Project: 6067 (Run 0, Clone 76, Gen 207) EUE
Posted: Sun Feb 20, 2011 11:40 pm
Code: Select all
11:04:32] Project: 6067 (Run 0, Clone 76, Gen 207)
[11:04:32]
[11:04:32] Assembly optimizations on if available.
[11:04:32] Entering M.D.
Starting 2 threads
NNODES=2, MYRANK=1, HOSTNAME=thread #1
NNODES=2, MYRANK=0, HOSTNAME=thread #0
Reading file work/wudata_03.tpr, VERSION 4.0.99_development_20090605 (single precision)
Making 1D domain decomposition 2 x 1 x 1
starting mdrun 'Mutant_scan'
104000008 steps, 208000.0 ps (continuing from step 103500008, 207000.0 ps).
[11:04:38] Completed 0 out of 500000 steps (0%)
[11:21:01] Completed 5000 out of 500000 steps (1%)
[11:37:24] Completed 10000 out of 500000 steps (2%)
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Program mdrun, VERSION 4.0.99-dev-20100429-354a3
Source code file: /Users/kasson/a3_devnew/gromacs/src/mdlib/pme.c, line: 563
Fatal error:
4 particles communicated to PME node 0 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension xThis usually means that your system is not well equilibrated
For more information and tips for trouble shooting please check the GROMACS website at
http://www.gromacs.org/Documentation/Errors
-------------------------------------------------------
Thanx for Using GROMACS - Have a Nice Day
[11:52:08] mdrun returned 255
[11:52:08] Going to send back what have done -- stepsTotalG=500000
[11:52:08] Work fraction=0.0290 steps=500000.
[11:52:12] logfile size=13136 infoLength=13136 edr=0 trr=25
[11:52:12] logfile size: 13136 info=13136 bed=0 hdr=25
[11:52:12] - Writing 13674 bytes of core data to disk...
[11:52:12] ... Done.
[11:52:13]
[11:52:13] Folding@home Core Shutdown: EARLY_UNIT_END
[11:52:13] CoreStatus = 72 (114)
[11:52:13] Sending work to server
[11:52:13] Project: 6067 (Run 0, Clone 76, Gen 207)
Over the weekend had been stable ..... so is not completely broken
[23:37:18] Project: 6025 (Run 1, Clone 155, Gen 374)
[03:49:56] Folding@home Core Shutdown: FINISHED_UNIT
[03:49:56] Project: 6025 (Run 1, Clone 155, Gen 374)
[04:09:09] Project: 6024 (Run 0, Clone 88, Gen 379)
[07:11:17] Folding@home Core Shutdown: FINISHED_UNIT
[07:11:18] Project: 6024 (Run 0, Clone 88, Gen 379)
[07:27:38] Project: 6050 (Run 1, Clone 170, Gen 268)
[11:02:57] Folding@home Core Shutdown: FINISHED_UNIT
[11:02:57] Project: 6050 (Run 1, Clone 170, Gen 268)
[11:04:32] Project: 6067 (Run 0, Clone 76, Gen 207)
[11:52:13] Folding@home Core Shutdown: EARLY_UNIT_END
[11:52:13] Project: 6067 (Run 0, Clone 76, Gen 207)
[11:52:27] Project: 6025 (Run 0, Clone 178, Gen 457)
up to 46 %
Let me know if you want be to retire this C2D Mac Mini from from folding. I don't want it doing bad science and I have some other bigger boxes folding perfectly.
Gannett