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FahMon problem (absolute noob apologetic already)
Posted: Wed Apr 21, 2010 7:23 pm
by WacoJohn
Not sure I am in the right forum. Not sure I am in the right topic. Pretty lost. I apologize for what I don't know.
System:
Xubuntu 9.10
Compaq Presario 700MHz Celeron Coppermine
512MB Memory 128KB L2 Cache
Free space 5.2G
NVidia GeForce2 MX 100/200 Video Ram 32 MB
Up 24/7
Installed "Origami" 0.7-0ubuntu1 ... not sure I installed the right one or how to find out. Found it in Package Manager. I am a member of a folding 'team'.
Installed "FahMon" 2.3.99.1
That is about all I know. Am assuming it is working though with some indications, maybe not.
FahMon default screen:
Progress: 4% Name: Folding ETA: 3d 02h 13mn PPD: 23.07 Core: Gromacs PRCG: P6503 (R5, C629,G2) Credit: 75 points Downloaded: 3h 44mn ago Deadline: 13d 20h 12mn
FAHLOG looks OK.
I guess I am contributing something, but this doesn't look good to me:
This is troubling ... FAHMON Messages:
[19/04/10 - 12:50:26.100] X Error while reading /var/lib/origami/foldingathome/CPU1/work/logfile_00.txt
[19/04/10 - 12:50:26.100] X Error while reading /var/lib/origami/foldingathome/CPU1/unitinfo.txt!
[19/04/10 - 12:55:25.796] X Error while reading /var/lib/origami/foldingathome/CPU1/work/logfile_00.txt
[19/04/10 - 12:55:25.796] X Error while reading /var/lib/origami/foldingathome/CPU1/unitinfo.txt!
[19/04/10 - 13:00:25.812] X Error while reading /var/lib/origami/foldingathome/CPU1/work/logfile_00.txt
[19/04/10 - 13:00:25.812] X Error while reading /var/lib/origami/foldingathome/CPU1/unitinfo.txt!
[19/04/10 - 13:05:26.000] X Error while reading /var/lib/origami/foldingathome/CPU1/work/logfile_00.txt
[19/04/10 - 13:05:26.001] X Error while reading /var/lib/origami/foldingathome/CPU1/unitinfo.txt!
[19/04/10 - 13:10:25.851] X Error while reading /var/lib/origami/foldingathome/CPU1/work/logfile_00.txt
[19/04/10 - 13:10:25.851] X Error while reading /var/lib/origami/foldingathome/CPU1/unitinfo.txt!
[19/04/10 - 13:14:25.617] X Error while reading /var/lib/origami/foldingathome/CPU1/work/logfile_00.txt
[19/04/10 - 13:14:25.618] X Error while reading /var/lib/origami/foldingathome/CPU1/unitinfo.txt!
[19/04/10 - 13:15:25.857] X Error while reading /var/lib/origami/foldingathome/CPU1/work/logfile_00.txt
[19/04/10 - 13:15:25.857] X Error while reading /var/lib/origami/foldingathome/CPU1/unitinfo.txt!
[19/04/10 - 13:20:25.899] X Error while reading /var/lib/origami/foldingathome/CPU1/work/logfile_00.txt
[19/04/10 - 13:20:25.899] X Error while reading /var/lib/origami/foldingathome/CPU1/unitinfo.txt!
[19/04/10 - 13:25:25.993] X Error while reading /var/lib/origami/foldingathome/CPU1/work/logfile_00.txt
[19/04/10 - 13:25:25.993] X Error while reading /var/lib/origami/foldingathome/CPU1/unitinfo.txt!
[19/04/10 - 13:30:25.994] X Error while reading /var/lib/origami/foldingathome/CPU1/work/logfile_00.txt
[19/04/10 - 13:30:25.994] X Error while reading /var/lib/origami/foldingathome/CPU1/unitinfo.txt!
[19/04/10 - 13:35:26.099] X Error while reading /var/lib/origami/foldingathome/CPU1/work/logfile_00.txt
[19/04/10 - 13:35:26.099] X Error while reading /var/lib/origami/foldingathome/CPU1/unitinfo.txt!
[19/04/10 - 13:40:26.091] X Error while reading /var/lib/origami/foldingathome/CPU1/work/logfile_00.txt
[19/04/10 - 13:40:26.092] X Error while reading /var/lib/origami/foldingathome/CPU1/unitinfo.txt!
