FAH Core Interrupted Project 2683(Run 5, Clone 5, Gen 14)
Posted: Wed Jan 20, 2010 7:58 am
Dont know whats going on here, but I finished one work unit and downloaded this one, but it can't even start........
I tried deleting the core and downloading a new one Just to make sure it wasn't corrupted or anything, but no help.
I tried deleting the core and downloading a new one Just to make sure it wasn't corrupted or anything, but no help.
Code: Select all
Note: Please read the license agreement (fah6 -license). Further
use of this software requires that you have read and accepted this agreement.
Using local directory for work files
16 cores detected
--- Opening Log file [January 20 07:35:41 UTC]
# Linux SMP Console Edition ###################################################
###############################################################################
Folding@Home Client Version 6.24R3
http://folding.stanford.edu
###############################################################################
###############################################################################
Launch directory: /media/fah/fah
Executable: ./fah6
Arguments: -bigadv -smp 15 -verbosity 9 -local
[07:35:41] - Ask before connecting: No
[07:35:41] - User name: Karamiekos (Team 36837)
[07:35:41] - User ID: 23E128773C713161
[07:35:41] - Machine ID: 1
[07:35:41]
[07:35:41] Loaded queue successfully.
[07:35:41]
[07:35:41] - Autosending finished units... [January 20 07:35:41 UTC]
[07:35:41] + Processing work unit
[07:35:41] Trying to send all finished work units
[07:35:41] Core required: FahCore_a2.exe
[07:35:41] + No unsent completed units remaining.
[07:35:41] Core found.
[07:35:41] - Autosend completed
[07:35:41] Working on queue slot 06 [January 20 07:35:41 UTC]
[07:35:41] + Working ...
[07:35:41] - Calling './mpiexec -np 15 -host 127.0.0.1 ./FahCore_a2.exe -dir work/ -nice 19 -suffix 06 -priority 96 -checkpoint 22 -verbose -lifeline 6102 -version 624'
[07:35:42]
[07:35:42] *------------------------------*
[07:35:42] Folding@Home Gromacs SMP Core
[07:35:42] Version 2.10 (Sun Aug 30 03:43:28 CEST 2009)
[07:35:42]
[07:35:42] Preparing to commence simulation
[07:35:42] - Ensuring status. Please wait.
[07:35:47] Called DecompressByteArray: compressed_data_size=30234593 data_size=159270593, decompressed_data_size=159270593 diff=0
[07:35:49] - Digital signature verified
[07:35:49]
[07:35:49] Project: 2683 (Run 5, Clone 5, Gen 14)
[07:35:49]
[07:35:49] Assembly optimizations on if available.
[07:35:49] Entering M.D.
[07:35:59] (Run 5, Clone 5, Gen 14)
[07:35:59]
[07:36:00] Entering M.D.
NNODES=15, MYRANK=1, HOSTNAME=new-host-2
NNODES=15, MYRANK=6, HOSTNAME=new-host-2
NNODES=15, MYRANK=7, HOSTNAME=new-host-2
NNODES=15, MYRANK=8, HOSTNAME=new-host-2
NNODES=15, MYRANK=12, HOSTNAME=new-host-2
NNODES=15, MYRANK=13, HOSTNAME=new-host-2
NNODES=15, MYRANK=14, HOSTNAME=new-host-2
NNODES=15, MYRANK=3, HOSTNAME=new-host-2
NNODES=15, MYRANK=4, HOSTNAME=new-host-2
NNODES=15, MYRANK=10, HOSTNAME=new-host-2
NNODES=15, MYRANK=2, HOSTNAME=new-host-2
NNODES=15, MYRANK=11, HOSTNAME=new-host-2
NNODES=15, MYRANK=5, HOSTNAME=new-host-2
NNODES=15, MYRANK=9, HOSTNAME=new-host-2
NNODES=15, MYRANK=0, HOSTNAME=new-host-2
NODEID=0 argc=20
Reading file work/wudata_06.tpr, VERSION 3.3.99_development_20070618 (single precision)
NODEID=2 argc=20
NODEID=3 argc=20
NODEID=4 argc=20
NODEID=6 argc=20
NODEID=7 argc=20
NODEID=8 argc=20
NODEID=10 argc=20
NODEID=12 argc=20
NODEID=13 argc=20
NODEID=14 argc=20
NODEID=5 argc=20
NODEID=11 argc=20
NODEID=9 argc=20
NODEID=1 argc=20
Note: tpx file_version 48, software version 68
Will use 10 particle-particle and 5 PME only nodes
This is a guess, check the performance at the end of the log file
NOTE: The tpr file used for this simulation is in an old format, for less memory usage and possibly more performance create a new tpr file with an up to date version of grompp
Making 2D domain decomposition 5 x 1 x 2
starting mdrun 'SINGLE VESICLE in water'
3750000 steps, 15000.0 ps (continuing from step 3500000, 14000.0 ps).
[07:36:24] Completed 0 out of 250000 steps (0%)
t = 14000.001 ps: Water molecule starting at atom 149430 can not be settled.
Check for bad contacts and/or reduce the timestep.
[07:36:26]
[07:36:26] Folding@home Core Shutdown: INTERRUPTED
application called MPI_Abort(MPI_COMM_WORLD, 102) - process 0
[0]0:Return code = 102
[0]1:Return code = 0, signaled with Segmentation fault
[0]2:Return code = 0, signaled with Segmentation fault
[0]3:Return code = 0, signaled with Quit
[0]4:Return code = 0, signaled with Quit
[0]5:Return code = 0, signaled with Quit
[0]6:Return code = 0, signaled with Quit
[0]7:Return code = 0, signaled with Quit
[0]8:Return code = 0, signaled with Quit
[0]9:Return code = 0, signaled with Quit
[0]10:Return code = 0, signaled with Quit
[0]11:Return code = 0, signaled with Quit
[0]12:Return code = 0, signaled with Quit
[0]13:Return code = 0, signaled with Quit
[0]14:Return code = 0, signaled with Quit
[07:36:41] CoreStatus = 66 (102)
[07:36:41] + Shutdown requested by user. Exiting.***** Got a SIGTERM signal (15)
[07:36:41] Killing all core threads
Folding@Home Client Shutdown.