01:FS01:Core PID:4668
15:21:59:WU01:FS01:FahCore 0xa7 started
15:22:00:WU01:FS01:0xa7:*********************** Log Started 2016-10-27T15:21:59Z ***********************
15:22:00:WU01:FS01:0xa7:************************** Gromacs Folding@home Core ***************************
15:22:00:WU01:FS01:0xa7:       Type: 0xa7
15:22:00:WU01:FS01:0xa7:       Core: Gromacs
15:22:00:WU01:FS01:0xa7:    Website: http://folding.stanford.edu/
15:22:00:WU01:FS01:0xa7:  Copyright: (c) 2009-2016 Stanford University
15:22:00:WU01:FS01:0xa7:     Author: Joseph Coffland <joseph@cauldrondevelopment.com>
15:22:00:WU01:FS01:0xa7:       Args: -dir 01 -suffix 01 -version 704 -lifeline 756 -checkpoint 15 -np 4
15:22:00:WU01:FS01:0xa7:             -forceasm
15:22:00:WU01:FS01:0xa7:     Config: <none>
15:22:00:WU01:FS01:0xa7:************************************ Build *************************************
15:22:00:WU01:FS01:0xa7:    Version: 0.0.11
15:22:00:WU01:FS01:0xa7:       Date: Sep 21 2016
15:22:00:WU01:FS01:0xa7:       Time: 01:53:37
15:22:00:WU01:FS01:0xa7: Repository: Git
15:22:00:WU01:FS01:0xa7:   Revision: 957bd90e68d95ddcf1594dc15ff6c64cc4555146
15:22:00:WU01:FS01:0xa7:     Branch: master
15:22:00:WU01:FS01:0xa7:   Compiler: GNU 4.2.1 Compatible Clang 3.9.0 (trunk 274080)
15:22:00:WU01:FS01:0xa7:    Options: -std=gnu++98 -O3 -funroll-loops -ffast-math -mfpmath=sse
15:22:00:WU01:FS01:0xa7:             -fno-unsafe-math-optimizations -msse2 -I/mingw64/include
15:22:00:WU01:FS01:0xa7:             -Wno-inconsistent-dllimport -Wno-parentheses-equality
15:22:00:WU01:FS01:0xa7:             -Wno-deprecated-register -Wno-unused-local-typedef
15:22:00:WU01:FS01:0xa7:   Platform: linux2 4.6.0-1-amd64
15:22:00:WU01:FS01:0xa7:       Bits: 64
15:22:00:WU01:FS01:0xa7:       Mode: Release
15:22:00:WU01:FS01:0xa7:       SIMD: sse2
15:22:00:WU01:FS01:0xa7:************************************ System ************************************
15:22:00:WU01:FS01:0xa7:        CPU: AMD Phenom(tm) II X4 965 Processor
15:22:00:WU01:FS01:0xa7:     CPU ID: AuthenticAMD Family 16 Model 4 Stepping 3
15:22:00:WU01:FS01:0xa7:       CPUs: 4
15:22:00:WU01:FS01:0xa7:     Memory: 16.00GiB
15:22:00:WU01:FS01:0xa7:Free Memory: 13.12GiB
15:22:00:WU01:FS01:0xa7:    Threads: WINDOWS_THREADS
15:22:00:WU01:FS01:0xa7: OS Version: 6.1
15:22:00:WU01:FS01:0xa7:Has Battery: false
15:22:00:WU01:FS01:0xa7: On Battery: false
15:22:00:WU01:FS01:0xa7: UTC Offset: 3
15:22:00:WU01:FS01:0xa7:        PID: 4668
15:22:00:WU01:FS01:0xa7:        CWD: C:\ProgramData\FAHClient\work
15:22:00:WU01:FS01:0xa7:         OS: Windows 7 Professional Service Pack 1
15:22:00:WU01:FS01:0xa7:    OS Arch: AMD64
15:22:00:WU01:FS01:0xa7:********************************************************************************
15:22:00:WU01:FS01:0xa7:Project: 11920 (Run 4105, Clone 0, Gen 58)
15:22:00:WU01:FS01:0xa7:Unit: 0x00000058ab40412957bfefa33d0ea78b
15:22:00:WU01:FS01:0xa7:Reading tar file core.xml
15:22:00:WU01:FS01:0xa7:Reading tar file frame58.tpr
15:22:00:WU01:FS01:0xa7:Digital signatures verified
15:22:00:WU01:FS01:0xa7:Calling: mdrun -s frame58.tpr -o frame58.trr -cpt 15 -nt 4
15:22:01:WU01:FS01:0xa7:ERROR:
15:22:01:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
15:22:01:WU01:FS01:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20160919-669094a-unknown
15:22:01:WU01:FS01:0xa7:ERROR:Source code file: /host/windows-cross-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/programs/mdrun/runner.c, line: 879
15:22:01:WU01:FS01:0xa7:ERROR:
15:22:01:WU01:FS01:0xa7:ERROR:Fatal error:
15:22:01:WU01:FS01:0xa7:ERROR:More than 1 OpenMP thread requested, but Gromacs was compiled without OpenMP support
15:22:01:WU01:FS01:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
15:22:01:WU01:FS01:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
15:22:01:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
15:22:05:WU02:FS01:Upload 17.04%
15:22:06:WU01:FS01:0xa7:ERROR:
15:22:06:WU01:FS01:0xa7:ERROR:
15:22:06:WU01:FS01:0xa7:ERROR:
15:22:06:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
15:22:06:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
15:22:06:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
15:22:06:WU01:FS01:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20160919-669094a-unknown
15:22:06:WU01:FS01:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20160919-669094a-unknown
15:22:06:WU01:FS01:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20160919-669094a-unknown
15:22:06:WU01:FS01:0xa7:ERROR:Source code file: /host/windows-cross-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/gromacs/gmxlib/gmx_omp_nthreads.c, line: 211
15:22:06:WU01:FS01:0xa7:ERROR:Source code file: /host/windows-cross-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/gromacs/gmxlib/gmx_omp_nthreads.c, line: 211
15:22:06:WU01:FS01:0xa7:ERROR:Source code file: /host/windows-cross-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/gromacs/gmxlib/gmx_omp_nthreads.c, line: 211
15:22:06:WU01:FS01:0xa7:ERROR:
15:22:06:WU01:FS01:0xa7:ERROR:
15:22:06:WU01:FS01:0xa7:ERROR:
15:22:06:WU01:FS01:0xa7:ERROR:Fatal error:
15:22:06:WU01:FS01:0xa7:ERROR:Fatal error:
15:22:06:WU01:FS01:0xa7:ERROR:Fatal error:
15:22:06:WU01:FS01:0xa7:ERROR:Environment variable OMP_NUM_THREADS (4) and the number of threads requested on the command line (1) have different values. Either omit one, or set them both to the same value.