[19/04/10 - 13:45:26.201] X Error while reading /var/lib/origami/foldingathome/CPU1/work/logfile_00.txt
[19/04/10 - 13:45:26.201] X Error while reading /var/lib/origami/foldingathome/CPU1/unitinfo.txt!
[19/04/10 - 13:50:26.236] X Error while reading /var/lib/origami/foldingathome/CPU1/work/logfile_01.txt
[19/04/10 - 13:50:26.237] X Error while reading /var/lib/origami/foldingathome/CPU1/unitinfo.txt!
[19/04/10 - 13:55:27.231] X Error while reading /var/lib/origami/foldingathome/CPU1/work/logfile_01.txt
[19/04/10 - 13:59:02.169] X Error while reading /var/lib/origami/foldingathome/CPU1/work/logfile_01.txt
[19/04/10 - 14:00:26.381] X Error while reading /var/lib/origami/foldingathome/CPU1/work/logfile_01.txt
[19/04/10 - 14:05:26.462] X Error while reading /var/lib/origami/foldingathome/CPU1/work/logfile_01.txt
[19/04/10 - 14:10:26.459] X Error while reading /var/lib/origami/foldingathome/CPU1/work/logfile_01.txt
Any advice, tips, criticisms, etc are most welcome. Thank you for your support.
Re: absolute noob apologetic already
Posted: Wed Apr 21, 2010 8:09 pm
by patonb
run fahmon as admin... Well atleast with windows you have to...
But it is running correctly.
go and open the actual log file, it should read proper.
Re: absolute noob apologetic already
Posted: Wed Apr 21, 2010 8:15 pm
by bruce
I don't run in that environment but FanMon is a 3rd party tool supported by it's author and he's probably the only one that can help you. FAH will run just fine if you shut it down and presumably that will get rid of the error messages -- or you can just ignore them.
I do like FahMon but there are other 3rd party tools that you can use to monitor your progress -- or you can learn to decipher the information from FAHlog. I don't have a good recommendation for your environment, though.
I'll move your post to the right forum.
Re: FahMon problem (absolute noob apologetic already)
Posted: Wed Apr 21, 2010 10:10 pm
by PantherX
You could browse through this list and hopefully come across something useful (
http://foldingforum.org/viewtopic.php?f=14&t=52)
Re: FahMon problem (absolute noob apologetic already)
Posted: Wed Apr 21, 2010 11:58 pm
by WacoJohn
Thank you, all for the kind replies. I find some good resources within. It seems I need to post my original post in a Linux forum of some sort .. and I will try to find one. I will continue this thread in case someone has some specific comments but want to thank you for your replies.
Re: FahMon problem (absolute noob apologetic already)
Posted: Thu Apr 22, 2010 1:00 am
by bruce
FahMon is supported here:
http://trac.fahmon.net/
Re: FahMon problem (absolute noob apologetic already)
Posted: Wed Apr 28, 2010 3:58 am
by chrisretusn
WacoJohn wrote:I guess I am contributing something, but this doesn't look good to me:
This is troubling ... FAHMON Messages:
[19/04/10 - 12:50:26.100] X Error while reading /var/lib/origami/foldingathome/CPU1/work/logfile_00.txt
[19/04/10 - 12:50:26.100] X Error while reading /var/lib/origami/foldingathome/CPU1/unitinfo.txt!
I had to look up
Origami.
I don't use Ubuntu, (use Slackware) but this could be a permission problem not a FahMon problem.
How are you running FahMon? From your own user account?
Can you post a directory listing of /var/lib/origami/foldingathome/CPU1/work/?
Open a terminal and issue the command (and post the results.):
ls -l /var/lib/origami/foldingathome/CPU1/work/
Re: FahMon problem (absolute noob apologetic already)
Posted: Wed Apr 28, 2010 4:23 am
by WacoJohn
I am thinking everything is OK because those errors came from the FAHMON VIEW "LOG" .. but after running for a few days, the log does NOT show those errors .. just data of successful cycles. It may be I was viewing the log before FAHMON got fully initialized or at some point where it was doing normal 'errors'. FAHMON LOG looks 'pretty good to me' at this point.
