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Project: 10006 (Run 4440, Clone 1, Gen 0) Guru Meditation?

https://foldingforum.org/viewtopic.php?t=14032

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Project: 10006 (Run 4440, Clone 1, Gen 0) Guru Meditation?

Posted: Thu Apr 01, 2010 3:32 am
by John_Weatherman
Project: 10006 (Run 4440, Clone 1, Gen 0) Guru meditation error after re-start, then downloaded same WU again. Is there a problem with this WU?

Code: Select all


--- Opening Log file [March 29 23:32:33 UTC] 


# Windows CPU Console Edition #################################################
###############################################################################

                       Folding@Home Client Version 6.23

                          http://folding.stanford.edu

###############################################################################
###############################################################################

Launch directory: C:\Documents and Settings\robert\Mina dokument\F@H6.23
Service: C:\Documents and Settings\robert\Mina dokument\F@H6.23\Folding@home-Win32-x86.exe
Arguments: -svcstart -d C:\Documents and Settings\robert\Mina dokument\F@H6.23 -verbosity9 -forceasm -verbosity 9 -forceasm 

Launched as a service.
Entered C:\Documents and Settings\robert\Mina dokument\F@H6.23 to do work.

Warning:
 By using the -forceasm flag, you are overriding
 safeguards in the program. If you did not intend to
 do this, please restart the program without -forceasm.
 If work units are not completing fully (and particularly
 if your machine is overclocked), then please discontinue
 use of the flag.

[23:32:33] - Ask before connecting: No
[23:32:33] - User name: John_Weatherman (Team 48913)
[23:32:33] - User ID: 1AD525710FE40E68
[23:32:33] - Machine ID: 1
[23:32:33] 
[23:32:33] Loaded queue successfully.
[23:32:33] - Preparing to get new work unit...
[23:32:33] + Attempting to get work packet
[23:32:33] - Will indicate memory of 1013 MB
[23:32:33] - Autosending finished units... [March 29 23:32:33 UTC]
[23:32:33] Trying to send all finished work units
[23:32:33] + No unsent completed units remaining.
[23:32:33] - Autosend completed
[23:32:33] - Detect CPU. Vendor: GenuineIntel, Family: 6, Model: 12, Stepping: 2
[23:32:33] - Connecting to assignment server
[23:32:33] Connecting to http://assign.stanford.edu:8080/
[23:32:34] Posted data.
[23:32:34] Initial: 4A81; - Successful: assigned to (129.74.85.48).
[23:32:34] + News From Folding@Home: Welcome to Folding@Home
[23:32:34] Loaded queue successfully.
[23:32:34] Connecting to http://129.74.85.48:8080/
[23:32:59] Posted data.
[23:32:59] Initial: 0000; - Receiving payload (expected size: 77396)
[23:34:19] + Could not get Work unit data from Work Server
[23:34:19] - Attempt #1  to get work failed, and no other work to do.
Waiting before retry.
[23:34:36] + Attempting to get work packet
[23:34:36] - Will indicate memory of 1013 MB
[23:34:36] - Connecting to assignment server
[23:34:36] Connecting to http://assign.stanford.edu:8080/
[23:34:37] Posted data.
[23:34:37] Initial: 4A81; - Successful: assigned to (129.74.85.48).
[23:34:37] + News From Folding@Home: Welcome to Folding@Home
[23:34:38] Loaded queue successfully.
[23:34:38] Connecting to http://129.74.85.48:8080/
[23:34:46] Posted data.
[23:34:46] Initial: 0000; - Receiving payload (expected size: 38728)
[23:35:24] - Downloaded at ~0 kB/s
[23:35:24] - Averaged speed for that direction ~10 kB/s
[23:35:24] + Received work.
[23:35:24] + Closed connections
[23:35:24] 
[23:35:24] + Processing work unit
[23:35:24] Core required: FahCore_b4.exe
[23:35:24] Core not found.
[23:35:24] - Core is not present or corrupted.
[23:35:24] - Attempting to download new core...
[23:35:24] + Downloading new core: FahCore_b4.exe
[23:35:24] Downloading core (/~pande/Win32/x86/Core_b4.fah from www.stanford.edu)
[23:35:24] Initial: AFDE; + 10240 bytes downloaded
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[23:35:44] Initial: FFFF; + 5089280 bytes downloaded
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[23:35:44] Initial: 0420; + 5120000 bytes downloaded
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[23:35:44] Initial: 1E33; + 5160960 bytes downloaded
[23:35:44] Initial: C685; + 5169901 bytes downloaded
[23:35:44] Verifying core Core_b4.fah...
[23:35:44] Signature is VALID
[23:35:44] 
[23:35:44] Trying to unzip core FahCore_b4.exe
[23:35:52] Decompressed FahCore_b4.exe (16564224 bytes) successfully
[23:35:57] + Core successfully engaged
[23:36:03] 
[23:36:03] + Processing work unit
[23:36:03] Core required: FahCore_b4.exe
[23:36:03] Core found.
[23:36:03] Working on queue slot 02 [March 29 23:36:03 UTC]
[23:36:03] + Working ...
[23:36:03] - Calling '.\FahCore_b4.exe -dir work/ -suffix 02 -checkpoint 10 -service -forceasm -verbose -lifeline 5744 -version 623'