15:22:06:WU01:FS01:0xa7:ERROR:Environment variable OMP_NUM_THREADS (4) and the number of threads requested on the command line (1) have different values. Either omit one, or set them both to the same value.
15:22:06:WU01:FS01:0xa7:ERROR:Environment variable OMP_NUM_THREADS (4) and the number of threads requested on the command line (1) have different values. Either omit one, or set them both to the same value.
15:22:06:WU01:FS01:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
15:22:06:WU01:FS01:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
15:22:06:WU01:FS01:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
15:22:06:WU01:FS01:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
15:22:06:WU01:FS01:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
15:22:06:WU01:FS01:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
15:22:06:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
15:22:06:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
15:22:06:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
15:22:11:WU01:FS01:0xa7:ERROR:
15:22:11:WU01:FS01:0xa7:WARNING:Unexpected exit() call
15:22:11:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
15:22:11:WU01:FS01:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20160919-669094a-unknown
15:22:11:WU01:FS01:0xa7:ERROR:Source code file: /host/windows-cross-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/programs/mdrun/runner.c, line: 879
15:22:11:WU01:FS01:0xa7:ERROR:
15:22:11:WU01:FS01:0xa7:ERROR:Fatal error:
15:22:11:WU01:FS01:0xa7:ERROR:More than 1 OpenMP thread requested, but Gromacs was compiled without OpenMP support
15:22:11:WU01:FS01:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
15:22:11:WU01:FS01:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
15:22:11:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
15:22:11:WU02:FS01:Upload 38.33%
15:22:17:WU02:FS01:Upload 59.63%
15:22:23:WU02:FS01:Upload 80.92%
15:22:29:WU02:FS01:Upload 97.96%
15:22:31:WU02:FS01:Upload complete
15:22:31:WU02:FS01:Server responded WORK_ACK (400)
15:22:31:WU02:FS01:Final credit estimate, 686.00 points
15:22:31:WU02:FS01:Cleaning up
15:27:47:WU00:FS00:0x21:Completed 1150000 out of 2500000 steps (46%)
15:45:48:WU00:FS00:0x21:Completed 1175000 out of 2500000 steps (47%)
16:03:54:WU00:FS00:0x21:Completed 1200000 out of 2500000 steps (48%)
16:22:31:WU00:FS00:0x21:Completed 1225000 out of 2500000 steps (49%)
16:40:38:WU00:FS00:0x21:Completed 1250000 out of 2500000 steps (50%)
16:58:50:WU00:FS00:0x21:Completed 1275000 out of 2500000 steps (51%)
17:16:52:WU00:FS00:0x21:Completed 1300000 out of 2500000 steps (52%)
17:35:29:WU00:FS00:0x21:Completed 1325000 out of 2500000 steps (53%)
17:40:42:WARNING:WU01:FS01:FahCore returned an unknown error code which probably indicates that it crashed
17:40:42:WARNING:WU01:FS01:FahCore returned: UNKNOWN_ENUM (-1073741784 = 0xc0000028)
17:40:42:WU01:FS01:Starting
17:40:42:WU01:FS01:Running FahCore: "C:\Program Files (x86)\FAHClient/FAHCoreWrapper.exe" C:\ProgramData\FAHClient\cores/web.stanford.edu/~pande/Win32/AMD64/Core_a7.fah/FahCore_a7.exe -dir 01 -suffix 01 -version 704 -lifeline 2580 -checkpoint 15 -np 4 -forceasm
17:40:42:WU01:FS01:Started FahCore on PID 684
17:40:42:WU01:FS01:Core PID:4312
17:40:42:WU01:FS01:FahCore 0xa7 started
17:40:42:WU01:FS01:0xa7:*********************** Log Started 2016-10-27T17:40:42Z ***********************
17:40:42:WU01:FS01:0xa7:************************** Gromacs Folding@home Core ***************************
17:40:42:WU01:FS01:0xa7:       Type: 0xa7
17:40:42:WU01:FS01:0xa7:       Core: Gromacs
17:40:42:WU01:FS01:0xa7:    Website: http://folding.stanford.edu/
17:40:42:WU01:FS01:0xa7:  Copyright: (c) 2009-2016 Stanford University
17:40:42:WU01:FS01:0xa7:     Author: Joseph Coffland <joseph@cauldrondevelopment.com>
17:40:42:WU01:FS01:0xa7:       Args: -dir 01 -suffix 01 -version 704 -lifeline 684 -checkpoint 15 -np 4
17:40:42:WU01:FS01:0xa7:             -forceasm
17:40:42:WU01:FS01:0xa7:     Config: <none>
17:40:42:WU01:FS01:0xa7:************************************ Build *************************************
17:40:42:WU01:FS01:0xa7:    Version: 0.0.11
17:40:42:WU01:FS01:0xa7:       Date: Sep 21 2016
17:40:42:WU01:FS01:0xa7:       Time: 01:53:37
17:40:42:WU01:FS01:0xa7: Repository: Git
17:40:42:WU01:FS01:0xa7:   Revision: 957bd90e68d95ddcf1594dc15ff6c64cc4555146
17:40:42:WU01:FS01:0xa7:     Branch: master
17:40:42:WU01:FS01:0xa7:   Compiler: GNU 4.2.1 Compatible Clang 3.9.0 (trunk 274080)
17:40:42:WU01:FS01:0xa7:    Options: -std=gnu++98 -O3 -funroll-loops -ffast-math -mfpmath=sse
17:40:42:WU01:FS01:0xa7:             -fno-unsafe-math-optimizations -msse2 -I/mingw64/include