Actually here is the log view as of tonight. Those errors appeared right after I installed it. I think I just jumped the gun in viewing the log .. if that makes any sense. Thank you all for your valuable time.:
Code: Select all
[19:27:52] Writing local files
[19:27:53] Completed 12500 out of 250000 steps (5%)
[20:11:57] Writing local files
[20:11:58] Completed 15000 out of 250000 steps (6%)
[20:55:37] Writing local files
[20:55:38] Completed 17500 out of 250000 steps (7%)
[21:39:15] Writing local files
[21:39:15] Completed 20000 out of 250000 steps (8%)
[22:22:53] Writing local files
[22:22:53] Completed 22500 out of 250000 steps (9%)
[23:06:32] Writing local files
[23:06:32] Completed 25000 out of 250000 steps (10%)
[23:50:11] Writing local files
[23:50:12] Completed 27500 out of 250000 steps (11%)
[00:33:47] Writing local files
[00:33:48] Completed 30000 out of 250000 steps (12%)
[01:17:24] Writing local files
[01:17:24] Completed 32500 out of 250000 steps (13%)
[02:01:01] Writing local files
[02:01:01] Completed 35000 out of 250000 steps (14%)
[02:44:37] Writing local files
[02:44:37] Completed 37500 out of 250000 steps (15%)
[03:28:16] Writing local files
[03:28:16] Completed 40000 out of 250000 steps (16%)
[04:11:53] Writing local files
[04:11:53] Completed 42500 out of 250000 steps (17%)
[04:55:31] Writing local files
[04:55:31] Completed 45000 out of 250000 steps (18%)
[05:39:09] Writing local files
[05:39:09] Completed 47500 out of 250000 steps (19%)
[06:22:47] Writing local files
[06:22:47] Completed 50000 out of 250000 steps (20%)
[07:06:23] Writing local files
[07:06:23] Completed 52500 out of 250000 steps (21%)
[07:50:01] Writing local files
[07:50:01] Completed 55000 out of 250000 steps (22%)
[08:33:38] Writing local files
[08:33:38] Completed 57500 out of 250000 steps (23%)
[09:17:14] Writing local files
[09:17:14] Completed 60000 out of 250000 steps (24%)
[10:00:48] Writing local files
[10:00:49] Completed 62500 out of 250000 steps (25%)
[10:44:27] Writing local files
[10:44:27] Completed 65000 out of 250000 steps (26%)
[11:27:59] Writing local files
[11:28:00] Completed 67500 out of 250000 steps (27%)
[12:11:37] Writing local files
[12:11:37] Completed 70000 out of 250000 steps (28%)
[12:55:31] Writing local files
[12:55:31] Completed 72500 out of 250000 steps (29%)
[13:39:06] Writing local files
[13:39:06] Completed 75000 out of 250000 steps (30%)
[14:22:42] Writing local files
[14:22:42] Completed 77500 out of 250000 steps (31%)
[15:06:18] Writing local files
[15:06:19] Completed 80000 out of 250000 steps (32%)
[15:49:55] Writing local files
[15:49:55] Completed 82500 out of 250000 steps (33%)
[16:33:34] Writing local files
[16:33:34] Completed 85000 out of 250000 steps (34%)
[17:17:11] Writing local files
[17:17:11] Completed 87500 out of 250000 steps (35%)
[18:00:46] Writing local files
[18:00:46] Completed 90000 out of 250000 steps (36%)
[18:44:22] Writing local files
[18:44:23] Completed 92500 out of 250000 steps (37%)
[19:27:59] Writing local files
[19:27:59] Completed 95000 out of 250000 steps (38%)
[20:11:33] Writing local files
[20:11:34] Completed 97500 out of 250000 steps (39%)
[20:55:12] Writing local files
[20:55:13] Completed 100000 out of 250000 steps (40%)
[21:38:49] Writing local files
[21:38:49] Completed 102500 out of 250000 steps (41%)
[22:22:26] Writing local files
[22:22:26] Completed 105000 out of 250000 steps (42%)
[23:06:05] Writing local files
[23:06:05] Completed 107500 out of 250000 steps (43%)
[23:49:43] Writing local files
[23:49:43] Completed 110000 out of 250000 steps (44%)
[00:33:21] Writing local files
[00:33:22] Completed 112500 out of 250000 steps (45%)
[01:17:01] Writing local files
[01:17:01] Completed 115000 out of 250000 steps (46%)
[02:00:39] Writing local files
[02:00:39] Completed 117500 out of 250000 steps (47%)
[02:44:17] Writing local files
[02:44:17] Completed 120000 out of 250000 steps (48%)
[03:27:56] Writing local files
[03:27:56] Completed 122500 out of 250000 steps (49%)
[04:11:34] Writing local files
[04:11:34] Completed 125000 out of 250000 steps (50%)
[04:55:11] Writing local files
[04:55:11] Completed 127500 out of 250000 steps (51%)
