Code: Select all
Note: Please read the license agreement (fah6 -license). Further
use of this software requires that you have read and accepted this agreement.
8 cores detected
--- Opening Log file [June 9 00:57:41 UTC]
# Linux SMP Console Edition ###################################################
###############################################################################
Folding@Home Client Version 6.34
http://folding.stanford.edu
###############################################################################
###############################################################################
Launch directory: /home/wisp/fah
Executable: ./fah6
Arguments: -smp 8 -bigadv
[00:57:41] - Ask before connecting: No
[00:57:41] - User name: leroyxx (Team 24)
[00:57:41] - User ID: 5522FC442C8CD81A
[00:57:41] - Machine ID: 1
[00:57:41]
[00:57:41] Loaded queue successfully.
[00:57:41]
[00:57:41] + Processing work unit
[00:57:41] Core required: FahCore_a5.exe
[June7:41] Core found.
[00:57:41] Working on queue slot 04 [June 9 00:57:41 UTC]
[00:57:41] + Working ...
[00:57:41]
[00:57:41] *------------------------------*
[00:57:41] Folding@Home Gromacs SMP Core
[00:57:41] Version 2.27 (Thu Feb 10 09:46:40 PST 2011)
[00:57:41]
[00:57:41] Preparing to commence simulation
[00:57:41] - Looking at optimizations...
[00:57:41] - Files status OK
[00:57:43] - Expanded 24864639 -> 30796292 (decompressed 123.8 percent)
[00:57:43] Called DecompressByteArray: compressed_data_size=24864639 data_size=30796292, decompressed_data_size=30796292 diff=0
[00:57:43] - Digital signature verified
[00:57:43]
[00:57:43] Project: 6900 (Run 34, Clone 2, Gen 2)
[00:57:43]
[00:57:43] Assembly optimizations on if available.
[00:57:43] Entering M.D.
[00:57:49] Using Gromacs checkpoints
:-) G R O M A C S (-:
Groningen Machine for Chemical Simulation
:-) VERSION 4.5.3 (-:
Written by Emile Apol, Rossen Apostolov, Herman J.C. Berendsen,
Aldert van Buuren, Pär Bjelkmar, Rudi van Drunen, Anton Feenstra,
Gerrit Groenhof, Peter Kasson, Per Larsson, Pieter Meulenhoff,
Teemu Murtola, Szilard Pall, Sander Pronk, Roland Schulz,
Michael Shirts, Alfons Sijbers, Peter Tieleman,
Berk Hess, David van der Spoel, and Erik Lindahl.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2010, The GROMACS development team at
Uppsala University & The Royal Institute of Technology, Sweden.
check out http://www.gromacs.org for more information.
:-) Gromacs (-:
[00:57:50] Mapping NT from 8 to 8
Reading file work/wudata_04.tpr, VERSION 4.0.99_development_20090605 (single precision)
Note: tpx file_version 70, software version 73
Starting 8 threads
Reading checkpoint file work/wudata_04.cpt generated: Thu Jun 9 09:39:55 2011
Making 1D domain decomposition 8 x 1 x 1
starting mdrun 'SINGLE VESICLE in water'
750000 steps, 3000.0 ps (continuing from step 649190, 2596.8 ps).
