project 2683 run 6 clone 15 generation 72
Posted: Sun Jun 06, 2010 10:09 pm
work unit seems to hang at:
Code: Select all
jimerickson@odysseus:/home/smp2$ LD_LIBRARY_PATH=/home/jimerickson/lib64-fah ./fah6
Note: Please read the license agreement (fah6 -license). Further
use of this software requires that you have read and accepted this agreement.
8 cores detected
--- Opening Log file [June 6 21:07:21 UTC]
# Linux SMP Console Edition ###################################################
###############################################################################
Folding@Home Client Version 6.29
http://folding.stanford.edu
###############################################################################
###############################################################################
Launch directory: /home/smp2
Executable: ./fah6
Arguments: -bigadv -smp 8
[21:07:21] - Ask before connecting: No
[21:07:21] - User name: jimerickson (Team 45104)
[21:07:21] - User ID: 70F679F068A079C
[21:07:21] - Machine ID: 1
[21:07:21]
[21:07:21] Loaded queue successfully.
[21:07:21]
[21:07:21] + Processing work unit
[21:07:21] Core required: FahCore_a2.exe
[21:07:21] Core found.
[21:07:21] Working on queue slot 05 [June 6 21:07:21 UTC]
[21:07:21] + Working ...
Affinity: numa_discover returned 8, numa_valid: 1
Affinity: node 0 cpu mask: 000000ff
PID 3978: will run on CPU 1, node 0
PID 3979: will run on CPU 2, node 0
PID 3980: will run on CPU 3, node 0
PID 3981: will run on CPU 4, node 0
PID 3982: will run on CPU 5, node 0
PID 3983: will run on CPU 6, node 0
PID 3984: will run on CPU 7, node 0
PID 3985: will run on CPU 8, node 0
NNODES=8, MYRANK=1, HOSTNAME=odysseus
NNODES=8, MYRANK=3, HOSTNAME=odysseus
NODEID=3 argc=23
NNODES=8, MYRANK=4, HOSTNAME=odysseus
NODEID=4 argc=23
NNODES=8, MYRANK=5, HOSTNAME=odysseus
NODEID=5 argc=23
NNODES=8, MYRANK=6, HOSTNAME=odysseus
NODEID=6 argc=23
NNODES=8, MYRANK=7, HOSTNAME=odysseus
NNODES=8, MYRANK=0, HOSTNAME=odysseus
NODEID=0 argc=23
NODEID=1 argc=23
NNODES=8, MYRANK=2, HOSTNAME=odysseus
NODEID=2 argc=23
NODEID=7 argc=23
Reading file work/wudata_05.tpr, VERSION 3.3.99_development_20070618 (single precision)
Note: tpx file_version 48, software version 68
Reading checkpoint file work/wudata_05.cpt generated: Sun Jun 6 15:58:18 2010
NOTE: The tpr file used for this simulation is in an old format, for less memory usage and possibly more performance create a new tpr file with an up to date version of grompp
Making 1D domain decomposition 8 x 1 x 1
starting mdrun 'SINGLE VESICLE in water'
18250002 steps, 73000.0 ps (continuing from step 18004155, 72016.6 ps).