17:40:42:WU01:FS01:0xa7:             -Wno-inconsistent-dllimport -Wno-parentheses-equality
17:40:42:WU01:FS01:0xa7:             -Wno-deprecated-register -Wno-unused-local-typedef
17:40:42:WU01:FS01:0xa7:   Platform: linux2 4.6.0-1-amd64
17:40:42:WU01:FS01:0xa7:       Bits: 64
17:40:42:WU01:FS01:0xa7:       Mode: Release
17:40:42:WU01:FS01:0xa7:       SIMD: sse2
17:40:42:WU01:FS01:0xa7:************************************ System ************************************
17:40:42:WU01:FS01:0xa7:        CPU: AMD Phenom(tm) II X4 965 Processor
17:40:42:WU01:FS01:0xa7:     CPU ID: AuthenticAMD Family 16 Model 4 Stepping 3
17:40:42:WU01:FS01:0xa7:       CPUs: 4
17:40:42:WU01:FS01:0xa7:     Memory: 16.00GiB
17:40:42:WU01:FS01:0xa7:Free Memory: 13.06GiB
17:40:42:WU01:FS01:0xa7:    Threads: WINDOWS_THREADS
17:40:42:WU01:FS01:0xa7: OS Version: 6.1
17:40:42:WU01:FS01:0xa7:Has Battery: false
17:40:42:WU01:FS01:0xa7: On Battery: false
17:40:42:WU01:FS01:0xa7: UTC Offset: 3
17:40:42:WU01:FS01:0xa7:        PID: 4312
17:40:42:WU01:FS01:0xa7:        CWD: C:\ProgramData\FAHClient\work
17:40:42:WU01:FS01:0xa7:         OS: Windows 7 Professional Service Pack 1
17:40:42:WU01:FS01:0xa7:    OS Arch: AMD64
17:40:42:WU01:FS01:0xa7:********************************************************************************
17:40:42:WU01:FS01:0xa7:Project: 11920 (Run 4105, Clone 0, Gen 58)
17:40:42:WU01:FS01:0xa7:Unit: 0x00000058ab40412957bfefa33d0ea78b
17:40:42:WU01:FS01:0xa7:Reading tar file core.xml
17:40:42:WU01:FS01:0xa7:Reading tar file frame58.tpr
17:40:42:WU01:FS01:0xa7:Digital signatures verified
17:40:42:WU01:FS01:0xa7:Calling: mdrun -s frame58.tpr -o frame58.trr -cpt 15 -nt 4
17:40:43:WU01:FS01:0xa7:ERROR:
17:40:43:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:40:43:WU01:FS01:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20160919-669094a-unknown
17:40:43:WU01:FS01:0xa7:ERROR:Source code file: /host/windows-cross-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/programs/mdrun/runner.c, line: 879
17:40:43:WU01:FS01:0xa7:ERROR:
17:40:43:WU01:FS01:0xa7:ERROR:Fatal error:
17:40:43:WU01:FS01:0xa7:ERROR:More than 1 OpenMP thread requested, but Gromacs was compiled without OpenMP support
17:40:43:WU01:FS01:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
17:40:43:WU01:FS01:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
17:40:43:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:40:48:WU01:FS01:0xa7:ERROR:
17:40:48:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:40:48:WU01:FS01:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20160919-669094a-unknown
17:40:48:WU01:FS01:0xa7:ERROR:Source code file: /host/windows-cross-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/gromacs/gmxlib/gmx_omp_nthreads.c, line: 211
17:40:48:WU01:FS01:0xa7:ERROR:
17:40:48:WU01:FS01:0xa7:ERROR:Fatal error:
17:40:48:WU01:FS01:0xa7:ERROR:Environment variable OMP_NUM_THREADS (4) and the number of threads requested on the command line (1) have different values. Either omit one, or set them both to the same value.
17:40:48:WU01:FS01:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
17:40:48:WU01:FS01:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
17:40:48:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:40:48:WU01:FS01:0xa7:ERROR:
17:40:48:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:40:48:WU01:FS01:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20160919-669094a-unknown
17:40:48:WU01:FS01:0xa7:ERROR:Source code file: /host/windows-cross-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/gromacs/gmxlib/gmx_omp_nthreads.c, line: 211
17:40:48:WU01:FS01:0xa7:ERROR:
17:40:48:WU01:FS01:0xa7:ERROR:Fatal error:
17:40:48:WU01:FS01:0xa7:ERROR:Environment variable OMP_NUM_THREADS (4) and the number of threads requested on the command line (1) have different values. Either omit one, or set them both to the same value.
17:40:48:WU01:FS01:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
17:40:48:WU01:FS01:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
17:40:48:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:40:48:WU01:FS01:0xa7:ERROR:
17:40:48:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:40:48:WU01:FS01:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20160919-669094a-unknown
17:40:48:WU01:FS01:0xa7:ERROR:Source code file: /host/windows-cross-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/gromacs/gmxlib/gmx_omp_nthreads.c, line: 211
17:40:48:WU01:FS01:0xa7:ERROR:
17:40:48:WU01:FS01:0xa7:ERROR:Fatal error:
17:40:48:WU01:FS01:0xa7:ERROR:Environment variable OMP_NUM_THREADS (4) and the number of threads requested on the command line (1) have different values. Either omit one, or set them both to the same value.