[23:36:09] *********************** Log Started 29/Mar/2010 23:36:09 ***********************
[23:36:09] ************************** ProtoMol Folding@Home Core **************************
[23:36:09]   Version: 23
[23:36:09]      Type: 180
[23:36:09]      Core: ProtoMol
[23:36:09]   Website: http://folding.stanford.edu/
[23:36:09] Copyright: (c) 2009 Stanford University
[23:36:09]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[23:36:09]      Args: -dir work/ -suffix 02 -checkpoint 10 -service -forceasm -verbose
[23:36:09]            -lifeline 5744 -version 623
[23:36:09] ************************************ Build *************************************
[23:36:09]      Date: Mar 22 2010
[23:36:09]      Time: 16:55:15
[23:36:09]  Revision: 1789
[23:36:09]  Compiler: Intel(R) C++ MSVC 1500 mode 1110
[23:36:09]   Options: /TP /nologo /EHsc /wd4297 /wd4103 /wd1786 /arch:IA32 /Ox
[23:36:09]            /QaxSSE2,SSE3,SSSE3,SSE4.1,SSE4.2 /Qrestrict /MT
[23:36:09]   Defines: _CRT_SECURE_NO_WARNINGS NDEBUG HAVE_GEEKINFO BOOST_ALL_NO_LIB
[23:36:09]            XML_STATIC HAVE_EXPAT HAVE_OPENSSL HAVE_LIBFAH HAVE_SIMTK_LAPACK
[23:36:09]  Platform: Windows XP
[23:36:09]      Bits: 32
[23:36:09]      Mode: Release
[23:36:09] ************************************ System ************************************
[23:36:09]        OS: Microsoft Windows XP Home Edition
[23:36:09]       CPU: Intel(R) Atom(TM) CPU N270 @ 1.60GHz
[23:36:09]    CPU ID: GenuineIntel Family 6 Model 28 Stepping 2
[23:36:09]      CPUs: 2 Logical, 1 Physical
[23:36:09]    Memory: 1014 MB
[23:36:09]   Threads: Windows
[23:36:09] ********************************************************************************
[23:36:09] Project: 10006 (Run 4440, Clone 1, Gen 0)
[23:36:09] Reading tar file par_all27_prot_lipid.inp
[23:36:09] Reading tar file scpismQuartic.inp
[23:36:09] Reading tar file ww_exteq_nowater1.pdb
[23:36:09] Reading tar file ww_exteq_nowater1.psf
[23:36:09] Reading tar file protomol.conf
[23:36:09] Reading tar file core.xml
[23:36:09] Digital signatures verified
[23:36:12] GUI Server started
[23:36:12] Completed 0 out of 500000 steps (0%)
[00:08:35] Completed 5000 out of 500000 steps (1%)
[00:41:00] Completed 10000 out of 500000 steps (2%)
[01:13:19] Completed 15000 out of 500000 steps (3%)
[01:45:34] Completed 20000 out of 500000 steps (4%)
[02:17:46] Completed 25000 out of 500000 steps (5%)
[02:50:07] Completed 30000 out of 500000 steps (6%)
[03:22:17] Completed 35000 out of 500000 steps (7%)
[03:54:09] Completed 40000 out of 500000 steps (8%)
[04:25:58] Completed 45000 out of 500000 steps (9%)
[04:58:25] Completed 50000 out of 500000 steps (10%)
[05:32:33] - Autosending finished units... [March 30 05:32:33 UTC]
[05:32:33] Trying to send all finished work units
[05:32:33] + No unsent completed units remaining.
[05:32:33] - Autosend completed
[05:32:42] Completed 55000 out of 500000 steps (11%)
[06:07:34] Completed 60000 out of 500000 steps (12%)
[06:39:31] Completed 65000 out of 500000 steps (13%)
[07:11:32] Completed 70000 out of 500000 steps (14%)
[07:43:27] Completed 75000 out of 500000 steps (15%)
[08:15:23] Completed 80000 out of 500000 steps (16%)
[08:47:32] Completed 85000 out of 500000 steps (17%)
[09:20:06] Completed 90000 out of 500000 steps (18%)
[09:52:18] Completed 95000 out of 500000 steps (19%)
[10:24:34] Completed 100000 out of 500000 steps (20%)
[10:56:56] Completed 105000 out of 500000 steps (21%)
[11:29:23] Completed 110000 out of 500000 steps (22%)
[11:32:33] - Autosending finished units... [March 30 11:32:33 UTC]
[11:32:33] Trying to send all finished work units
[11:32:33] + No unsent completed units remaining.
[11:32:33] - Autosend completed
[12:01:46] Completed 115000 out of 500000 steps (23%)
[12:35:00] Completed 120000 out of 500000 steps (24%)
[13:08:46] Completed 125000 out of 500000 steps (25%)
[13:42:42] Completed 130000 out of 500000 steps (26%)
[14:16:02] Completed 135000 out of 500000 steps (27%)
[14:49:24] Completed 140000 out of 500000 steps (28%)
[15:22:59] Completed 145000 out of 500000 steps (29%)
[15:56:10] Completed 150000 out of 500000 steps (30%)
[16:29:25] Completed 155000 out of 500000 steps (31%)
[17:02:22] Completed 160000 out of 500000 steps (32%)
[17:32:33] - Autosending finished units... [March 30 17:32:33 UTC]
