Folding Forum

Code: Select all

[00:09:16] *------------------------------*
[00:09:16] Folding@Home Gromacs SMP Core
[00:09:16] Version 2.22 (June 10, 2010)
[00:09:16] 
[00:09:16] Preparing to commence simulation
[00:09:16] - Looking at optimizations...
[00:09:16] - Created dyn
[00:09:16] - Files status OK
[00:09:17] - Expanded 7883510 -> 10126021 (decompressed 128.4 percent)
[00:09:17] Called DecompressByteArray: compressed_data_size=7883510 data_size=10126021, decompressed_data_size=10126021 diff=0
[00:09:17] - Digital signature verified
[00:09:17] 
[00:09:17] Project: 6041 (Run 0, Clone 26, Gen 39)
[00:09:17] 
[00:09:17] Assembly optimizations on if available.
[00:09:17] Entering M.D.
Starting 4 threads
NNODES=4, MYRANK=0, HOSTNAME=thread #0
NNODES=4, MYRANK=3, HOSTNAME=thread #3
NNODES=4, MYRANK=1, HOSTNAME=thread #1
NNODES=4, MYRANK=2, HOSTNAME=thread #2
Reading file work/wudata_09.tpr, VERSION 4.0.99_development_20090605 (single precision)
Making 1D domain decomposition 4 x 1 x 1
starting mdrun '8817 system'
10000001 steps,  40000.0 ps (continuing from step 9750001,  39000.0 ps).

step 9750001: Water molecule starting at atom 146647 can not be settled.
Check for bad contacts and/or reduce the timestep if appropriate.
[00:09:26] Completed 0 out of 250000 steps  (0%)
Segmentation fault
[00:09:26] CoreStatus = 8B (139)
[00:09:26] Client-core communications error: ERROR 0x8b
[00:09:26] Deleting current work unit & continuing...