17:40:48:WU01:FS01:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
17:40:48:WU01:FS01:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
17:40:48:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:40:53:WU01:FS01:0xa7:ERROR:
17:40:53:WU01:FS01:0xa7:WARNING:Unexpected exit() call
17:40:53:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:40:53:WU01:FS01:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20160919-669094a-unknown
17:40:53:WU01:FS01:0xa7:ERROR:Source code file: /host/windows-cross-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/programs/mdrun/runner.c, line: 879
17:40:53:WU01:FS01:0xa7:ERROR:
17:40:53:WU01:FS01:0xa7:ERROR:Fatal error:
17:40:53:WU01:FS01:0xa7:ERROR:More than 1 OpenMP thread requested, but Gromacs was compiled without OpenMP support
17:40:53:WU01:FS01:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
17:40:53:WU01:FS01:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
17:40:53:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:40:57:WARNING:WU01:FS01:FahCore returned an unknown error code which probably indicates that it crashed
17:40:57:WARNING:WU01:FS01:FahCore returned: UNKNOWN_ENUM (-1073741784 = 0xc0000028)
17:41:42:WU01:FS01:Starting
17:41:42:WU01:FS01:Running FahCore: "C:\Program Files (x86)\FAHClient/FAHCoreWrapper.exe" C:\ProgramData\FAHClient\cores/web.stanford.edu/~pande/Win32/AMD64/Core_a7.fah/FahCore_a7.exe -dir 01 -suffix 01 -version 704 -lifeline 2580 -checkpoint 15 -np 4 -forceasm
17:41:42:WU01:FS01:Started FahCore on PID 4704
17:41:42:WU01:FS01:Core PID:4780
17:41:42:WU01:FS01:FahCore 0xa7 started
17:41:42:WU01:FS01:0xa7:*********************** Log Started 2016-10-27T17:41:42Z ***********************
17:41:42:WU01:FS01:0xa7:************************** Gromacs Folding@home Core ***************************
17:41:42:WU01:FS01:0xa7:       Type: 0xa7
17:41:42:WU01:FS01:0xa7:       Core: Gromacs
17:41:42:WU01:FS01:0xa7:    Website: http://folding.stanford.edu/
17:41:42:WU01:FS01:0xa7:  Copyright: (c) 2009-2016 Stanford University
17:41:42:WU01:FS01:0xa7:     Author: Joseph Coffland <joseph@cauldrondevelopment.com>
17:41:42:WU01:FS01:0xa7:       Args: -dir 01 -suffix 01 -version 704 -lifeline 4704 -checkpoint 15 -np 4
17:41:42:WU01:FS01:0xa7:             -forceasm
17:41:42:WU01:FS01:0xa7:     Config: <none>
17:41:42:WU01:FS01:0xa7:************************************ Build *************************************
17:41:42:WU01:FS01:0xa7:    Version: 0.0.11
17:41:42:WU01:FS01:0xa7:       Date: Sep 21 2016
17:41:42:WU01:FS01:0xa7:       Time: 01:53:37
17:41:42:WU01:FS01:0xa7: Repository: Git
17:41:42:WU01:FS01:0xa7:   Revision: 957bd90e68d95ddcf1594dc15ff6c64cc4555146
17:41:42:WU01:FS01:0xa7:     Branch: master
17:41:42:WU01:FS01:0xa7:   Compiler: GNU 4.2.1 Compatible Clang 3.9.0 (trunk 274080)
17:41:42:WU01:FS01:0xa7:    Options: -std=gnu++98 -O3 -funroll-loops -ffast-math -mfpmath=sse
17:41:42:WU01:FS01:0xa7:             -fno-unsafe-math-optimizations -msse2 -I/mingw64/include
17:41:42:WU01:FS01:0xa7:             -Wno-inconsistent-dllimport -Wno-parentheses-equality
17:41:42:WU01:FS01:0xa7:             -Wno-deprecated-register -Wno-unused-local-typedef
17:41:42:WU01:FS01:0xa7:   Platform: linux2 4.6.0-1-amd64
17:41:42:WU01:FS01:0xa7:       Bits: 64
17:41:42:WU01:FS01:0xa7:       Mode: Release
17:41:42:WU01:FS01:0xa7:       SIMD: sse2
17:41:42:WU01:FS01:0xa7:************************************ System ************************************
17:41:42:WU01:FS01:0xa7:        CPU: AMD Phenom(tm) II X4 965 Processor
17:41:42:WU01:FS01:0xa7:     CPU ID: AuthenticAMD Family 16 Model 4 Stepping 3
17:41:42:WU01:FS01:0xa7:       CPUs: 4
17:41:42:WU01:FS01:0xa7:     Memory: 16.00GiB
17:41:42:WU01:FS01:0xa7:Free Memory: 12.93GiB
17:41:42:WU01:FS01:0xa7:    Threads: WINDOWS_THREADS
17:41:42:WU01:FS01:0xa7: OS Version: 6.1
17:41:42:WU01:FS01:0xa7:Has Battery: false
17:41:42:WU01:FS01:0xa7: On Battery: false
17:41:42:WU01:FS01:0xa7: UTC Offset: 3
17:41:42:WU01:FS01:0xa7:        PID: 4780
17:41:42:WU01:FS01:0xa7:        CWD: C:\ProgramData\FAHClient\work
17:41:42:WU01:FS01:0xa7:         OS: Windows 7 Professional Service Pack 1
17:41:42:WU01:FS01:0xa7:    OS Arch: AMD64
17:41:42:WU01:FS01:0xa7:********************************************************************************
17:41:42:WU01:FS01:0xa7:Project: 11920 (Run 4105, Clone 0, Gen 58)
17:41:42:WU01:FS01:0xa7:Unit: 0x00000058ab40412957bfefa33d0ea78b
17:41:42:WU01:FS01:0xa7:Reading tar file core.xml
17:41:42:WU01:FS01:0xa7:Reading tar file frame58.tpr
17:41:42:WU01:FS01:0xa7:Digital signatures verified
17:41:42:WU01:FS01:0xa7:Calling: mdrun -s frame58.tpr -o frame58.trr -cpt 15 -nt 4
17:41:43:WU01:FS01:0xa7:ERROR:
17:41:43:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:41:43:WU01:FS01:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20160919-669094a-unknown
