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Project: 2671 (R3, C91, G120)
Posted: Fri Nov 13, 2009 4:51 pm
by skinnykid63
Code: Select all
[12:16:04] Folding@Home Gromacs SMP Core
[12:16:04] Version 2.10 (Sun Aug 30 03:43:28 CEST 2009)
[12:16:04]
[12:16:04] Preparing to commence simulation
[12:16:04] - Ensuring status. Please wait.
[12:16:05] Called DecompressByteArray: compressed_data_size=4843329 data_size=24004881, decompressed_data_size=24004881 diff=0
[12:16:05] - Digital signature verified
[12:16:05]
[12:16:05] Project: 2671 (Run 3, Clone 91, Gen 120)
[12:16:05]
[12:16:05] Assembly optimizations on if available.
[12:16:05] Entering M.D.
[12:16:16] Run 3, Clone 91, Gen 120)
[12:16:16]
[12:16:16] Entering M.D.
[12:16:40] Completed 0 out of 250000 steps (0%)
[12:16:40]
[12:16:40] Folding@home Core Shutdown: INTERRUPTED
[12:16:44] CoreStatus = 66 (102)
[12:16:44] + Shutdown requested by user. Exiting.***** Got a SIGTERM signal (15)
[12:16:44] Killing all core threads
Folding@Home Client Shutdown.
The fah terminal also says there was a segfault in one of the cores.
Re: Project: 2671 (R3, C91, G120)
Posted: Sat Nov 14, 2009 12:47 am
by BrokenWolf
I just had this fail on one of my folders as well
Code: Select all
NOTE: The tpr file used for this simulation is in an old format, for less memory usage and possibly more performance create a new tpr file with an up to date version of grompp
Making 1D domain decomposition 1 x 1 x 4
starting mdrun '22878 system in water'
30250000 steps, 60500.0 ps (continuing from step 30000000, 60000.0 ps).
t = 60000.003 ps: Water molecule starting at atom 65638 can not be settled.
Check for bad contacts and/or reduce the timestep.
t = 60000.005 ps: Water molecule starting at atom 127297 can not be settled.
Check for bad contacts and/or reduce the timestep.
t = 60000.005 ps: Water molecule starting at atom 42760 can not be settled.
Check for bad contacts and/or reduce the timestep.
[01:30:57] lding@home Core Shutdown: INTERRUPTED
application called MPI_Abort(MPI_COMM_WORLD, 102) - process 0
[0]0:Return code = 102
[0]1:Return code = 0, signaled with Quit
[0]2:Return code = 0, signaled with Quit
[0]3:Return code = 0, signaled with Segmentation fault
[01:31:01] CoreStatus = 66 (102)
[01:31:01] + Shutdown requested by user. Exiting.***** Got a SIGTERM signal (15)
[01:31:01] Killing all core threads
Folding@Home Client Shutdown.
Re: Project: 2671 (R3, C91, G120)
Posted: Sun Nov 15, 2009 3:38 am
by parkut
I got this bad WU also. Crashes immediately on startup.
Re: Project: 2671 (R3, C91, G120)
Posted: Mon Nov 16, 2009 12:03 pm
by shunter
Now downloaded this bad WU 3 times in last 3 days - fails immediately and now having to monitor download on this pc everytime or when I wake up. Happened at 2.00 am today so I lost 6 hours of folding. Please arrange for its removal or correction ASAP.
Many thanks
Shunter
Re: Project: 2671 (R3, C91, G120)
Posted: Mon Nov 16, 2009 1:16 pm
by parkut
This is an unusually stubborn WU. I've had it assigned and re-assigned on several different machines, sometimes at the same time!
(It's still bad)
Project: 2671 (Run 3, Clone 91, Gen 120)
Posted: Tue Nov 17, 2009 2:41 am
by BrokenWolf
I got this one on_3_ of my folding systems. This is at least the second time I have reported this WU. Can we please do something about this work unit?
Code: Select all
Making 1D domain decomposition 1 x 1 x 4
starting mdrun '22878 system in water'
30250000 steps, 60500.0 ps (continuing from step 30000000, 60000.0 ps).
t = 60000.003 ps: Water molecule starting at atom 65638 can not be settled.
Check for bad contacts and/or reduce the timestep.
t = 60000.005 ps: Water molecule starting at atom 42760 can not be settled.
Check for bad contacts and/or reduce the timestep.
t = 60000.005 ps: Water molecule starting at atom 127297 can not be settled.
Check for bad contacts and/or reduce the timestep.
[01:45:07] lding@home Core Shutdown: INTERRUPTED
application called MPI_Abort(MPI_COMM_WORLD, 102) - process 0
Please kill this WU.
Thanks, BW