[17:32:33] Trying to send all finished work units
[17:32:33] + No unsent completed units remaining.
[17:32:33] - Autosend completed
[17:34:51] Completed 165000 out of 500000 steps (33%)
[18:07:20] Completed 170000 out of 500000 steps (34%)
[18:39:52] Completed 175000 out of 500000 steps (35%)
[19:12:34] Completed 180000 out of 500000 steps (36%)
[19:45:27] Completed 185000 out of 500000 steps (37%)
[20:18:38] Completed 190000 out of 500000 steps (38%)
[20:51:53] Completed 195000 out of 500000 steps (39%)
[21:25:09] Completed 200000 out of 500000 steps (40%)
[21:58:48] Completed 205000 out of 500000 steps (41%)
[22:33:12] Completed 210000 out of 500000 steps (42%)
[23:06:53] Completed 215000 out of 500000 steps (43%)
[23:32:33] - Autosending finished units... [March 30 23:32:33 UTC]
[23:32:33] Trying to send all finished work units
[23:32:33] + No unsent completed units remaining.
[23:32:33] - Autosend completed
[23:39:52] Completed 220000 out of 500000 steps (44%)
[00:12:42] Completed 225000 out of 500000 steps (45%)
[00:45:48] Completed 230000 out of 500000 steps (46%)
[01:19:36] Completed 235000 out of 500000 steps (47%)
[01:53:52] Completed 240000 out of 500000 steps (48%)
[02:28:04] Completed 245000 out of 500000 steps (49%)
[03:02:30] Completed 250000 out of 500000 steps (50%)
[03:38:03] Completed 255000 out of 500000 steps (51%)
[04:13:39] Completed 260000 out of 500000 steps (52%)
[04:50:44] Completed 265000 out of 500000 steps (53%)
[05:28:50] Completed 270000 out of 500000 steps (54%)
[05:32:33] - Autosending finished units... [March 31 05:32:33 UTC]
[05:32:33] Trying to send all finished work units
[05:32:33] + No unsent completed units remaining.
[05:32:33] - Autosend completed
[06:07:00] Completed 275000 out of 500000 steps (55%)
[06:43:32] Completed 280000 out of 500000 steps (56%)
[07:17:12] Completed 285000 out of 500000 steps (57%)
[07:50:35] Completed 290000 out of 500000 steps (58%)
[08:24:25] Completed 295000 out of 500000 steps (59%)
[08:59:28] Completed 300000 out of 500000 steps (60%)
[09:36:10] Completed 305000 out of 500000 steps (61%)
[10:13:15] Completed 310000 out of 500000 steps (62%)
[10:50:47] Completed 315000 out of 500000 steps (63%)
[11:28:51] Completed 320000 out of 500000 steps (64%)
[11:32:33] - Autosending finished units... [March 31 11:32:33 UTC]
[11:32:33] Trying to send all finished work units
[11:32:33] + No unsent completed units remaining.
[11:32:33] - Autosend completed
[12:10:21] Completed 325000 out of 500000 steps (65%)
[12:50:43] Completed 330000 out of 500000 steps (66%)
[13:29:11] Completed 335000 out of 500000 steps (67%)
[14:07:02] Completed 340000 out of 500000 steps (68%)
[14:44:49] Completed 345000 out of 500000 steps (69%)
[15:22:50] Completed 350000 out of 500000 steps (70%)
[16:00:50] Completed 355000 out of 500000 steps (71%)
[16:39:08] Completed 360000 out of 500000 steps (72%)
[17:17:11] Completed 365000 out of 500000 steps (73%)
[17:32:33] - Autosending finished units... [March 31 17:32:33 UTC]
[17:32:33] Trying to send all finished work units
[17:32:33] + No unsent completed units remaining.
[17:32:33] - Autosend completed
[17:55:02] Completed 370000 out of 500000 steps (74%)
[18:33:04] Completed 375000 out of 500000 steps (75%)
[19:12:19] Completed 380000 out of 500000 steps (76%)
[19:51:52] Completed 385000 out of 500000 steps (77%)
[20:32:01] Completed 390000 out of 500000 steps (78%)
[21:13:17] Completed 395000 out of 500000 steps (79%)
[21:58:55] Completed 400000 out of 500000 steps (80%)
[22:42:05] Completed 405000 out of 500000 steps (81%)
[23:25:41] Completed 410000 out of 500000 steps (82%)
[23:32:33] - Autosending finished units... [March 31 23:32:33 UTC]
[23:32:33] Trying to send all finished work units
[23:32:33] + No unsent completed units remaining.
[23:32:33] - Autosend completed
[00:09:59] Completed 415000 out of 500000 steps (83%)
[00:54:56] Completed 420000 out of 500000 steps (84%)
[01:15:15] WARNING: Console control signal 5 on PID 4236
[01:15:15] Service ignoring hangup/logoff signal.
[01:15:20] WARNING: Console control signal 5 on PID 4236
[01:15:20] Service ignoring hangup/logoff signal.
[01:15:24] WARNING: Console control signal 6 on PID 4236
[01:15:24] Exiting, please wait. . .