17:41:43:WU01:FS01:0xa7:ERROR:Source code file: /host/windows-cross-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/programs/mdrun/runner.c, line: 879
17:41:43:WU01:FS01:0xa7:ERROR:
17:41:43:WU01:FS01:0xa7:ERROR:Fatal error:
17:41:43:WU01:FS01:0xa7:ERROR:More than 1 OpenMP thread requested, but Gromacs was compiled without OpenMP support
17:41:43:WU01:FS01:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
17:41:43:WU01:FS01:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
17:41:43:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:41:48:WU01:FS01:0xa7:ERROR:
17:41:48:WU01:FS01:0xa7:ERROR:
17:41:48:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:41:48:WU01:FS01:0xa7:ERROR:
17:41:48:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:41:48:WU01:FS01:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20160919-669094a-unknown
17:41:48:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:41:48:WU01:FS01:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20160919-669094a-unknown
17:41:48:WU01:FS01:0xa7:ERROR:Source code file: /host/windows-cross-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/gromacs/gmxlib/gmx_omp_nthreads.c, line: 211
17:41:48:WU01:FS01:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20160919-669094a-unknown
17:41:48:WU01:FS01:0xa7:ERROR:Source code file: /host/windows-cross-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/gromacs/gmxlib/gmx_omp_nthreads.c, line: 211
17:41:48:WU01:FS01:0xa7:ERROR:
17:41:48:WU01:FS01:0xa7:ERROR:Source code file: /host/windows-cross-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/gromacs/gmxlib/gmx_omp_nthreads.c, line: 211
17:41:48:WU01:FS01:0xa7:ERROR:
17:41:48:WU01:FS01:0xa7:ERROR:Fatal error:
17:41:48:WU01:FS01:0xa7:ERROR:
17:41:48:WU01:FS01:0xa7:ERROR:Fatal error:
17:41:48:WU01:FS01:0xa7:ERROR:Environment variable OMP_NUM_THREADS (4) and the number of threads requested on the command line (1) have different values. Either omit one, or set them both to the same value.
17:41:48:WU01:FS01:0xa7:ERROR:Fatal error:
17:41:48:WU01:FS01:0xa7:ERROR:Environment variable OMP_NUM_THREADS (4) and the number of threads requested on the command line (1) have different values. Either omit one, or set them both to the same value.
17:41:48:WU01:FS01:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
17:41:48:WU01:FS01:0xa7:ERROR:Environment variable OMP_NUM_THREADS (4) and the number of threads requested on the command line (1) have different values. Either omit one, or set them both to the same value.
17:41:48:WU01:FS01:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
17:41:48:WU01:FS01:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
17:41:48:WU01:FS01:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
17:41:48:WU01:FS01:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
17:41:48:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:41:48:WU01:FS01:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
17:41:48:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:41:48:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:41:53:WU01:FS01:0xa7:ERROR:
17:41:53:WU01:FS01:0xa7:WARNING:Unexpected exit() call
17:41:53:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:41:53:WU01:FS01:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20160919-669094a-unknown
17:41:53:WU01:FS01:0xa7:ERROR:Source code file: /host/windows-cross-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/programs/mdrun/runner.c, line: 879
17:41:53:WU01:FS01:0xa7:ERROR:
17:41:53:WU01:FS01:0xa7:ERROR:Fatal error:
17:41:53:WU01:FS01:0xa7:ERROR:More than 1 OpenMP thread requested, but Gromacs was compiled without OpenMP support
17:41:53:WU01:FS01:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
17:41:53:WU01:FS01:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
17:41:53:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:41:56:WARNING:WU01:FS01:FahCore returned an unknown error code which probably indicates that it crashed
17:41:56:WARNING:WU01:FS01:FahCore returned: UNKNOWN_ENUM (-1073741784 = 0xc0000028)
17:42:42:WU01:FS01:Starting
17:42:42:WU01:FS01:Running FahCore: "C:\Program Files (x86)\FAHClient/FAHCoreWrapper.exe" C:\ProgramData\FAHClient\cores/web.stanford.edu/~pande/Win32/AMD64/Core_a7.fah/FahCore_a7.exe -dir 01 -suffix 01 -version 704 -lifeline 2580 -checkpoint 15 -np 4 -forceasm
17:42:42:WU01:FS01:Started FahCore on PID 4944
17:42:42:WU01:FS01:Core PID:1900
17:42:42:WU01:FS01:FahCore 0xa7 started
17:42:43:WU01:FS01:0xa7:*********************** Log Started 2016-10-27T17:42:42Z ***********************
17:42:43:WU01:FS01:0xa7:************************** Gromacs Folding@home Core ***************************
17:42:43:WU01:FS01:0xa7:       Type: 0xa7
17:42:43:WU01:FS01:0xa7:       Core: Gromacs
