Community driven support forum for Folding@home
https://foldingforum.org/
Code: Select all
[18:15:39] Thank you for your contribution to Folding@Home.
[18:15:39] + Number of Units Completed: 293
[18:15:41] - Preparing to get new work unit...
[18:15:41] Cleaning up work directory
[18:15:41] + Attempting to get work packet
[18:15:41] - Connecting to assignment server
[18:15:44] - Successful: assigned to (171.67.108.24).
[18:15:44] + News From Folding@Home: Welcome to Folding@Home
[18:15:45] Loaded queue successfully.
[18:15:56] + Closed connections
[18:15:56]
[18:15:56] + Processing work unit
[18:15:56] At least 4 processors must be requested; read 1.
[18:15:56] Core required: FahCore_a2.exe
[18:15:56] Core found.
[18:15:56] Working on queue slot 02 [September 1 18:15:56 UTC]
[18:15:56] + Working ...
[18:15:56]
[18:15:56] *------------------------------*
[18:15:56] Folding@Home Gromacs SMP Core
[18:15:56] Version 2.07 (Sun Apr 19 14:51:09 PDT 2009)
[18:15:56]
[18:15:56] Preparing to commence simulation
[18:15:56] - Ensuring status. Please wait.
[18:15:56] Called DecompressByteArray: compressed_data_size=1506342 data_size=24008597, decompressed_data_size=24008597 diff=0
[18:15:56] - Digital signature verified
[18:15:56]
[18:15:56] Project: 2671 (Run 52, Clone 43, Gen 82)
[18:15:56]
[18:15:56] Assembly optimizations on if available.
[18:15:56] Entering M.D.
[18:16:06] Run 52, Clone 43, Gen 82)
[18:16:06]
[18:16:06] Entering M.D.
NNODES=4, MYRANK=2, HOSTNAME=Apollo-Quad-Office
NNODES=4, MYRANK=3, HOSTNAME=Apollo-Quad-Office
NNODES=4, MYRANK=1, HOSTNAME=Apollo-Quad-Office
NNODES=4, MYRANK=0, HOSTNAME=Apollo-Quad-Office
NODEID=2 argc=20
NODEID=3 argc=20
NODEID=0 argc=20
:-) G R O M A C S (-:
Groningen Machine for Chemical Simulation
:-) VERSION 4.0.99_development_20090307 (-:
Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2008, The GROMACS development team,
check out http://www.gromacs.org for more information.
:-) mdrun (-:
Reading file work/wudata_02.tpr, VERSION 3.3.99_development_20070618 (single precision)
NODEID=1 argc=20
Note: tpx file_version 48, software version 64
NOTE: The tpr file used for this simulation is in an old format, for less memory usage and possibly more performance create a new tpr file with an up to date version of grompp
Making 1D domain decomposition 1 x 1 x 4
starting mdrun '22887 system in water'
20750000 steps, 41500.0 ps (continuing from step 20500000, 41000.0 ps).
-------------------------------------------------------
Program mdrun, VERSION 4.0.99_development_20090307
Source code file: nsgrid.c, line: 357
Range checking error:
Explanation: During neighborsearching, we assign each particle to a grid
based on its coordinates. If your system contains collisions or parameter
errors that give particles very high velocities you might end up with some
coordinates being +-Infinity or NaN (not-a-number). Obviously, we cannot
put these on a grid, so this is usually where we detect those errors.
Make sure your system is properly energy-minimized and that the potential
energy seems reasonable before trying again.
Variable ci has value -2147483269. It should have been within [ 0 .. 9464 ]
For more information and tips for trouble shooting please check the GROMACS Wiki at
http://wiki.gromacs.org/index.php/Errors
-------------------------------------------------------
Thanx for Using GROMACS - Have a Nice Day
Error on node 0, will try to stop all the nodes
Halting parallel program mdrun on CPU 0 out of 4
gcq#0: Thanx for Using GROMACS - Have a Nice Day
[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, -1) - process 0
-------------------------------------------------------
Program mdrun, VERSION 4.0.99_development_20090307
Source code file: nsgrid.c, line: 357
Range checking error:
Explanation: During neighborsearching, we assign each particle to a grid
based on its coordinates. If your system contains collisions or parameter
errors that give particles very high velocities you might end up with some
coordinates being +-Infinity or NaN (not-a-number). Obviously, we cannot
put these on a grid, so this is usually where we detect those errors.
Make sure your system is properly energy-minimized and that the potential
energy seems reasonable before trying again.