Code: Select all

--- Opening Log file [April 1 01:16:33 UTC] 


# Windows CPU Console Edition #################################################
###############################################################################

                       Folding@Home Client Version 6.23

                          http://folding.stanford.edu

###############################################################################
###############################################################################

Launch directory: C:\Documents and Settings\robert\Mina dokument\F@H6.23
Service: C:\Documents and Settings\robert\Mina dokument\F@H6.23\Folding@home-Win32-x86.exe
Arguments: -svcstart -d C:\Documents and Settings\robert\Mina dokument\F@H6.23 -verbosity9 -forceasm -verbosity 9 -forceasm 

Launched as a service.
Entered C:\Documents and Settings\robert\Mina dokument\F@H6.23 to do work.

Warning:
 By using the -forceasm flag, you are overriding
 safeguards in the program. If you did not intend to
 do this, please restart the program without -forceasm.
 If work units are not completing fully (and particularly
 if your machine is overclocked), then please discontinue
 use of the flag.

[01:16:33] - Ask before connecting: No
[01:16:33] - User name: John_Weatherman (Team 48913)
[01:16:33] - User ID: 1AD525710FE40E68
[01:16:33] - Machine ID: 1
[01:16:33] 
[01:16:33] Loaded queue successfully.
[01:16:33] 
[01:16:33] + Processing work unit
[01:16:33] Core required: FahCore_b4.exe
[01:16:33] Core found.
[01:16:33] - Autosending finished units... [April 1 01:16:33 UTC]
[01:16:33] Trying to send all finished work units
[01:16:33] + No unsent completed units remaining.
[01:16:33] - Autosend completed
[01:16:33] Working on queue slot 02 [April 1 01:16:33 UTC]
[01:16:33] + Working ...
[01:16:33] - Calling '.\FahCore_b4.exe -dir work/ -suffix 02 -checkpoint 10 -service -forceasm -verbose -lifeline 1180 -version 623'

[01:16:46] *********************** Log Started 01/Apr/2010 01:16:46 ***********************
[01:16:46] ************************** ProtoMol Folding@Home Core **************************
[01:16:46]   Version: 23
[01:16:46]      Type: 180
[01:16:46]      Core: ProtoMol
[01:16:46]   Website: http://folding.stanford.edu/
[01:16:46] Copyright: (c) 2009 Stanford University
[01:16:46]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[01:16:46]      Args: -dir work/ -suffix 02 -checkpoint 10 -service -forceasm -verbose
[01:16:46]            -lifeline 1180 -version 623
[01:16:46] ************************************ Build *************************************
[01:16:46]      Date: Mar 22 2010
[01:16:46]      Time: 16:55:15
[01:16:46]  Revision: 1789
[01:16:46]  Compiler: Intel(R) C++ MSVC 1500 mode 1110
[01:16:46]   Options: /TP /nologo /EHsc /wd4297 /wd4103 /wd1786 /arch:IA32 /Ox
[01:16:46]            /QaxSSE2,SSE3,SSSE3,SSE4.1,SSE4.2 /Qrestrict /MT
[01:16:46]   Defines: _CRT_SECURE_NO_WARNINGS NDEBUG HAVE_GEEKINFO BOOST_ALL_NO_LIB
[01:16:46]            XML_STATIC HAVE_EXPAT HAVE_OPENSSL HAVE_LIBFAH HAVE_SIMTK_LAPACK
[01:16:46]  Platform: Windows XP
[01:16:46]      Bits: 32
[01:16:46]      Mode: Release
[01:16:46] ************************************ System ************************************
[01:16:46]        OS: Microsoft Windows XP Home Edition
[01:16:46]       CPU: Intel(R) Atom(TM) CPU N270 @ 1.60GHz
[01:16:46]    CPU ID: GenuineIntel Family 6 Model 28 Stepping 2
[01:16:46]      CPUs: 2 Logical, 1 Physical
[01:16:46]    Memory: 1014 MB
[01:16:46]   Threads: Windows
[01:16:46] ********************************************************************************
[01:16:46] Project: 10006 (Run 4440, Clone 1, Gen 0)
[01:16:46] Digital signatures verified
[01:16:50] ERROR: Guru Meditation #d05b3030bf2d0502.609a54f91252e900 (2765220.2765220) 'work/02/ww.dcd'
[01:16:50] WARNING: Unexpected exit() call
[01:16:50] WARNING: Unexpected exit from science code
[01:16:50] Saving result file logfile_02.txt
[01:16:50] Saving result file checkpt
[01:16:50] Saving result file checkpt.crc
[01:16:50] Saving result file log.txt
[01:17:32] Saving result file protomol.conf
[01:17:32] ERROR: Guru Meditation #d05b3030bf2d0502.609a54f91252e900 (2765220.2765220) 'work/02/ww.dcd'
[01:17:35] CoreStatus = 70 (112)
[01:17:35] + The core could not validate the current work unit for processing.
[01:17:35] Deleting current work unit & continuing...
[01:17:41] Trying to send all finished work units
[01:17:41] + No unsent completed units remaining.
[01:17:41] - Preparing to get new work unit...
[01:17:41] + Attempting to get work packet
[01:17:41] - Will indicate memory of 1013 MB
[01:17:41] - Detect CPU. Vendor: GenuineIntel, Family: 6, Model: 12, Stepping: 2
[01:17:41] - Connecting to assignment server
[01:17:41] Connecting to http://assign.stanford.edu:8080/
[01:17:43] Posted data.
[01:17:43] Initial: 4A81; - Successful: assigned to (129.74.85.48).
[01:17:43] + News From Folding@Home: Welcome to Folding@Home
[01:17:43] Loaded queue successfully.
[01:17:43] Connecting to http://129.74.85.48:8080/
[01:18:07] Posted data.
[01:18:07] Initial: 0000; - Receiving payload (expected size: 38728)
[01:18:26] - Downloaded at ~1 kB/s
[01:18:26] - Averaged speed for that direction ~7 kB/s
[01:18:26] + Received work.
[01:18:26] + Closed connections
[01:18:31] 
[01:18:31] + Processing work unit
[01:18:31] Core required: FahCore_b4.exe
[01:18:31] Core found.
[01:18:31] Working on queue slot 03 [April 1 01:18:31 UTC]
[01:18:31] + Working ...
[01:18:31] - Calling '.\FahCore_b4.exe -dir work/ -suffix 03 -checkpoint 10 -service -forceasm -verbose -lifeline 1180 -version 623'