[00:57:54] Resuming from checkpoint
[00:57:55] Verified work/wudata_04.log
[00:57:55] Verified work/wudata_04.trr
[00:57:56] Verified work/wudata_04.xtc
[00:57:56] Verified work/wudata_04.edr
[00:57:56] Completed 149190 out of 250000 steps (59%)
[01:04:57] Completed 150000 out of 250000 steps (60%)
[01:26:56] Completed 152500 out of 250000 steps (61%)
[01:48:53] Completed 155000 out of 250000 steps (62%)
[02:10:47] Completed 157500 out of 250000 steps (63%)
[02:33:25] Completed 160000 out of 250000 steps (64%)
[02:54:58] Completed 162500 out of 250000 steps (65%)
[03:16:26] Completed 165000 out of 250000 steps (66%)
[03:37:55] Completed 167500 out of 250000 steps (67%)
[03:59:23] Completed 170000 out of 250000 steps (68%)
[04:20:50] Completed 172500 out of 250000 steps (69%)
[04:42:17] Completed 175000 out of 250000 steps (70%)
[05:03:46] Completed 177500 out of 250000 steps (71%)
[05:25:14] Completed 180000 out of 250000 steps (72%)
[05:46:42] Completed 182500 out of 250000 steps (73%)
[06:08:09] Completed 185000 out of 250000 steps (74%)
[06:29:37] Completed 187500 out of 250000 steps (75%)
[06:51:04] Completed 190000 out of 250000 steps (76%)
[07:12:33] Completed 192500 out of 250000 steps (77%)
[07:34:02] Completed 195000 out of 250000 steps (78%)
[07:55:30] Completed 197500 out of 250000 steps (79%)
[08:17:00] Completed 200000 out of 250000 steps (80%)
[08:38:29] Completed 202500 out of 250000 steps (81%)
[09:00:05] Completed 205000 out of 250000 steps (82%)
[09:21:35] Completed 207500 out of 250000 steps (83%)
[09:43:13] Completed 210000 out of 250000 steps (84%)
[10:04:52] Completed 212500 out of 250000 steps (85%)
[10:26:23] Completed 215000 out of 250000 steps (86%)
[10:47:55] Completed 217500 out of 250000 steps (87%)
[11:09:26] Completed 220000 out of 250000 steps (88%)
[11:30:56] Completed 222500 out of 250000 steps (89%)
[11:52:48] Completed 225000 out of 250000 steps (90%)
[12:15:55] Completed 227500 out of 250000 steps (91%)
[12:37:31] Completed 230000 out of 250000 steps (92%)
[12:59:01] Completed 232500 out of 250000 steps (93%)
[13:20:33] Completed 235000 out of 250000 steps (94%)
[13:42:08] Completed 237500 out of 250000 steps (95%)
[14:03:45] Completed 240000 out of 250000 steps (96%)
[14:25:38] Completed 242500 out of 250000 steps (97%)
[14:47:42] Completed 245000 out of 250000 steps (98%)
[15:09:42] Completed 247500 out of 250000 steps (99%)
[15:31:27] Completed 250000 out of 250000 steps (100%)
Writing final coordinates.
Average load imbalance: 6.2 %
Part of the total run time spent waiting due to load imbalance: 2.9 %
Parallel run - timing based on wallclock.
NODE (s) Real (s) (%)
Time: 52419.004 52419.004 100.0
14h33:39
(Mnbf/s) (GFlops) (ns/day) (hour/ns)
Performance: 701.798 37.321 0.665 36.109
Thanx for Using GROMACS - Have a Nice Day
[15:31:32] DynamicWrapper: Finished Work Unit: sleep=10000
[15:31:42]
[15:31:42] Finished Work Unit:
[15:31:42] - Reading up to 52713120 from "work/wudata_04.trr": Read 52713120
[15:31:43] trr file hash check passed.
[15:31:43] - Reading up to 47104504 from "work/wudata_04.xtc": Read 47104504
[15:31:44] xtc file hash check passed.
[15:31:44] edr file hash check passed.
[15:31:44] logfile size: 195412
[15:31:44] Leaving Run
[15:31:44] - Writing 100182984 bytes of core data to disk...
[15:31:45] ... Done.
[15:31:47] - Shutting down core
[15:31:47]
[15:31:47] Folding@home Core Shutdown: FINISHED_UNIT
[15:31:48] CoreStatus = 64 (100)
[15:31:48] Sending work to server
[15:31:48] Project: 6900 (Run 34, Clone 2, Gen 2)
[15:31:48] + Attempting to send results [June 9 15:31:48 UTC]
[15:53:34] + Results successfully sent
[15:53:34] Thank you for your contribution to Folding@Home.
[15:53:34] + Number of Units Completed: 16
[15:53:34] - Preparing to get new work unit...
[15:53:34] Cleaning up work directory
[15:53:34] + Attempting to get work packet
[15:53:34] Passkey found
[15:53:34] - Connecting to assignment server
[15:53:36] - Successful: assigned to (130.237.232.141).
[15:53:36] + News From Folding@Home: Welcome to Folding@Home
[15:53:36] Loaded queue successfully.
[15:59:21] + Closed connections
[15:59:21]
[15:59:21] + Processing work unit
[15:59:21] Core required: FahCore_a5.exe
[15:59:21] Core found.
[15:59:21] Working on queue slot 05 [June 9 15:59:21 UTC]
[15:59:21] + Working ...
[15:59:21]
[15:59:21] *------------------------------*
[15:59:21] Folding@Home Gromacs SMP Core
[15:59:21] Version 2.27 (Thu Feb 10 09:46:40 PST 2011)
[15:59:21]
[15:59:21] Preparing to commence simulation
[15:59:21] - Looking at optimizations...