17:42:43:WU01:FS01:0xa7:    Website: http://folding.stanford.edu/
17:42:43:WU01:FS01:0xa7:  Copyright: (c) 2009-2016 Stanford University
17:42:43:WU01:FS01:0xa7:     Author: Joseph Coffland <joseph@cauldrondevelopment.com>
17:42:43:WU01:FS01:0xa7:       Args: -dir 01 -suffix 01 -version 704 -lifeline 4944 -checkpoint 15 -np 4
17:42:43:WU01:FS01:0xa7:             -forceasm
17:42:43:WU01:FS01:0xa7:     Config: <none>
17:42:43:WU01:FS01:0xa7:************************************ Build *************************************
17:42:43:WU01:FS01:0xa7:    Version: 0.0.11
17:42:43:WU01:FS01:0xa7:       Date: Sep 21 2016
17:42:43:WU01:FS01:0xa7:       Time: 01:53:37
17:42:43:WU01:FS01:0xa7: Repository: Git
17:42:43:WU01:FS01:0xa7:   Revision: 957bd90e68d95ddcf1594dc15ff6c64cc4555146
17:42:43:WU01:FS01:0xa7:     Branch: master
17:42:43:WU01:FS01:0xa7:   Compiler: GNU 4.2.1 Compatible Clang 3.9.0 (trunk 274080)
17:42:43:WU01:FS01:0xa7:    Options: -std=gnu++98 -O3 -funroll-loops -ffast-math -mfpmath=sse
17:42:43:WU01:FS01:0xa7:             -fno-unsafe-math-optimizations -msse2 -I/mingw64/include
17:42:43:WU01:FS01:0xa7:             -Wno-inconsistent-dllimport -Wno-parentheses-equality
17:42:43:WU01:FS01:0xa7:             -Wno-deprecated-register -Wno-unused-local-typedef
17:42:43:WU01:FS01:0xa7:   Platform: linux2 4.6.0-1-amd64
17:42:43:WU01:FS01:0xa7:       Bits: 64
17:42:43:WU01:FS01:0xa7:       Mode: Release
17:42:43:WU01:FS01:0xa7:       SIMD: sse2
17:42:43:WU01:FS01:0xa7:************************************ System ************************************
17:42:43:WU01:FS01:0xa7:        CPU: AMD Phenom(tm) II X4 965 Processor
17:42:43:WU01:FS01:0xa7:     CPU ID: AuthenticAMD Family 16 Model 4 Stepping 3
17:42:43:WU01:FS01:0xa7:       CPUs: 4
17:42:43:WU01:FS01:0xa7:     Memory: 16.00GiB
17:42:43:WU01:FS01:0xa7:Free Memory: 12.88GiB
17:42:43:WU01:FS01:0xa7:    Threads: WINDOWS_THREADS
17:42:43:WU01:FS01:0xa7: OS Version: 6.1
17:42:43:WU01:FS01:0xa7:Has Battery: false
17:42:43:WU01:FS01:0xa7: On Battery: false
17:42:43:WU01:FS01:0xa7: UTC Offset: 3
17:42:43:WU01:FS01:0xa7:        PID: 1900
17:42:43:WU01:FS01:0xa7:        CWD: C:\ProgramData\FAHClient\work
17:42:43:WU01:FS01:0xa7:         OS: Windows 7 Professional Service Pack 1
17:42:43:WU01:FS01:0xa7:    OS Arch: AMD64
17:42:43:WU01:FS01:0xa7:********************************************************************************
17:42:43:WU01:FS01:0xa7:Project: 11920 (Run 4105, Clone 0, Gen 58)
17:42:43:WU01:FS01:0xa7:Unit: 0x00000058ab40412957bfefa33d0ea78b
17:42:43:WU01:FS01:0xa7:Reading tar file core.xml
17:42:43:WU01:FS01:0xa7:Reading tar file frame58.tpr
17:42:43:WU01:FS01:0xa7:Digital signatures verified
17:42:43:WU01:FS01:0xa7:Calling: mdrun -s frame58.tpr -o frame58.trr -cpt 15 -nt 4
17:42:44:WU01:FS01:0xa7:ERROR:
17:42:44:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:42:44:WU01:FS01:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20160919-669094a-unknown
17:42:44:WU01:FS01:0xa7:ERROR:Source code file: /host/windows-cross-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/programs/mdrun/runner.c, line: 879
17:42:44:WU01:FS01:0xa7:ERROR:
17:42:44:WU01:FS01:0xa7:ERROR:Fatal error:
17:42:44:WU01:FS01:0xa7:ERROR:More than 1 OpenMP thread requested, but Gromacs was compiled without OpenMP support
17:42:44:WU01:FS01:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
17:42:44:WU01:FS01:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
17:42:44:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:42:49:WU01:FS01:0xa7:ERROR:
17:42:49:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:42:49:WU01:FS01:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20160919-669094a-unknown
17:42:49:WU01:FS01:0xa7:ERROR:
17:42:49:WU01:FS01:0xa7:ERROR:
17:42:49:WU01:FS01:0xa7:ERROR:Source code file: /host/windows-cross-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/gromacs/gmxlib/gmx_omp_nthreads.c, line: 211
17:42:49:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:42:49:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:42:49:WU01:FS01:0xa7:ERROR:
17:42:49:WU01:FS01:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20160919-669094a-unknown
17:42:49:WU01:FS01:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20160919-669094a-unknown
17:42:49:WU01:FS01:0xa7:ERROR:Fatal error:
17:42:49:WU01:FS01:0xa7:ERROR:Source code file: /host/windows-cross-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/gromacs/gmxlib/gmx_omp_nthreads.c, line: 211
17:42:49:WU01:FS01:0xa7:ERROR:Source code file: /host/windows-cross-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/gromacs/gmxlib/gmx_omp_nthreads.c, line: 211
17:42:49:WU01:FS01:0xa7:ERROR:Environment variable OMP_NUM_THREADS (4) and the number of threads requested on the command line (1) have different values. Either omit one, or set them both to the same value.