[01:18:35] *********************** Log Started 01/Apr/2010 01:18:35 ***********************
[01:18:35] ************************** ProtoMol Folding@Home Core **************************
[01:18:35]   Version: 23
[01:18:35]      Type: 180
[01:18:35]      Core: ProtoMol
[01:18:35]   Website: http://folding.stanford.edu/
[01:18:35] Copyright: (c) 2009 Stanford University
[01:18:35]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[01:18:35]      Args: -dir work/ -suffix 03 -checkpoint 10 -service -forceasm -verbose
[01:18:35]            -lifeline 1180 -version 623
[01:18:35] ************************************ Build *************************************
[01:18:35]      Date: Mar 22 2010
[01:18:35]      Time: 16:55:15
[01:18:35]  Revision: 1789
[01:18:35]  Compiler: Intel(R) C++ MSVC 1500 mode 1110
[01:18:35]   Options: /TP /nologo /EHsc /wd4297 /wd4103 /wd1786 /arch:IA32 /Ox
[01:18:35]            /QaxSSE2,SSE3,SSSE3,SSE4.1,SSE4.2 /Qrestrict /MT
[01:18:35]   Defines: _CRT_SECURE_NO_WARNINGS NDEBUG HAVE_GEEKINFO BOOST_ALL_NO_LIB
[01:18:35]            XML_STATIC HAVE_EXPAT HAVE_OPENSSL HAVE_LIBFAH HAVE_SIMTK_LAPACK
[01:18:35]  Platform: Windows XP
[01:18:35]      Bits: 32
[01:18:35]      Mode: Release
[01:18:35] ************************************ System ************************************
[01:18:35]        OS: Microsoft Windows XP Home Edition
[01:18:35]       CPU: Intel(R) Atom(TM) CPU N270 @ 1.60GHz
[01:18:35]    CPU ID: GenuineIntel Family 6 Model 28 Stepping 2
[01:18:35]      CPUs: 2 Logical, 1 Physical
[01:18:35]    Memory: 1014 MB
[01:18:35]   Threads: Windows
[01:18:35] ********************************************************************************
[01:18:36] Project: 10006 (Run 4440, Clone 1, Gen 0)
[01:18:36] Reading tar file par_all27_prot_lipid.inp
[01:18:36] Reading tar file scpismQuartic.inp
[01:18:36] Reading tar file ww_exteq_nowater1.pdb
[01:18:36] Reading tar file ww_exteq_nowater1.psf
[01:18:36] Reading tar file protomol.conf
[01:18:36] Reading tar file core.xml
[01:18:36] Digital signatures verified
[01:18:39] GUI Server started
[01:18:39] Completed 0 out of 500000 steps (0%)
[01:50:45] Completed 5000 out of 500000 steps (1%)
[02:22:47] Completed 10000 out of 500000 steps (2%)
[02:55:04] Completed 15000 out of 500000 steps (3%)

Re: Project: 10006 (Run 4440, Clone 1, Gen 0) Guru Meditation?

Posted: Thu Apr 01, 2010 7:07 am
by bruce
You may be the first person to do a shutdown a FAH service while a ProtoMol WU was running. In fact, ProtoMol seems to do a good job of checkpointing when you use a CTRL-C (console) or a ContextMenu Quit (systray client) but there's a pretty good chance that that combination of events never came up during ProtoMol testing.

The server did not receive a result from you, so the WU will pass the deadline and be reassigned. I have no reason to suspect that there's anything wrong with the WU itself.

Re: Project: 10006 (Run 4440, Clone 1, Gen 0) Guru Meditation?

Posted: Thu Apr 01, 2010 7:59 am
by John_Weatherman
Going from the log it seems just to have deleted the WU and then downloaded it again from 129.74.85.48
So we'll try again.

Re: Project: 10006 (Run 4440, Clone 1, Gen 0) Guru Meditation?

Posted: Thu Apr 01, 2010 9:06 am
by kiore
I received one of these Guru Meditation messages yesterday too, where the client shutdown and deleted itself while I was at work, when I go home today I will search for the log.

Re: Project: 10006 (Run 4440, Clone 1, Gen 0) Guru Meditation?

Posted: Thu Apr 01, 2010 7:49 pm
by jcoffland
Guru Meditation errors mean that the files on disk don't match what the core wrote. There are a number of ways this could happen:

1) Some other software on your system makes a change to one of the core's data files.
2) The core or OS dies without saving all its data to disk. This should not happen if the core is shutdown nicely. I.e. not killed hard.
3) The core is writing to a network disk and the data does not all get written before the system shutsdown. Windows is notoriously bad about network file consistency.

If the core is not shutdown properly we cannot guarantee you will get credit because there is no way to tell the difference from this and someone tampering with the results. In such cases the results are invalid and useless if they are not stored correctly anyway. Faulty hardware or operating systems are not our fault.

However, if the client is having this problem under normal circumstances or normal soft shutdowns then we need to fix this. If you can show me evidence of this I definitely want to see it.

We have done quite a bit of work debugging core stop and restart issues. The ProtoMol core is much stricter about corrupted data where past cores might have just accepted it and moved on.

Just be aware that if the core is shutdown hard then you may loose the points.

Re: Project: 10006 (Run 4440, Clone 1, Gen 0) Guru Meditation?

Posted: Thu Apr 01, 2010 9:28 pm
by Amaruk
This is (or was) Project: 10006 (Run 3241, Clone 9, Gen 0)

Code: Select all

[06:46:42] Thank you for your contribution to Folding@Home.
[06:46:42] + Number of Units Completed: 138