[15:59:21] - Created dyn
[15:59:21] - Files status OK
[15:59:23] - Expanded 24866033 -> 30796292 (decompressed 123.8 percent)
[15:59:23] Called DecompressByteArray: compressed_data_size=24866033 data_size=30796292, decompressed_data_size=30796292 diff=0
[15:59:23] - Digital signature verified
[15:59:23]
[15:59:23] Project: 6900 (Run 34, Clone 2, Gen 3)
[15:59:23]
[15:59:23] Assembly optimizations on if available.
[15:59:23] Entering M.D.
:-) G R O M A C S (-:
Groningen Machine for Chemical Simulation
:-) VERSION 4.5.3 (-:
Written by Emile Apol, Rossen Apostolov, Herman J.C. Berendsen,
Aldert van Buuren, Pär Bjelkmar, Rudi van Drunen, Anton Feenstra,
Gerrit Groenhof, Peter Kasson, Per Larsson, Pieter Meulenhoff,
Teemu Murtola, Szilard Pall, Sander Pronk, Roland Schulz,
Michael Shirts, Alfons Sijbers, Peter Tieleman,
Berk Hess, David van der Spoel, and Erik Lindahl.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2010, The GROMACS development team at
Uppsala University & The Royal Institute of Technology, Sweden.
check out http://www.gromacs.org for more information.
:-) Gromacs (-:
Reading file work/wudata_05.tpr, VERSION 4.0.99_development_20090605 (single precision)
[15:59:29] Mapping NT from 8 to 8
Note: tpx file_version 70, software version 73
Starting 8 threads
Making 1D domain decomposition 8 x 1 x 1
starting mdrun 'SINGLE VESICLE in water'
1000000 steps, 4000.0 ps (continuing from step 750000, 3000.0 ps).
[15:59:31] Completed 0 out of 250000 steps (0%)
[16:21:09] Completed 2500 out of 250000 steps (1%)
[16:42:48] Completed 5000 out of 250000 steps (2%)
[17:04:30] Completed 7500 out of 250000 steps (3%)
[17:26:02] Completed 10000 out of 250000 steps (4%)
[17:47:31] Completed 12500 out of 250000 steps (5%)
[18:09:01] Completed 15000 out of 250000 steps (6%)
[18:30:31] Completed 17500 out of 250000 steps (7%)
[18:52:00] Completed 20000 out of 250000 steps (8%)
[19:13:29] Completed 22500 out of 250000 steps (9%)
[19:35:00] Completed 25000 out of 250000 steps (10%)
[19:56:29] Completed 27500 out of 250000 steps (11%)
[20:18:00] Completed 30000 out of 250000 steps (12%)
[20:39:31] Completed 32500 out of 250000 steps (13%)
[21:01:01] Completed 35000 out of 250000 steps (14%)
[21:22:31] Completed 37500 out of 250000 steps (15%)
[21:44:02] Completed 40000 out of 250000 steps (16%)
[22:05:32] Completed 42500 out of 250000 steps (17%)
[22:27:08] Completed 45000 out of 250000 steps (18%)
[22:48:38] Completed 47500 out of 250000 steps (19%)
[23:10:09] Completed 50000 out of 250000 steps (20%)
[23:31:47] Completed 52500 out of 250000 steps (21%)
[23:53:21] Completed 55000 out of 250000 steps (22%)
[00:14:54] Completed 57500 out of 250000 steps (23%)
[00:36:27] Completed 60000 out of 250000 steps (24%)
[00:57:59] Completed 62500 out of 250000 steps (25%)
[01:19:32] Completed 65000 out of 250000 steps (26%)
[01:41:05] Completed 67500 out of 250000 steps (27%)
[02:02:38] Completed 70000 out of 250000 steps (28%)
[02:24:09] Completed 72500 out of 250000 steps (29%)
[02:45:42] Completed 75000 out of 250000 steps (30%)
[03:07:14] Completed 77500 out of 250000 steps (31%)
[03:28:46] Completed 80000 out of 250000 steps (32%)
[03:50:20] Completed 82500 out of 250000 steps (33%)
[04:11:52] Completed 85000 out of 250000 steps (34%)
[04:33:25] Completed 87500 out of 250000 steps (35%)
[04:55:01] Completed 90000 out of 250000 steps (36%)
[05:16:33] Completed 92500 out of 250000 steps (37%)
[05:38:04] Completed 95000 out of 250000 steps (38%)
[05:59:37] Completed 97500 out of 250000 steps (39%)
[06:21:54] Completed 100000 out of 250000 steps (40%)
[06:43:32] Completed 102500 out of 250000 steps (41%)
[07:05:19] Completed 105000 out of 250000 steps (42%)