17:42:49:WU01:FS01:0xa7:ERROR:
17:42:49:WU01:FS01:0xa7:ERROR:
17:42:49:WU01:FS01:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
17:42:49:WU01:FS01:0xa7:ERROR:Fatal error:
17:42:49:WU01:FS01:0xa7:ERROR:Fatal error:
17:42:49:WU01:FS01:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
17:42:49:WU01:FS01:0xa7:ERROR:Environment variable OMP_NUM_THREADS (4) and the number of threads requested on the command line (1) have different values. Either omit one, or set them both to the same value.
17:42:49:WU01:FS01:0xa7:ERROR:Environment variable OMP_NUM_THREADS (4) and the number of threads requested on the command line (1) have different values. Either omit one, or set them both to the same value.
17:42:49:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:42:49:WU01:FS01:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
17:42:49:WU01:FS01:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
17:42:49:WU01:FS01:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
17:42:49:WU01:FS01:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
17:42:49:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:42:49:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:42:54:WU01:FS01:0xa7:ERROR:
17:42:54:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:42:54:WU01:FS01:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20160919-669094a-unknown
17:42:54:WU01:FS01:0xa7:WARNING:Unexpected exit() call
17:42:54:WU01:FS01:0xa7:ERROR:Source code file: /host/windows-cross-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/programs/mdrun/runner.c, line: 879
17:42:54:WU01:FS01:0xa7:ERROR:
17:42:54:WU01:FS01:0xa7:ERROR:Fatal error:
17:42:54:WU01:FS01:0xa7:ERROR:More than 1 OpenMP thread requested, but Gromacs was compiled without OpenMP support
17:42:54:WU01:FS01:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
17:42:54:WU01:FS01:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
17:42:54:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:42:58:WARNING:WU01:FS01:FahCore returned an unknown error code which probably indicates that it crashed
17:42:58:WARNING:WU01:FS01:FahCore returned: UNKNOWN_ENUM (-1073741784 = 0xc0000028)
17:43:42:WU01:FS01:Starting
17:43:42:WU01:FS01:Running FahCore: "C:\Program Files (x86)\FAHClient/FAHCoreWrapper.exe" C:\ProgramData\FAHClient\cores/web.stanford.edu/~pande/Win32/AMD64/Core_a7.fah/FahCore_a7.exe -dir 01 -suffix 01 -version 704 -lifeline 2580 -checkpoint 15 -np 4 -forceasm
17:43:42:WU01:FS01:Started FahCore on PID 2072
17:43:42:WU01:FS01:Core PID:4532
17:43:42:WU01:FS01:FahCore 0xa7 started
17:43:43:WU01:FS01:0xa7:*********************** Log Started 2016-10-27T17:43:42Z ***********************
17:43:43:WU01:FS01:0xa7:************************** Gromacs Folding@home Core ***************************
17:43:43:WU01:FS01:0xa7:       Type: 0xa7
17:43:43:WU01:FS01:0xa7:       Core: Gromacs
17:43:43:WU01:FS01:0xa7:    Website: http://folding.stanford.edu/
17:43:43:WU01:FS01:0xa7:  Copyright: (c) 2009-2016 Stanford University
17:43:43:WU01:FS01:0xa7:     Author: Joseph Coffland <joseph@cauldrondevelopment.com>
17:43:43:WU01:FS01:0xa7:       Args: -dir 01 -suffix 01 -version 704 -lifeline 2072 -checkpoint 15 -np 4
17:43:43:WU01:FS01:0xa7:             -forceasm
17:43:43:WU01:FS01:0xa7:     Config: <none>
17:43:43:WU01:FS01:0xa7:************************************ Build *************************************
17:43:43:WU01:FS01:0xa7:    Version: 0.0.11
17:43:43:WU01:FS01:0xa7:       Date: Sep 21 2016
17:43:43:WU01:FS01:0xa7:       Time: 01:53:37
17:43:43:WU01:FS01:0xa7: Repository: Git
17:43:43:WU01:FS01:0xa7:   Revision: 957bd90e68d95ddcf1594dc15ff6c64cc4555146
17:43:43:WU01:FS01:0xa7:     Branch: master
17:43:43:WU01:FS01:0xa7:   Compiler: GNU 4.2.1 Compatible Clang 3.9.0 (trunk 274080)
17:43:43:WU01:FS01:0xa7:    Options: -std=gnu++98 -O3 -funroll-loops -ffast-math -mfpmath=sse
17:43:43:WU01:FS01:0xa7:             -fno-unsafe-math-optimizations -msse2 -I/mingw64/include
17:43:43:WU01:FS01:0xa7:             -Wno-inconsistent-dllimport -Wno-parentheses-equality
17:43:43:WU01:FS01:0xa7:             -Wno-deprecated-register -Wno-unused-local-typedef
17:43:43:WU01:FS01:0xa7:   Platform: linux2 4.6.0-1-amd64
17:43:43:WU01:FS01:0xa7:       Bits: 64
17:43:43:WU01:FS01:0xa7:       Mode: Release
17:43:43:WU01:FS01:0xa7:       SIMD: sse2
17:43:43:WU01:FS01:0xa7:************************************ System ************************************
17:43:43:WU01:FS01:0xa7:        CPU: AMD Phenom(tm) II X4 965 Processor
17:43:43:WU01:FS01:0xa7:     CPU ID: AuthenticAMD Family 16 Model 4 Stepping 3
17:43:43:WU01:FS01:0xa7:       CPUs: 4
17:43:43:WU01:FS01:0xa7:     Memory: 16.00GiB
17:43:43:WU01:FS01:0xa7:Free Memory: 12.87GiB
17:43:43:WU01:FS01:0xa7:    Threads: WINDOWS_THREADS
17:43:43:WU01:FS01:0xa7: OS Version: 6.1
17:43:43:WU01:FS01:0xa7:Has Battery: false
17:43:43:WU01:FS01:0xa7: On Battery: false
17:43:43:WU01:FS01:0xa7: UTC Offset: 3
17:43:43:WU01:FS01:0xa7:        PID: 4532
17:43:43:WU01:FS01:0xa7:        CWD: C:\ProgramData\FAHClient\work
17:43:43:WU01:FS01:0xa7:         OS: Windows 7 Professional Service Pack 1
17:43:43:WU01:FS01:0xa7:    OS Arch: AMD64