[05:38:50] Writing local files
[05:38:50] Completed 130000 out of 250000 steps (52%)
[06:22:27] Writing local files
[06:22:27] Completed 132500 out of 250000 steps (53%)
[07:06:02] Writing local files
[07:06:02] Completed 135000 out of 250000 steps (54%)
[07:49:39] Writing local files
[07:49:40] Completed 137500 out of 250000 steps (55%)
[08:33:20] Writing local files
[08:33:20] Completed 140000 out of 250000 steps (56%)
[09:16:58] Writing local files
[09:16:58] Completed 142500 out of 250000 steps (57%)
[10:00:36] Writing local files
[10:00:36] Completed 145000 out of 250000 steps (58%)
[10:44:15] Writing local files
[10:44:15] Completed 147500 out of 250000 steps (59%)
[11:27:53] Writing local files
[11:27:53] Completed 150000 out of 250000 steps (60%)
[12:11:32] Writing local files
[12:11:32] Completed 152500 out of 250000 steps (61%)
[12:55:12] Writing local files
[12:55:12] Completed 155000 out of 250000 steps (62%)
[13:38:59] Writing local files
[13:38:59] Completed 157500 out of 250000 steps (63%)
[14:22:40] Writing local files
[14:22:40] Completed 160000 out of 250000 steps (64%)
[15:06:20] Writing local files
[15:06:20] Completed 162500 out of 250000 steps (65%)
[15:49:59] Writing local files
[15:50:00] Completed 165000 out of 250000 steps (66%)
[16:33:39] Writing local files
[16:33:39] Completed 167500 out of 250000 steps (67%)
[17:22:32] Writing local files
[17:22:32] Completed 170000 out of 250000 steps (68%)
[18:13:58] Writing local files
[18:13:58] Completed 172500 out of 250000 steps (69%)
[18:57:38] Writing local files
[18:57:38] Completed 175000 out of 250000 steps (70%)
[19:41:20] Writing local files
[19:41:20] Completed 177500 out of 250000 steps (71%)
[20:24:58] Writing local files
[20:24:59] Completed 180000 out of 250000 steps (72%)
[21:08:37] Writing local files
[21:08:37] Completed 182500 out of 250000 steps (73%)
[21:52:15] Writing local files
[21:52:15] Completed 185000 out of 250000 steps (74%)
[22:35:53] Writing local files
[22:35:53] Completed 187500 out of 250000 steps (75%)
[23:19:32] Writing local files
[23:19:32] Completed 190000 out of 250000 steps (76%)
[00:03:14] Writing local files
[00:03:15] Completed 192500 out of 250000 steps (77%)
[00:46:55] Writing local files
[00:46:55] Completed 195000 out of 250000 steps (78%)
[01:30:35] Writing local files
[01:30:35] Completed 197500 out of 250000 steps (79%)
[02:14:14] Writing local files
[02:14:14] Completed 200000 out of 250000 steps (80%)
[02:57:53] Writing local files
[02:57:53] Completed 202500 out of 250000 steps (81%)
[03:41:31] Writing local files
[03:41:31] Completed 205000 out of 250000 steps (82%)
[04:25:09] Writing local files
[04:25:09] Completed 207500 out of 250000 steps (83%)
[05:08:48] Writing local files
[05:08:48] Completed 210000 out of 250000 steps (84%)
[05:52:27] Writing local files
[05:52:27] Completed 212500 out of 250000 steps (85%)
[06:36:07] Writing local files
[06:36:07] Completed 215000 out of 250000 steps (86%)
[07:19:44] Writing local files
[07:19:44] Completed 217500 out of 250000 steps (87%)
[08:03:24] Writing local files
[08:03:24] Completed 220000 out of 250000 steps (88%)
[08:47:02] Writing local files
[08:47:02] Completed 222500 out of 250000 steps (89%)
[09:30:37] Writing local files
[09:30:38] Completed 225000 out of 250000 steps (90%)
[10:14:12] Writing local files
[10:14:12] Completed 227500 out of 250000 steps (91%)
[10:57:48] Writing local files
[10:57:48] Completed 230000 out of 250000 steps (92%)
[11:41:23] Writing local files
[11:41:23] Completed 232500 out of 250000 steps (93%)
[12:24:59] Writing local files
[12:25:00] Completed 235000 out of 250000 steps (94%)
[13:13:25] Writing local files
[13:13:26] Completed 237500 out of 250000 steps (95%)
[13:57:03] Writing local files
[13:57:03] Completed 240000 out of 250000 steps (96%)
[14:40:42] Writing local files
[14:40:42] Completed 242500 out of 250000 steps (97%)
[15:24:20] Writing local files
[15:24:21] Completed 245000 out of 250000 steps (98%)
[16:07:56] Writing local files
[16:07:57] Completed 247500 out of 250000 steps (99%)
[16:51:37] Writing local files
[16:51:37] Completed 250000 out of 250000 steps (100%)
[16:51:37] Writing final coordinates.