[07:26:50] Completed 107500 out of 250000 steps (43%)
[07:48:31] Completed 110000 out of 250000 steps (44%)
[08:10:31] Completed 112500 out of 250000 steps (45%)
[08:32:44] Completed 115000 out of 250000 steps (46%)
[08:54:21] Completed 117500 out of 250000 steps (47%)
[09:16:03] Completed 120000 out of 250000 steps (48%)
[09:37:44] Completed 122500 out of 250000 steps (49%)
[09:59:33] Completed 125000 out of 250000 steps (50%)
[10:21:24] Completed 127500 out of 250000 steps (51%)
[10:42:59] Completed 130000 out of 250000 steps (52%)
[11:04:34] Completed 132500 out of 250000 steps (53%)
[11:26:05] Completed 135000 out of 250000 steps (54%)
[11:47:39] Completed 137500 out of 250000 steps (55%)
[12:09:11] Completed 140000 out of 250000 steps (56%)
[12:30:42] Completed 142500 out of 250000 steps (57%)
[12:52:13] Completed 145000 out of 250000 steps (58%)
[13:13:44] Completed 147500 out of 250000 steps (59%)
[13:35:16] Completed 150000 out of 250000 steps (60%)
[13:56:46] Completed 152500 out of 250000 steps (61%)
[14:18:19] Completed 155000 out of 250000 steps (62%)
[14:39:51] Completed 157500 out of 250000 steps (63%)
[15:01:44] Completed 160000 out of 250000 steps (64%)
[15:23:56] Completed 162500 out of 250000 steps (65%)
[15:47:26] Completed 165000 out of 250000 steps (66%)
[16:11:53] Completed 167500 out of 250000 steps (67%)
[16:35:51] Completed 170000 out of 250000 steps (68%)
[17:00:20] Completed 172500 out of 250000 steps (69%)
[17:24:48] Completed 175000 out of 250000 steps (70%)
[17:49:14] Completed 177500 out of 250000 steps (71%)
[18:13:37] Completed 180000 out of 250000 steps (72%)
[18:35:29] Completed 182500 out of 250000 steps (73%)
[18:56:57] Completed 185000 out of 250000 steps (74%)
[19:18:27] Completed 187500 out of 250000 steps (75%)
[19:39:56] Completed 190000 out of 250000 steps (76%)
[20:01:26] Completed 192500 out of 250000 steps (77%)
[20:22:55] Completed 195000 out of 250000 steps (78%)
[20:44:26] Completed 197500 out of 250000 steps (79%)
[21:05:56] Completed 200000 out of 250000 steps (80%)
[21:27:26] Completed 202500 out of 250000 steps (81%)
[21:48:55] Completed 205000 out of 250000 steps (82%)
[22:10:32] Completed 207500 out of 250000 steps (83%)
[22:32:02] Completed 210000 out of 250000 steps (84%)
[22:53:30] Completed 212500 out of 250000 steps (85%)
[23:14:59] Completed 215000 out of 250000 steps (86%)
[23:36:28] Completed 217500 out of 250000 steps (87%)
[23:57:57] Completed 220000 out of 250000 steps (88%)
[00:19:26] Completed 222500 out of 250000 steps (89%)
[00:40:58] Completed 225000 out of 250000 steps (90%)
[01:02:28] Completed 227500 out of 250000 steps (91%)
[01:24:00] Completed 230000 out of 250000 steps (92%)
[01:45:50] Completed 232500 out of 250000 steps (93%)
[02:07:21] Completed 235000 out of 250000 steps (94%)
[02:28:51] Completed 237500 out of 250000 steps (95%)
[02:50:23] Completed 240000 out of 250000 steps (96%)
[03:11:57] Completed 242500 out of 250000 steps (97%)
[03:33:33] Completed 245000 out of 250000 steps (98%)
[03:55:07] Completed 247500 out of 250000 steps (99%)
[04:16:42] Completed 250000 out of 250000 steps (100%)
Writing final coordinates.
Average load imbalance: 6.2 %
Part of the total run time spent waiting due to load imbalance: 2.9 %
Parallel run - timing based on wallclock.
NODE (s) Real (s) (%)
Time: 130636.556 130636.556 100.0
1d12h17:16
(Mnbf/s) (GFlops) (ns/day) (hour/ns)
Performance: 698.323 37.137 0.661 36.288
Thanx for Using GROMACS - Have a Nice Day
[04:16:47] DynamicWrapper: Finished Work Unit: sleep=10000
[04:16:57]
[04:16:57] Finished Work Unit:
[04:16:57] - Reading up to 52713120 from "work/wudata_05.trr": Read 52713120
[04:16:57] trr file hash check passed.