[06:46:46] Trying to send all finished work units
[06:46:46] + No unsent completed units remaining.
[06:46:46] - Preparing to get new work unit...
[06:46:46] + Attempting to get work packet
[06:46:46] - Will indicate memory of 2024 MB
[06:46:46] - Connecting to assignment server
[06:46:46] Connecting to http://assign.stanford.edu:8080/
[06:46:47] Posted data.
[06:46:47] Initial: 4A81; - Successful: assigned to (129.74.85.48).
[06:46:47] + News From Folding@Home: Welcome to Folding@Home
[06:46:47] Loaded queue successfully.
[06:46:47] Connecting to http://129.74.85.48:8080/
[06:46:48] Posted data.
[06:46:48] Initial: 0000; - Receiving payload (expected size: 38689)
[06:46:48] Conversation time very short, giving reduced weight in bandwidth avg
[06:46:48] - Downloaded at ~75 kB/s
[06:46:48] - Averaged speed for that direction ~88 kB/s
[06:46:48] + Received work.
[06:46:48] Trying to send all finished work units
[06:46:48] + No unsent completed units remaining.
[06:46:48] + Closed connections
[06:46:48] 
[06:46:48] + Processing work unit
[06:46:48] Core required: FahCore_b4.exe
[06:46:48] Core found.
[06:46:48] Working on queue slot 04 [April 1 06:46:48 UTC]
[06:46:48] + Working ...
[06:46:48] - Calling '.\FahCore_b4.exe -dir work/ -suffix 04 -checkpoint 15 -verbose -lifeline 26388 -version 623'

[06:46:54] *********************** Log Started 01/Apr/2010 06:46:53 ***********************
[06:46:54] ************************** ProtoMol Folding@Home Core **************************
[06:46:54]   Version: 21
[06:46:54]      Type: 180
[06:46:54]      Core: ProtoMol
[06:46:54]   Website: http://folding.stanford.edu/
[06:46:54] Copyright: (c) 2009 Stanford University
[06:46:54]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[06:46:54]      Args: -dir work/ -suffix 04 -checkpoint 15 -verbose -lifeline 26388
[06:46:54]            -version 623
[06:46:54] ************************************ Build *************************************
[06:46:54]      Date: Dec 24 2009
[06:46:54]      Time: 14:36:31
[06:46:54]  Revision: 1748
[06:46:54]  Compiler: Intel(R) C++ MSVC 1500 mode 1110
[06:46:54]   Options: /TP /nologo /EHsc /wd4297 /wd4103 /wd1786 /arch:IA32 /Ox
[06:46:54]            /QaxSSE2,SSE3,SSSE3,SSE4.1,SSE4.2 /Qrestrict /MT
[06:46:54]  Platform: Windows XP
[06:46:54]      Bits: 32
[06:46:54] ************************************ System ************************************
[06:46:54]        OS: Microsoft(R) Windows(R) XP Professional x64 Edition
[06:46:54]       CPU: AMD Athlon(tm) 64 X2 Dual Core Processor 5200+
[06:46:54]    CPU ID: AuthenticAMD Family 15 Model 107 Stepping 2
[06:46:54]      CPUs: 1 Logical, 1 Physical
[06:46:54]    Memory: 4.00 GB
[06:46:54] ********************************************************************************
[06:46:54] Project: 10006 (Run 3241, Clone 9, Gen 0)
[06:46:54] ERROR: @ fah\core\WorkUnit.cpp:66:<unknown> 110: Need version 22
[06:46:54] Folding@home Core Shutdown: CORE_OUTDATED
[06:46:57] CoreStatus = 6E (110)
[06:46:57] + Core out of date. Auto updating...
[06:46:57] - Attempting to download new core...
[06:46:57] + Downloading new core: FahCore_b4.exe
[06:46:57] Downloading core (/~pande/Win32/x86/Core_b4.fah from www.stanford.edu)
[06:46:57] Initial: AFDE; + 10240 bytes downloaded

<SNIP>

[06:47:01] Initial: C685; + 5169901 bytes downloaded
[06:47:01] Verifying core Core_b4.fah...
[06:47:01] Signature is VALID
[06:47:01] 
[06:47:01] Trying to unzip core FahCore_b4.exe
[06:47:04] Decompressed FahCore_b4.exe (16564224 bytes) successfully
[06:47:09] + Core successfully engaged
[06:47:15] 
[06:47:15] + Processing work unit
[06:47:15] Core required: FahCore_b4.exe
[06:47:15] Core found.
[06:47:15] Working on queue slot 04 [April 1 06:47:15 UTC]
[06:47:15] + Working ...
[06:47:15] - Calling '.\FahCore_b4.exe -dir work/ -suffix 04 -checkpoint 15 -verbose -lifeline 26388 -version 623'

[06:47:20] *********************** Log Started 01/Apr/2010 06:47:20 ***********************
[06:47:20] ************************** ProtoMol Folding@Home Core **************************
[06:47:20]   Version: 23
[06:47:20]      Type: 180
[06:47:20]      Core: ProtoMol
[06:47:20]   Website: http://folding.stanford.edu/
[06:47:20] Copyright: (c) 2009 Stanford University
[06:47:20]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[06:47:20]      Args: -dir work/ -suffix 04 -checkpoint 15 -verbose -lifeline 26388
[06:47:20]            -version 623
[06:47:20] ************************************ Build *************************************
[06:47:20]      Date: Mar 22 2010
[06:47:20]      Time: 16:55:15
[06:47:20]  Revision: 1789
[06:47:20]  Compiler: Intel(R) C++ MSVC 1500 mode 1110
[06:47:20]   Options: /TP /nologo /EHsc /wd4297 /wd4103 /wd1786 /arch:IA32 /Ox
[06:47:20]            /QaxSSE2,SSE3,SSSE3,SSE4.1,SSE4.2 /Qrestrict /MT
[06:47:20]   Defines: _CRT_SECURE_NO_WARNINGS NDEBUG HAVE_GEEKINFO BOOST_ALL_NO_LIB
[06:47:20]            XML_STATIC HAVE_EXPAT HAVE_OPENSSL HAVE_LIBFAH HAVE_SIMTK_LAPACK
[06:47:20]  Platform: Windows XP
[06:47:20]      Bits: 32
[06:47:20]      Mode: Release
[06:47:20] ************************************ System ************************************
[06:47:20]        OS: Microsoft(R) Windows(R) XP Professional x64 Edition
[06:47:20]       CPU: AMD Athlon(tm) 64 X2 Dual Core Processor 5200+
[06:47:20]    CPU ID: AuthenticAMD Family 15 Model 107 Stepping 2
[06:47:20]      CPUs: 1 Logical, 1 Physical
[06:47:20]    Memory: 4.00 GB
[06:47:20]   Threads: Windows
[06:47:20] ********************************************************************************
[06:47:20] Project: 10006 (Run 3241, Clone 9, Gen 0)
[06:47:20] Reading tar file par_all27_prot_lipid.inp
[06:47:20] Reading tar file scpismQuartic.inp
[06:47:20] Reading tar file ww_exteq_nowater1.pdb
[06:47:20] Reading tar file ww_exteq_nowater1.psf
[06:47:20] Reading tar file protomol.conf
[06:47:20] Reading tar file core.xml
[06:47:20] Digital signatures verified
[06:47:21] GUI Server started
[06:47:21] Completed 0 out of 500000 steps (0%)