17:43:43:WU01:FS01:0xa7:********************************************************************************
17:43:43:WU01:FS01:0xa7:Project: 11920 (Run 4105, Clone 0, Gen 58)
17:43:43:WU01:FS01:0xa7:Unit: 0x00000058ab40412957bfefa33d0ea78b
17:43:43:WU01:FS01:0xa7:Reading tar file core.xml
17:43:43:WU01:FS01:0xa7:Reading tar file frame58.tpr
17:43:43:WU01:FS01:0xa7:Digital signatures verified
17:43:43:WU01:FS01:0xa7:Calling: mdrun -s frame58.tpr -o frame58.trr -cpt 15 -nt 4
17:43:44:WU01:FS01:0xa7:ERROR:
17:43:44:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:43:44:WU01:FS01:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20160919-669094a-unknown
17:43:44:WU01:FS01:0xa7:ERROR:Source code file: /host/windows-cross-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/programs/mdrun/runner.c, line: 879
17:43:44:WU01:FS01:0xa7:ERROR:
17:43:44:WU01:FS01:0xa7:ERROR:Fatal error:
17:43:44:WU01:FS01:0xa7:ERROR:More than 1 OpenMP thread requested, but Gromacs was compiled without OpenMP support
17:43:44:WU01:FS01:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
17:43:44:WU01:FS01:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
17:43:44:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:43:49:WU01:FS01:0xa7:ERROR:
17:43:49:WU01:FS01:0xa7:ERROR:
17:43:49:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:43:49:WU01:FS01:0xa7:ERROR:
17:43:49:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:43:49:WU01:FS01:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20160919-669094a-unknown
17:43:49:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:43:49:WU01:FS01:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20160919-669094a-unknown
17:43:49:WU01:FS01:0xa7:ERROR:Source code file: /host/windows-cross-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/gromacs/gmxlib/gmx_omp_nthreads.c, line: 211
17:43:49:WU01:FS01:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20160919-669094a-unknown
17:43:49:WU01:FS01:0xa7:ERROR:Source code file: /host/windows-cross-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/gromacs/gmxlib/gmx_omp_nthreads.c, line: 211
17:43:49:WU01:FS01:0xa7:ERROR:
17:43:49:WU01:FS01:0xa7:ERROR:Source code file: /host/windows-cross-64bit-core-a7-sse-release/gromacs-core/build/gromacs/src/gromacs/gmxlib/gmx_omp_nthreads.c, line: 211
17:43:49:WU01:FS01:0xa7:ERROR:
17:43:49:WU01:FS01:0xa7:ERROR:Fatal error:
17:43:49:WU01:FS01:0xa7:ERROR:
17:43:49:WU01:FS01:0xa7:ERROR:Fatal error:
17:43:49:WU01:FS01:0xa7:ERROR:Environment variable OMP_NUM_THREADS (4) and the number of threads requested on the command line (1) have different values. Either omit one, or set them both to the same value.
17:43:49:WU01:FS01:0xa7:ERROR:Fatal error:
17:43:49:WU01:FS01:0xa7:ERROR:Environment variable OMP_NUM_THREADS (4) and the number of threads requested on the command line (1) have different values. Either omit one, or set them both to the same value.
17:43:49:WU01:FS01:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
17:43:49:WU01:FS01:0xa7:ERROR:Environment variable OMP_NUM_THREADS (4) and the number of threads requested on the command line (1) have different values. Either omit one, or set them both to the same value.
17:43:49:WU01:FS01:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
17:43:49:WU01:FS01:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
17:43:49:WU01:FS01:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
17:43:49:WU01:FS01:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
17:43:49:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:43:49:WU01:FS01:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
17:43:49:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
17:43:49:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
As I could understand the client downloads the WU, breaks off and downloads the new WU cyclically. Changing core setting for the CPU slot did not help. Any ideas what to do?

Re: Too short expiration time or too slow performance? (Core

Posted: Fri Oct 28, 2016 12:43 am
by bruce
I think the topic viewtopic.php?f=96&t=29273 might be helpful.

(I see references to OMP_NUM_THREADS in your error messages.)

Re: Too short expiration time or too slow performance? (Core

Posted: Fri Oct 28, 2016 12:30 pm
by ejsanyo
bruce wrote:I think the topic viewtopic.php?f=96&t=29273 might be helpful.
Very unsuspected patch, huh. Thanks, I'll try it.

Re: Too short expiration time or too slow performance? (Core

Posted: Fri Oct 28, 2016 3:23 pm
by bruce
The project description of Project 11920 notes that it is a copy of Project 9752 for testing of Core_a7. Project 9752 had the same deadlines and apparently they have caused no problems for that project using FahCore_a4.

FAHCore_a7 is expected to be equal to or faster than Core A4 ... Thus we probably can conclude you've discovered a problem with Core A7. The noted work-around and eventual fix for that environment variable might resolve the issue entirely... or might not.

I do recommend that you either use 3 CPU cores, together with GPU processing (or suspend GPU processing and use all 4 CPU cores). Hopefully Core_a7 will complete the WU's processing using 3 cores.
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