Project: 6060 (Run 1, Clone 24, Gen 128), Core: a3
Posted: Thu Feb 17, 2011 7:30 am
Project: 6060 (Run 1, Clone 24, Gen 128), Core: a3
This may be a bogus fail as I did stop and restart unit. Between stoping and restarting unit I upgraded this Mac Mini core2Sduo to OSX 10.6.6 Snow Leopard from Leopard 10.5.6. Sorry for the disruption. Machine had been rock solid before over 250 work units and is now on %26 of next unit Project: 6025 (Run 1, Clone 155, Gen 374).
This may be a bogus fail as I did stop and restart unit. Between stoping and restarting unit I upgraded this Mac Mini core2Sduo to OSX 10.6.6 Snow Leopard from Leopard 10.5.6. Sorry for the disruption. Machine had been rock solid before over 250 work units and is now on %26 of next unit Project: 6025 (Run 1, Clone 155, Gen 374).
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[16:55:54] Project: 6060 (Run 1, Clone 24, Gen 128)
[16:55:54]
[16:55:54] Assembly optimizations on if available.
[16:55:54] Entering M.D.
[16:56:00] Using Gromacs checkpoints
Starting 2 threads
NNODES=2, MYRANK=1, HOSTNAME=thread #1
NNODES=2, MYRANK=0, HOSTNAME=thread #0
Reading file work/wudata_08.tpr, VERSION 4.0.99_development_20090605 (single precision)
Reading checkpoint file work/wudata_08.cpt generated: Tue Feb 15 08:17:38 2011
Making 1D domain decomposition 2 x 1 x 1
starting mdrun 'Mutant_scan'
64500004 steps, 129000.0 ps (continuing from step 64134021, 128268.0 ps).
[16:56:01] Resuming from checkpoint
[16:56:01] Verified work/wudata_08.log
[16:56:01] Verified work/wudata_08.trr
[16:56:01] Verified work/wudata_08.edr
[16:56:01] Completed 134017 out of 500000 steps (26%)
[16:59:25] Completed 135000 out of 500000 steps (27%)
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Program mdrun, VERSION 4.0.99-dev-20100429-354a3
Source code file: /Users/kasson/a3_devnew/gromacs/src/mdlib/pme.c, line: 563
Fatal error:
3 particles communicated to PME node 1 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension xThis usually means that your system is not well equilibrated
For more information and tips for trouble shooting please check the GROMACS website at
http://www.gromacs.org/Documentation/Errors
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Thanx for Using GROMACS - Have a Nice Day
[17:04:39] mdrun returned 255
[17:04:39] Going to send back what have done -- stepsTotalG=500000
[17:04:39] Work fraction=0.2730 steps=500000.
[17:04:43] logfile size=23003 infoLength=23003 edr=0 trr=25
[17:04:43] logfile size: 23003 info=23003 bed=0 hdr=25
[17:04:43] - Writing 23541 bytes of core data to disk...
[17:04:43] ... Done.
[17:04:43]
[17:04:43] Folding@home Core Shutdown: UNSTABLE_MACHINE
[17:04:44] CoreStatus = 7A (122)
[17:04:44] Sending work to server
[17:04:44] Project: 6060 (Run 1, Clone 24, Gen 128)