[16:51:37] Past main M.D. loop
[16:52:37]
[16:52:37] Finished Work Unit:
[16:52:37] - Reading up to 409176 from "work/wudata_04.arc": Read 409176
[16:52:38] - Reading up to 219540 from "work/wudata_04.xtc": Read 219540
[16:52:38] goefile size: 0
[16:52:38] logfile size: 59576
[16:52:38] Leaving Run
[16:52:38] - Writing 757112 bytes of core data to disk...
[16:52:39] Done: 756600 -> 652783 (compressed to 86.2 percent)
[16:52:39] ... Done.
[16:53:00] - Shutting down core
[16:53:00]
[16:53:00] Folding@home Core Shutdown: FINISHED_UNIT
[16:53:40] CoreStatus = 64 (100)
[16:53:40] Sending work to server
[16:53:40] + Attempting to send results
[16:53:44] + Results successfully sent
[16:53:44] Thank you for your contribution to Folding@Home.
[16:53:44] + Starting local stats count at 1
[16:53:50] - Preparing to get new work unit...
[16:53:50] + Attempting to get work packet
[16:53:50] - Connecting to assignment server
[16:53:50] - Successful: assigned to (171.64.65.65).
[16:53:50] + News From Folding@Home: Welcome to Folding@Home
[16:53:50] Loaded queue successfully.
[16:53:50] + Could not connect to Work Server
[16:53:50] - Attempt #1 to get work failed, and no other work to do.
Waiting before retry.
[16:54:09] + Attempting to get work packet
[16:54:09] - Connecting to assignment server
[16:54:10] - Successful: assigned to (171.64.65.65).
[16:54:10] + News From Folding@Home: Welcome to Folding@Home
[16:54:10] Loaded queue successfully.
[16:54:24] + Closed connections
[16:54:24]
[16:54:24] + Processing work unit
[16:54:24] Core required: FahCore_78.exe
[16:54:24] Core found.
[16:54:24] Working on Unit 05 [April 24 16:54:24]
[16:54:24] + Working ...
[16:54:24]
[16:54:24] *------------------------------*
[16:54:24] Folding@Home Gromacs Core
[16:54:24] Version 1.90 (March 8, 2006)
[16:54:24]
[16:54:24] Preparing to commence simulation
[16:54:24] - Looking at optimizations...
[16:54:24] - Created dyn
[16:54:24] - Files status OK
[16:54:37] - Expanded 9258109 -> 47924691 (decompressed 53.7 percent)
[16:54:41] - Starting from initial work packet
[16:54:41]
[16:54:41] Project: 2613 (Run 60, Clone 3, Gen 174)
[16:54:41]
[16:54:41] Assembly optimizations on if available.
[16:54:41] Entering M.D.
[16:55:00] Protein: p2613_TETHERED VESICLES
[16:55:00]
[16:55:00] Writing local files
[16:55:24] Extra SSE boost OK.