<SNIP>

[18:49:33] Completed 400000 out of 500000 steps (80%)
[19:01:55] Completed 405000 out of 500000 steps (81%)
[19:14:17] Completed 410000 out of 500000 steps (82%)
[19:26:49] Completed 415000 out of 500000 steps (83%)
[19:40:06] Completed 420000 out of 500000 steps (84%)
[19:53:48] Completed 425000 out of 500000 steps (85%)
[20:06:21] Completed 430000 out of 500000 steps (86%)
[20:18:41] Completed 435000 out of 500000 steps (87%)
[20:30:11] Completed 440000 out of 500000 steps (88%)
[20:35:05] ***** Got a SIGTERM signal (2)
[20:35:05] Killing all core threads

Folding@Home Client Shutdown.
Client is set at default interval of 15 minutes.

At time of shutdown checkpoints are about 13 minutes apart.

Client shutdown (CTRL-C) about 5 minutes after last checkpoint.

Code: Select all

--- Opening Log file [April 1 20:35:46 UTC] 


# Windows CPU Console Edition #################################################
###############################################################################

                       Folding@Home Client Version 6.23

                          http://folding.stanford.edu

###############################################################################
###############################################################################

Launch directory: E:\Folding\WorkingFiles\Uni-1
Executable: D:\Folding\UNI-Con\Folding@home-Win32-x86.exe
Arguments: -verbosity 9 -advmethods 

[20:35:46] - Ask before connecting: No
[20:35:46] - User name: Amaruk (Team 50625)
[20:35:46] - User ID: 6E82445C1C921503
[20:35:46] - Machine ID: 1
[20:35:46] 
[20:35:46] Loaded queue successfully.
[20:35:46] 
[20:35:46] - Autosending finished units... [April 1 20:35:46 UTC]
[20:35:46] + Processing work unit
[20:35:46] Trying to send all finished work units
[20:35:46] Core required: FahCore_b4.exe
[20:35:46] + No unsent completed units remaining.
[20:35:46] Core found.
[20:35:46] - Autosend completed
[20:35:46] Working on queue slot 04 [April 1 20:35:46 UTC]
[20:35:46] + Working ...
[20:35:46] - Calling '.\FahCore_b4.exe -dir work/ -suffix 04 -checkpoint 15 -verbose -lifeline 49324 -version 623'

[20:35:51] *********************** Log Started 01/Apr/2010 20:35:51 ***********************
[20:35:51] ************************** ProtoMol Folding@Home Core **************************
[20:35:51]   Version: 23
[20:35:51]      Type: 180
[20:35:51]      Core: ProtoMol
[20:35:51]   Website: http://folding.stanford.edu/
[20:35:51] Copyright: (c) 2009 Stanford University
[20:35:51]    Author: Joseph Coffland <joseph@cauldrondevelopment.com>
[20:35:51]      Args: -dir work/ -suffix 04 -checkpoint 15 -verbose -lifeline 49324
[20:35:51]            -version 623
[20:35:51] ************************************ Build *************************************
[20:35:51]      Date: Mar 22 2010
[20:35:51]      Time: 16:55:15
[20:35:51]  Revision: 1789
[20:35:51]  Compiler: Intel(R) C++ MSVC 1500 mode 1110
[20:35:51]   Options: /TP /nologo /EHsc /wd4297 /wd4103 /wd1786 /arch:IA32 /Ox
[20:35:51]            /QaxSSE2,SSE3,SSSE3,SSE4.1,SSE4.2 /Qrestrict /MT
[20:35:51]   Defines: _CRT_SECURE_NO_WARNINGS NDEBUG HAVE_GEEKINFO BOOST_ALL_NO_LIB
[20:35:51]            XML_STATIC HAVE_EXPAT HAVE_OPENSSL HAVE_LIBFAH HAVE_SIMTK_LAPACK
[20:35:51]  Platform: Windows XP
[20:35:51]      Bits: 32
[20:35:51]      Mode: Release
[20:35:51] ************************************ System ************************************
[20:35:51]        OS: Microsoft(R) Windows(R) XP Professional x64 Edition
[20:35:51]       CPU: AMD Athlon(tm) 64 X2 Dual Core Processor 5200+
[20:35:51]    CPU ID: AuthenticAMD Family 15 Model 107 Stepping 2
[20:35:51]      CPUs: 2 Logical, 2 Physical
[20:35:51]    Memory: 4.00 GB
[20:35:51]   Threads: Windows
[20:35:51] ********************************************************************************
[20:35:51] Project: 10006 (Run 3241, Clone 9, Gen 0)
[20:35:51] Digital signatures verified
[20:35:51] ERROR: Guru Meditation #feb6167fd70d005d.6030f331c9f05851 (2863500.2863500) 'work/04/ww.dcd'
[20:35:51] WARNING: Unexpected exit() call
[20:35:51] WARNING: Unexpected exit from science code
[20:35:51] Saving result file logfile_04.txt
[20:35:51] Saving result file checkpt
[20:35:51] Saving result file checkpt.crc
[20:35:51] Saving result file log.txt
[20:35:55] Saving result file protomol.conf
[20:35:55] ERROR: Guru Meditation #feb6167fd70d005d.6030f331c9f05851 (2863500.2863500) 'work/04/ww.dcd'
[20:35:59] CoreStatus = 70 (112)
[20:35:59] + The core could not validate the current work unit for processing.
[20:35:59] Deleting current work unit & continuing...
[20:36:07] Trying to send all finished work units
[20:36:07] + No unsent completed units remaining.
[20:36:07] - Preparing to get new work unit...
[20:36:07] + Attempting to get work packet
[20:36:07] - Will indicate memory of 2024 MB
[20:36:07] - Detect CPU. Vendor: AuthenticAMD, Family: 15, Model: 11, Stepping: 2
[20:36:07] - Connecting to assignment server
[20:36:07] Connecting to http://assign.stanford.edu:8080/
[20:36:07] Posted data.
[20:36:07] Initial: E6A9; - Successful: assigned to (169.230.26.30).
[20:36:07] + News From Folding@Home: Welcome to Folding@Home
[20:36:07] Loaded queue successfully.
[20:36:07] Connecting to http://169.230.26.30:8080/
[20:36:08] Posted data.
[20:36:08] Initial: 0000; - Receiving payload (expected size: 22513)
[20:36:08] Conversation time very short, giving reduced weight in bandwidth avg
[20:36:08] - Downloaded at ~43 kB/s
[20:36:08] - Averaged speed for that direction ~83 kB/s
[20:36:08] + Received work.
[20:36:08] + Closed connections
[20:36:13] 
[20:36:13] + Processing work unit
[20:36:13] Core required: FahCore_82.exe
[20:36:13] Core found.
[20:36:13] Working on queue slot 05 [April 1 20:36:13 UTC]
[20:36:13] + Working ...
[20:36:13] - Calling '.\FahCore_82.exe -dir work/ -suffix 05 -checkpoint 15 -verbose -lifeline 49324 -version 623'