Variable ci has value -2147483611. It should have been within [ 0 .. 256 ]
For more information and tips for trouble shooting please check the GROMACS Wiki at
http://wiki.gromacs.org/index.php/Errors
-------------------------------------------------------
Thanx for Using GROMACS - Have a Nice Day
Error on node 3, will try to stop all the nodes
Halting parallel program mdrun on CPU 3 out of 4
gcq#0: Thanx for Using GROMACS - Have a Nice Day
[cli_3]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, -1) - process 3
[0]0:Return code = 255
[0]1:Return code = 0, signaled with Quit
[0]2:Return code = 0, signaled with Quit
[0]3:Return code = 255
[18:16:18] CoreStatus = FF (255)
[18:16:18] Sending work to server
[18:16:18] Project: 2671 (Run 52, Clone 43, Gen 82)
[18:16:18] - Error: Could not get length of results file work/wuresults_02.dat
[18:16:18] - Error: Could not read unit 02 file. Removing from queue.
[18:16:18] - Preparing to get new work unit...
[18:16:18] Cleaning up work directory
[18:16:18] + Attempting to get work packet
[18:16:18] - Connecting to assignment server
[18:16:22] - Successful: assigned to (171.67.108.24).
[18:16:22] + News From Folding@Home: Welcome to Folding@Home
[18:16:22] Loaded queue successfully.
[18:16:34] + Closed connections
[18:16:39]
[18:16:39] + Processing work unit
[18:16:39] At least 4 processors must be requested; read 1.
[18:16:39] Core required: FahCore_a2.exe
[18:16:39] Core found.
[18:16:39] Working on queue slot 03 [September 1 18:16:39 UTC]
[18:16:39] + Working ...
[18:16:39]
[18:16:39] *------------------------------*
[18:16:39] Folding@Home Gromacs SMP Core
[18:16:39] Version 2.07 (Sun Apr 19 14:51:09 PDT 2009)
[18:16:39]
[18:16:39] Preparing to commence simulation
[18:16:39] - Ensuring status. Please wait.
[18:16:48] - Looking at optimizations...
[18:16:48] - Working with standard loops on this execution.
[18:16:48] - Files status OK
[18:16:49] - Expanded 1506342 -> 24008597 (decompressed 1593.8 percent)
[18:16:49] Called DecompressByteArray: compressed_data_size=1506342 data_size=24008597, decompressed_data_size=24008597 diff=0
[18:16:49] - Digital signature verified
[18:16:49]
[18:16:49] Project: 2671 (Run 52, Clone 43, Gen 82)
[18:16:49]
[18:16:49] Entering M.D.
NNODES=4, MYRANK=1, HOSTNAME=Apollo-Quad-Office
NNODES=4, MYRANK=2, HOSTNAME=Apollo-Quad-Office
NNODES=4, MYRANK=3, HOSTNAME=Apollo-Quad-Office
NNODES=4, MYRANK=0, HOSTNAME=Apollo-Quad-Office
NODEID=0 argc=20
:-) G R O M A C S (-:
Groningen Machine for Chemical Simulation
:-) VERSION 4.0.99_development_20090307 (-:
Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2008, The GROMACS development team,
check out http://www.gromacs.org for more information.
:-) mdrun (-:
Reading file work/wudata_03.tpr, VERSION 3.3.99_development_20070618 (single precision)
NODEID=2 argc=20
NODEID=3 argc=20
NODEID=1 argc=20
Note: tpx file_version 48, software version 64
NOTE: The tpr file used for this simulation is in an old format, for less memory usage and possibly more performance create a new tpr file with an up to date version of grompp
Making 1D domain decomposition 1 x 1 x 4
starting mdrun '22887 system in water'
20750000 steps, 41500.0 ps (continuing from step 20500000, 41000.0 ps).
-------------------------------------------------------
Program mdrun, VERSION 4.0.99_development_20090307
Source code file: nsgrid.c, line: 357
Range checking error:
Explanation: During neighborsearching, we assign each particle to a grid
based on its coordinates. If your system contains collisions or parameter
errors that give particles very high velocities you might end up with some
coordinates being +-Infinity or NaN (not-a-number). Obviously, we cannot
put these on a grid, so this is usually where we detect those errors.
Make sure your system is properly energy-minimized and that the potential
energy seems reasonable before trying again.
