Project: 2669 (Run 14, Clone 166, Gen 38)
Posted: Wed Jul 08, 2009 4:47 am
wouldn't even start:
Code: Select all
[03:42:01] + Processing work unit
[03:42:01] At least 4 processors must be requested; read 1.
[03:42:01] Core required: FahCore_a2.exe
[03:42:01] Core found.
[03:42:01] - Using generic ./mpiexec
[03:42:01] Working on queue slot 03 [July 2 03:42:01 UTC]
[03:42:01] + Working ...
[03:42:01] - Calling './mpiexec -np 4 -host 127.0.0.1 ./FahCore_a2.exe -dir work/ -suffix 03 -checkpoint 20 -verbose -lifeline 881 -version 624'
[03:42:01]
[03:42:01] *------------------------------*
[03:42:01] Folding@Home Gromacs SMP Core
[03:42:01] Version 2.07 (Sun Apr 19 14:29:51 PDT 2009)
[03:42:01]
[03:42:01] Preparing to commence simulation
[03:42:01] - Ensuring status. Please wait.
[03:42:01] Files status OK
[03:42:03] - Expanded 4831120 -> 23973957 (decompressed 496.2 percent)
[03:42:03] Called DecompressByteArray: compressed_data_size=4831120 data_size=23973957, decompressed_data_size=23973957 diff=0
[03:42:04] - Digital signature verified
[03:42:04]
[03:42:04] Project: 2669 (Run 14, Clone 166, Gen 38)
[03:42:04]
[03:42:04] Assembly optimizations on if available.
[03:42:04] Entering M.D.
[03:42:13] un 14, Clone 166, Gen 38)
[03:42:13]
[03:42:14] Entering M.D.
NNODES=4, MYRANK=0, HOSTNAME=FrontRow.local
NNODES=4, MYRANK=1, HOSTNAME=FrontRow.local
NNODES=4, MYRANK=2, HOSTNAME=FrontRow.local
NNODES=4, MYRANK=3, HOSTNAME=FrontRow.local
NODEID=0 argc=20
NODEID=2 argc=20
NODEID=3 argc=20
NODEID=1 argc=20
:-) G R O M A C S (-:
Groningen Machine for Chemical Simulation
:-) VERSION 4.0.99_development_20090307 (-:
Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2008, The GROMACS development team,
check out http://www.gromacs.org for more information.
:-) mdrun (-:
Reading file work/wudata_03.tpr, VERSION 3.3.99_development_20070618 (single precision)
Note: tpx file_version 48, software version 64
NOTE: The tpr file used for this simulation is in an old format, for less memory usage and possibly more performance create a new tpr file with an up to date version of grompp
Making 1D domain decomposition 1 x 1 x 4
starting mdrun '22848 system'
9750001 steps, 19500.0 ps (continuing from step 9250002, 18500.0 ps).
[03:42:25] Completed 0 out of 499999 steps (0%)
t = 18500.005 ps: Water molecule starting at atom 135034 can not be settled.
Check for bad contacts and/or reduce the timestep.
t = 18500.005 ps: Water molecule starting at atom 137209 can not be settled.
Check for bad contacts and/or reduce the timestep.
t = 18500.007 ps: Water molecule starting at atom 135034 can not be settled.
Check for bad contacts and/or reduce the timestep.
t = 18500.007 ps: Water molecule starting at atom 137209 can not be settled.
Check for bad contacts and/or reduce the timestep.
t = 18500.009 ps: Water molecule starting at atom 101140 can not be settled.
Check for bad contacts and/or reduce the timestep.
t = 18500.009 ps: Water molecule starting at atom 110524 can not be settled.
Check for bad contacts and/or reduce the timestep.
t = 18500.009 ps: Water molecule starting at atom 45346 can not be settled.
Check for bad contacts and/or reduce the timestep.
[03:42:27]
[03:42:27] Folding@home Core Shutdown: INTERRUPTED
[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 102) - process 0
[0]0:Return code = 102
[0]1:Return code = 0, signaled with Quit
[0]2:Return code = 0, signaled with Segmentation fault
[0]3:Return code = 0, signaled with Quit
[03:42:31] CoreStatus = 66 (102)
[03:42:31] + Shutdown requested by user. Exiting.***** Got a SIGTERM signal (15)
[03:42:31] Killing all core threads
Folding@Home Client Shutdown.
... I guess you can trash it.