[20:36:13] 
[20:36:13] *------------------------------*
[20:36:13] Folding@Home PMD Core
[20:36:13] Version 1.03 (September 7, 2005)
[20:36:13] 
[20:36:13] Preparing to commence simulation
[20:36:13] - Looking at optimizations...
[20:36:13] - Created dyn
[20:36:13] - Files status OK
[20:36:13] - Expanded 22001 -> 138920 (decompressed 631.4 percent)
[20:36:13] 
[20:36:13] Project: 4608 (Run 2, Clone 164, Gen 42)
[20:36:13] 
[20:36:13] Assembly optimizations on if available.
[20:36:13] Entering M.D.
[20:36:19] Protein: p4608_T0_PSBD-16_minout
[20:36:19] 
[20:36:19] Completed 0 out of 2500000 steps  (0%)
[20:45:36] Writing local files
[20:45:36] Completed 25000 out of 2500000 steps  (1%)
[20:51:13] Writing checkpoint files
[20:54:55] Writing local files
[20:54:55] Completed 50000 out of 2500000 steps  (2%)
[20:54:55] Writing checkpoint files
Might be time to say:

Zed, we have a bug.

:wink:

Re: Project: 10006 (Run 4440, Clone 1, Gen 0) Guru Meditation?

Posted: Thu Apr 01, 2010 10:11 pm
by bruce
Amaruk wrote:This is (or was) Project: 10006 (Run 3241, Clone 9, Gen 0)

Client is set at default interval of 15 minutes.

At time of shutdown checkpoints are about 13 minutes apart.

Client shutdown (CTRL-C) about 5 minutes after last checkpoint.

Might be time to say:

Zed, we have a bug.

:wink:
Yes, there's apparently a bug but you didn't tell us what kind of filesystem is involved so it still could be either the FAH code or your OS. Jcoffland mentioned the example of a Windows network disk but that's not the only one. While many popular filesystems will periodically sync data to harddisk (within your "about 5 minutes" timeframe), there are also a number which won't.

Re: Project: 10006 (Run 4440, Clone 1, Gen 0) Guru Meditation?

Posted: Thu Apr 01, 2010 10:21 pm
by 7im
jcoffland wrote:...snip...

Just be aware that if the core is shutdown hard then you may loose the points.
All the more reason for better and multiple checkpoints. ;)

Re: Project: 10006 (Run 4440, Clone 1, Gen 0) Guru Meditation?

Posted: Fri Apr 02, 2010 5:41 am
by Amaruk
Filesystem is NTSF, default for XP Pro x64.


Image



The client is in a folder on D. The working files are on E, with a separate folder for each CPU core.

If any other info would be helpful, feel free to ask.

Re: Project: 10006 (Run 4440, Clone 1, Gen 0) Guru Meditation?

Posted: Fri Apr 02, 2010 1:13 pm
by izaguirr
Hi

I think this might be a bug. We are beta testing version 23 which implements a more robust checkpointing. For reasons of client availability, we have tested it more on linux. It might be that somehow in Windows things are not working out as expected - the checksumming is carried out by the C++ Boost iostream libraries, and there might be a problem related to that. We will look into this. Thanks for pointing it out!

Prof. Jesus A. Izaguirre, Ph.D.
Department of Computer Science and Engineering
Interdisciplinary Center for Network Science and Applications
University of Notre Dame, Indiana
Member, Folding@Home Consortium, Stanford University
All times are UTC
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