[16:55:29] Writing local files
[16:55:32] Completed 0 out of 125000 steps (0%)
[19:43:34] Writing local files
[19:43:37] Completed 1250 out of 125000 steps (1%)
[22:31:33] Writing local files
[22:31:36] Completed 2500 out of 125000 steps (2%)
[01:19:34] Writing local files
[01:19:38] Completed 3750 out of 125000 steps (3%)
[04:07:34] Writing local files
[04:07:37] Completed 5000 out of 125000 steps (4%)
[06:55:34] Writing local files
[06:55:37] Completed 6250 out of 125000 steps (5%)
[09:43:34] Writing local files
[09:43:37] Completed 7500 out of 125000 steps (6%)
[12:31:34] Writing local files
[12:31:37] Completed 8750 out of 125000 steps (7%)
[15:19:56] Writing local files
[15:19:59] Completed 10000 out of 125000 steps (8%)
[18:07:56] Writing local files
[18:07:59] Completed 11250 out of 125000 steps (9%)
[20:55:56] Writing local files
[20:56:00] Completed 12500 out of 125000 steps (10%)
[23:43:56] Writing local files
[23:43:59] Completed 13750 out of 125000 steps (11%)
[02:31:56] Writing local files
[02:31:59] Completed 15000 out of 125000 steps (12%)
[05:19:56] Writing local files
[05:19:59] Completed 16250 out of 125000 steps (13%)
[08:07:57] Writing local files
[08:08:00] Completed 17500 out of 125000 steps (14%)
[10:55:56] Writing local files
[10:56:00] Completed 18750 out of 125000 steps (15%)
[13:44:17] Writing local files
[13:44:20] Completed 20000 out of 125000 steps (16%)
[16:32:16] Writing local files
[16:32:19] Completed 21250 out of 125000 steps (17%)
[19:20:15] Writing local files
[19:20:18] Completed 22500 out of 125000 steps (18%)
[22:08:16] Writing local files
[22:08:19] Completed 23750 out of 125000 steps (19%)
[00:56:16] Writing local files
[00:56:19] Completed 25000 out of 125000 steps (20%)
[03:44:15] Writing local files
[03:44:18] Completed 26250 out of 125000 steps (21%)
[06:32:13] Writing local files
[06:32:17] Completed 27500 out of 125000 steps (22%)
[09:20:13] Writing local files
[09:20:17] Completed 28750 out of 125000 steps (23%)
[12:08:13] Writing local files
[12:08:16] Completed 30000 out of 125000 steps (24%)
[13:08:47]
[13:08:47] Folding@home Core Shutdown: UNKNOWN_ERROR
[13:43:32] CoreStatus = 77 (119)
[13:43:32] Client-core communications error: ERROR 0x77
[13:43:32] Deleting current work unit & continuing...
[13:48:46] - Preparing to get new work unit...
[13:48:46] + Attempting to get work packet
[13:48:46] - Connecting to assignment server
[13:48:46] - Successful: assigned to (171.64.65.62).
[13:48:46] + News From Folding@Home: Welcome to Folding@Home
[13:48:46] Loaded queue successfully.
[13:48:47] + Closed connections
[13:48:52]
[13:48:52] + Processing work unit
[13:48:52] Core required: FahCore_78.exe
[13:48:52] Core found.
[13:48:52] Working on Unit 06 [April 27 13:48:52]
[13:48:52] + Working ...
[13:48:52]
[13:48:52] *------------------------------*
[13:48:52] Folding@Home Gromacs Core
[13:48:52] Version 1.90 (March 8, 2006)
[13:48:52]
[13:48:52] Preparing to commence simulation
[13:48:52] - Looking at optimizations...
[13:48:52] - Created dyn
[13:48:52] - Files status OK
[13:48:53] - Expanded 419949 -> 2026461 (decompressed 482.5 percent)
[13:48:53] - Starting from initial work packet
[13:48:53]
[13:48:53] Project: 6502 (Run 6, Clone 31, Gen 10)
[13:48:53]
[13:48:53] Assembly optimizations on if available.
[13:48:53] Entering M.D.
[13:49:00] Protein: TR462_A_7 in water
[13:49:00]
[13:49:00] Writing local files
[13:49:01] Extra SSE boost OK.
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Re: FahMon problem (absolute noob apologetic already)
Posted: Wed Apr 28, 2010 4:25 am
by WacoJohn
OH .. I cannot access /var/lib/origami/foldingathome/CPU1/work/ I can drill down to CPU1 but listing /work gives access denied. Yes, running FAHMON from my account.
Re: FahMon problem (absolute noob apologetic already)
Posted: Wed Apr 28, 2010 7:39 am
by chrisretusn
Yes indeed based on your FAHlog.txt folding is working just like it should. So lets tackle the problem with FahMon.