Variable ci has value -2147483611. It should have been within [ 0 .. 256 ]
For more information and tips for trouble shooting please check the GROMACS Wiki at
http://wiki.gromacs.org/index.php/Errors
-------------------------------------------------------
Thanx for Using GROMACS - Have a Nice Day
-------------------------------------------------------
Program mdrun, VERSION 4.0.99_development_20090307
Source code file: nsgrid.c, line: 357
Range checking error:
Explanation: During neighborsearching, we assign each particle to a grid
based on its coordinates. If your system contains collisions or parameter
errors that give particles very high velocities you might end up with some
coordinates being +-Infinity or NaN (not-a-number). Obviously, we cannot
put these on a grid, so this is usually where we detect those errors.
Make sure your system is properly energy-minimized and that the potential
energy seems reasonable before trying again.
Variable ci has value -2147483269. It should have been within [ 0 .. 9464 ]
For more information and tips for trouble shooting please check the GROMACS Wiki at
http://wiki.gromacs.org/index.php/Errors
-------------------------------------------------------
Thanx for Using GROMACS - Have a Nice Day
Error on node 3, will try to stop all the nodes
Halting parallel program mdrun on CPU 3 out of 4
Error on node 0, will try to stop all the nodes
Halting parallel program mdrun on CPU 0 out of 4
gcq#0: Thanx for Using GROMACS - Have a Nice Day
[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, -1) - process 0
gcq#0: Thanx for Using GROMACS - Have a Nice Day
[cli_3]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, -1) - process 3
Code: Select all
--- Opening Log file [August 29 16:14:21]
# SMP Client ##################################################################
###############################################################################
Folding@Home Client Version 6.02
http://folding.stanford.edu
###############################################################################
###############################################################################
Launch directory: /etc/folding/1
Executable: ./fah6
Arguments: -local -forceasm -smp 2
Warning:
By using the -forceasm flag, you are overriding
safeguards in the program. If you did not intend to
do this, please restart the program without -forceasm.
If work units are not completing fully (and particularly
if your machine is overclocked), then please discontinue
use of the flag.
[16:14:21] - Ask before connecting: No
[16:14:21] - User name: geokilla (Team 38296)
[16:14:21] - User ID: 1F0664FF1ECA36E1
[16:14:21] - Machine ID: 1
[16:14:21]
[16:14:21] Loaded queue successfully.
[16:14:21]
[16:14:21] + Processing work unit
[16:14:21] At least 4 processors must be requested.Core required: FahCore_a2.exe
[16:14:21] Core not found.
[16:14:21] - Core is not present or corrupted.
[16:14:21] - Attempting to download new core...
[16:14:21] + Downloading new core: FahCore_a2.exe
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[16:14:24] Verifying core Core_a2.fah...
[16:14:24] Signature is VALID
[16:14:24]
[16:14:24] Trying to unzip core FahCore_a2.exe
[16:14:24] Decompressed FahCore_a2.exe (4382312 bytes) successfully
[16:14:24] + Core successfully engaged
[16:14:29]
[16:14:29] + Processing work unit
[16:14:29] At least 4 processors must be requested.Core required: FahCore_a2.exe
[16:14:29] Core found.
[16:14:29] Working on Unit 02 [August 29 16:14:29]
[16:14:29] + Working ...
[16:14:29]
[16:14:29] *------------------------------*
[16:14:29] Folding@Home Gromacs SMP Core
[16:14:29] Version 2.08 (Mon May 18 14:47:42 PDT 2009)
[16:14:29]
[16:14:29] Preparing to commence simulation
[16:14:29] - Ensuring status. Please wait.
[16:14:39] - Assembly optimizations manually forced on.
[16:14:39] - Not checking prior termination.
[16:14:42] - Expanded 1501263 -> 24031357 (decompressed 1600.7 percent)
[16:14:44] Called DecompressByteArray: compressed_data_size=1501263 data_size=24031357, decompressed_data_size=24031357 diff=0
[16:14:45] - Digital signature verified
[16:14:45]
[16:14:45] Project: 2677 (Run 19, Clone 34, Gen 26)
[16:14:45]
[16:14:46] Assembly optimizations on if available.
[16:14:46] Entering M.D.
[16:14:52] Using Gromacs checkpoints
[16:14:56] Multi-core optimizations on
[16:15:02] Resuming from checkpoint
[16:15:03] Verified work/wudata_02.log
[16:15:03] Verified work/wudata_02.trr
[16:15:03] Verified work/wudata_02.xtc
[16:15:03] Verified work/wudata_02.edr
[16:15:34] Completed 20010 out of 250000 steps (8%)
[18:34:39] Completed 22500 out of 250000 steps (9%)
[20:46:13] Completed 25000 out of 250000 steps (10%)