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Re: covid moonshot bad wu setup
Posted: Wed Sep 16, 2020 8:38 am
by markdotgooley
JohnChodera wrote:> In the past few days I’ve been getting some Moonshot WUs that take over 4 hours to complete on either of my GPUs (one RTX 2060, one RTX 2060 KO, no overclocking) — an hour or more longer than what was usual earlier. I’ll take that as a sign that WUs can and will be adjusted for the new GPUs due to be available in the next few months.
Can you let us know which PRCGs these were? I think they're likely part of the 1343x series, where we are simulating the X-ray structures collected by DiamondMX for the COVID Moonshot:
http://postera.ai/covid.
And yes, you may be right about that and some other coming good things.
~ John Chodera // MSKCC
A 13433 took about 4:45 and a current 13437 is estimated to take about 7 hours. Definitely longer times than I’m used to. (Too lazy to check the logs closely.) No big deal for me, just different.
Re: covid moonshot bad wu setup
Posted: Wed Sep 16, 2020 10:02 am
by Neil-B
@markdotgooley John is asking for the PRCG - the Project, Run, Clone, Gen - this can be got from the logs, the advanced/web control interfaces ... When reporting issues giving the PRCG allows the troubleshooting to be narrowed down to a specific WU that can be investigated and this really helps
Re: covid moonshot bad wu setup
Posted: Wed Sep 16, 2020 1:23 pm
by markdotgooley
The 13437 is (140, 8, 1) and the 13433 is (5, 4, 7). I wouldn’t say that anything is wrong with either, just they take longer than what I’m used to.
Re: covid moonshot bad wu setup
Posted: Wed Sep 16, 2020 5:25 pm
by Neil-B
The base points is actually lower for 13437 than 13433 so logically it should be a little bit quicker ... with these PRCGs someone will be able to see if anything obviously odd is going on.
Re: covid moonshot bad wu setup
Posted: Wed Sep 16, 2020 6:07 pm
by JohnChodera
> The base points is actually lower for 13437 than 13433 so logically it should be a little bit quicker ... with these PRCGs someone will be able to see if anything obviously odd is going on.
Whoa, that may be a mistake. Looking into this.
Re: covid moonshot bad wu setup
Posted: Wed Sep 16, 2020 6:08 pm
by JohnChodera
I'm showing the stats credit for 13433 (SARS-CoV-2 Mpro monomer) is 70660, and for 13737 (Mpro dimer) is 118000. Are you seeing the base credit is _lower_ for 13437 than 13433?
Re: covid moonshot bad wu setup
Posted: Wed Sep 16, 2020 7:39 pm
by Neil-B
D'OH ... MY REALLY BAD ... Homer moment to end all moments ... read the wrong column
... please ignore my previous totally wrong post as looked at the atoms not the base credit !!
Re: covid moonshot bad wu setup
Posted: Thu Sep 17, 2020 6:58 am
by bruce
Assignments take a varying amount of time, but they're not limited to "what you are used to" I've gotten projects that take several days, and you may, too.