You should at least be able to see that work directory.
What are the permissions for the /var/lib/origami/foldingathome/CPU1/ directory. Can you do a:
ls -l /var/lib/origami/foldingathome/CPU1/
and then do:
sudo ls -l /var/lib/origami/foldingathome/CPU1/work/
Based on what I have read about Origami, it should show owner as origami and group as users, users should have read permission.
Oh one point of advice, when posting logs or listings it is best to place them between code blocks such as this
[code]paste the log text here[/code]
In my next post I will give an example.
Re: FahMon problem (absolute noob apologetic already)
Posted: Wed Apr 28, 2010 7:46 am
by chrisretusn
Here is an example, this is my folding directory.
Code: Select all
~$ ls -l /home/folder/fah6-1/
total 19764
-rw-r--r-- 1 folder users 64055 2010-04-21 13:36 FAHlog-Prev.txt
-rw-r--r-- 1 folder users 41963 2010-04-24 05:12 FAHlog.txt
-rwxr-xr-- 1 folder users 3435296 2009-09-23 14:51 FahCore_78.exe*
-rwxr-x--- 1 folder users 3625104 2010-02-03 09:13 FahCore_a1.exe*
-rwxr-x--- 1 folder users 5509624 2009-12-19 10:15 FahCore_a2.exe*
-rwxr-x--- 1 folder users 4415280 2010-03-21 06:36 FahCore_a3.exe*
-rw-r--r-- 1 folder users 5241 2010-04-23 10:25 MyFolding.html
-rw-r--r-- 1 folder users 248 2010-04-24 05:12 client.cfg
-rwxr-xr-x 1 folder users 1104112 2010-01-22 00:25 fah6*
-rw-r--r-- 1 folder users 8 2009-09-23 11:41 machinedependent.dat
-rwx------ 1 folder users 68492 2007-07-17 02:02 mpiexec*
-rw-r--r-- 1 folder users 7168 2010-04-24 05:12 queue.dat
-rw-r--r-- 1 folder users 161 2010-04-24 04:55 unitinfo.txt
drwxr-xr-- 2 folder users 110592 2010-04-24 05:12 work/
and my work directory. Note: I am currently on a hiatus from folding because of the heat where I live so the work directory is missing the associated work files for a working WU.
Code: Select all
~$ ls -l /home/folder/fah6-1/work
Password:
total 18608
-rw-r--r-- 1 folder users 454743 2010-03-26 14:24 current.xyz
-rwxr-x--- 1 folder users 2099 2010-04-22 04:47 logfile_05.txt
-rw-r--r-- 1 folder users 1853880 2010-04-12 11:29 wudata_00_prev.cpt
-rw-r--r-- 1 folder users 1853880 2010-04-14 07:17 wudata_01_prev.cpt
-rw-r--r-- 1 folder users 1853880 2010-04-16 04:15 wudata_02_prev.cpt
-rw-r--r-- 1 folder users 1860828 2010-04-18 03:48 wudata_03_prev.cpt
-rw-r--r-- 1 folder users 1860828 2010-04-20 02:17 wudata_04_prev.cpt
-rw-r--r-- 1 folder users 1851648 2010-04-22 04:35 wudata_05_prev.cpt
-rw-r--r-- 1 folder users 1850280 2010-04-24 04:41 wudata_06_prev.cpt
-rw-r--r-- 1 folder users 1853880 2010-04-24 05:12 wudata_07_prev.cpt
-rw-r--r-- 1 folder users 1860828 2010-04-09 02:23 wudata_08_prev.cpt
-rw-r--r-- 1 folder users 1864484 2010-04-10 17:27 wudata_09_prev.cpt
Re: FahMon problem (absolute noob apologetic already)
Posted: Wed Apr 28, 2010 3:29 pm
by WacoJohn
>>Oh one point of advice, when posting logs or listings it is best to place them between code blocks such as this
Uh .. OK, .. hope I did it right. Thank you:
Code: Select all
jb@jb-desktop:~$ ls -l /var/lib/origami/foldingathome/CPU1/
total 3436
-rw-r--r-- 1 origami nogroup 141 2010-04-24 11:53 client.cfg
-rw-r--r-- 1 origami nogroup 129 2010-04-19 10:46 client.cfg.origami
-rwxr-xr-x 1 origami nogroup 2294 2010-04-19 10:45 FaH
lrwxrwxrwx 1 origami nogroup 40 2010-04-19 10:45 FAH504-Console.exe -> /var/lib/origami/foldingathome/CPU1/fah6
lrwxrwxrwx 1 origami nogroup 35 2010-04-19 10:45 fah6 -> /var/lib/origami/foldingathome/fah6
-rwxr-x--- 1 origami nogroup 3435296 2010-04-21 10:08 FahCore_78.exe
-rw-r--r-- 1 origami nogroup 39498 2010-04-28 09:50 FAHlog.txt
-rw-r--r-- 1 origami nogroup 8 2010-04-19 10:46 machinedependent.dat
-rw-r--r-- 1 origami nogroup 1502 2010-04-19 10:46 MyFolding.html
-rw-r--r-- 1 origami nogroup 7168 2010-04-27 08:48 queue.dat
-rw-r--r-- 1 origami nogroup 167 2010-04-28 09:50 unitinfo.txt
drwxr-x--- 2 origami nogroup 4096 2010-04-27 08:49 work
Code: Select all
jb@jb-desktop:~$ sudo ls -l /var/lib/origami/foldingathome/CPU1/work
[sudo] password for jb:
total 3592
-rw-r--r-- 1 origami nogroup 0 2010-04-27 08:48 core78.sta
-rw-r--r-- 1 origami nogroup 53461 2010-04-28 09:50 current.xyz
-rwxr-x--- 1 origami nogroup 3331 2010-04-28 09:50 logfile_06.txt
-rw-r--r-- 1 origami nogroup 0 2010-04-27 08:48 wudata_06.arc
-rw-r--r-- 1 origami nogroup 31572 2010-04-28 09:17 wudata_06.bed
-rw-r--r-- 1 origami nogroup 174 2010-04-28 10:05 wudata_06.bxv
-rw-r--r-- 1 origami nogroup 229 2010-04-28 10:05 wudata_06.chk
-rw-r--r-- 1 origami nogroup 473844 2010-04-28 10:05 wudata_06CP.arc
-rw-r--r-- 1 origami nogroup 473844 2010-04-28 10:05 wudata_06CP.arc.b
-rw-r--r-- 1 origami nogroup 420461 2010-04-27 08:48 wudata_06.dat
-rw-r--r-- 1 origami nogroup 8 2010-04-27 08:48 wudata_06.dyn
-rw-r--r-- 1 origami nogroup 0 2010-04-27 08:48 wudata_06.goe
-rw-r--r-- 1 origami nogroup 47886 2010-04-28 10:05 wudata_06.log
-rw-r--r-- 1 origami nogroup 0 2010-04-27 08:48 wudata_06.pdo
-rw-r--r-- 1 origami nogroup 0 2010-04-27 08:48 wudata_06.sas
-rw-r--r-- 1 origami nogroup 105812 2010-04-28 09:17 wudata_06.xtc
-rw-r--r-- 1 origami nogroup 0 2010-04-27 08:48 wudata_06.xvg
-rw-r--r-- 1 origami nogroup 2026461 2010-04-27 08:48 wudata_06.xyz
-rwxr-x--- 1 origami nogroup 512 2010-04-28 09:50 wuinfo_06.dat
Re: FahMon problem (absolute noob apologetic already)
Posted: Thu Apr 29, 2010 9:44 am
by chrisretusn
Perfectly.
Well it is definitely permissions that is causing the problems with FahMon. The owner and group permissions are OK. The problem lies in the group, which is currently nogroup. Folding@home works OK because that is what it expects. FahMon on the other hand cannot read the files it need. The easiest and simplest solution is to simply add your user to the group nogroup.
The other would be to change the group for the /var/lib/origami/foldingathome/ directory and it's subdirectories to users.
Re: FahMon problem (absolute noob apologetic already)
Posted: Thu Apr 29, 2010 2:08 pm
by WacoJohn
The easiest and simplest solution is to simply add your user to the group nogroup
Uhm, . not for this absolute noob. With easy, simple instructions , .. maybe. Thank you in advance.
Re: FahMon problem (absolute noob apologetic already)
Posted: Fri Apr 30, 2010 12:28 am
by chrisretusn
To add your user name to the group nogroup:
sudo usermod -aG nogroup LOGIN
Where LOGIN is your user name.