[04:16:57] - Reading up to 47026752 from "work/wudata_05.xtc": Read 47026752
[04:16:58] xtc file hash check passed.
[04:16:58] edr file hash check passed.
[04:16:58] logfile size: 192550
[04:16:58] Leaving Run
[04:16:59] - Writing 100102370 bytes of core data to disk...
[04:17:00] ... Done.
[04:17:02] - Shutting down core
[04:17:02]
[04:17:02] Folding@home Core Shutdown: FINISHED_UNIT
[04:17:03] CoreStatus = 64 (100)
[04:17:03] Sending work to server
[04:17:03] Project: 6900 (Run 34, Clone 2, Gen 3)
[04:17:03] + Attempting to send results [June 11 04:17:03 UTC]
^C
Folding@Home Client Shutdown.
wisp@ubuntu:~/fah$ ./fah6
Note: Please read the license agreement (fah6 -license). Further
use of this software requires that you have read and accepted this agreement.
8 cores detected
--- Opening Log file [June 11 05:05:27 UTC]
# Linux SMP Console Edition ###################################################
###############################################################################
Folding@Home Client Version 6.34
http://folding.stanford.edu
###############################################################################
###############################################################################
Launch directory: /home/wisp/fah
Executable: ./fah6
Arguments: -smp 8 -bigadv
[05:05:27] - Ask before connecting: No
[05:05:27] - User name: leroyxx (Team 24)
[05:05:27] - User ID: 5522FC442C8CD81A
[05:05:27] - Machine ID: 1
[05:05:27]
[05:05:27] Loaded queue successfully.
[05:05:27] - Preparing to get new work unit...
[05:05:27] Cleaning up work directory
[05:05:27] Project: 6900 (Run 34, Clone 2, Gen 3)
[05:05:27] + Attempting to get work packet
[05:05:27] Passkey found
[05:05:27] + Attempting to send results [June 11 05:05:27 UTC]
[05:05:27] - Connecting to assignment server
[05:05:29] - Successful: assigned to (171.67.108.22).
[05:05:29] + News From Folding@Home: Welcome to Folding@Home
[05:05:29] Loaded queue successfully.
[05:08:35] + Closed connections
[05:08:35]
[05:08:35] + Processing work unit
[05:08:35] Core required: FahCore_a5.exe
[05:08:35] Core found.
[05:08:35] Working on queue slot 06 [June 11 05:08:35 UTC]
[05:08:35] + Working ...
[05:08:35]
[05:08:35] *------------------------------*
[05:08:35] Folding@Home Gromacs SMP Core
[05:08:35] Version 2.27 (Thu Feb 10 09:46:40 PST 2011)
[05:08:35]
[05:08:35] Preparing to commence simulation
[05:08:35] - Looking at optimizations...
[05:08:35] - Created dyn
[05:08:35] - Files status OK
[05:08:37] - Expanded 26601966 -> 32949201 (decompressed 123.8 percent)
[05:08:37] Called DecompressByteArray: compressed_data_size=26601966 data_size=32949201, decompressed_data_size=32949201 diff=0
[05:08:37] - Digital signature verified
[05:08:37]
[05:08:37] Project: 2685 (Run 1, Clone 5, Gen 107)
[05:08:37]
[05:08:37] Assembly optimizations on if available.
[05:08:37] Entering M.D.
:-) G R O M A C S (-:
Groningen Machine for Chemical Simulation
:-) VERSION 4.5.3 (-:
Written by Emile Apol, Rossen Apostolov, Herman J.C. Berendsen,
Aldert van Buuren, Pär Bjelkmar, Rudi van Drunen, Anton Feenstra,
Gerrit Groenhof, Peter Kasson, Per Larsson, Pieter Meulenhoff,
Teemu Murtola, Szilard Pall, Sander Pronk, Roland Schulz,
Michael Shirts, Alfons Sijbers, Peter Tieleman,
Berk Hess, David van der Spoel, and Erik Lindahl.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2010, The GROMACS development team at
Uppsala University & The Royal Institute of Technology, Sweden.
check out http://www.gromacs.org for more information.
:-) Gromacs (-:
Reading file work/wudata_06.tpr, VERSION 4.0.99_development_20090605 (single precision)
[05:08:43] Mapping NT from 8 to 8
Note: tpx file_version 70, software version 73
Starting 8 threads
Making 1D domain decomposition 8 x 1 x 1
starting mdrun 'SINGLE VESICLE in water'
27000002 steps, 108000.0 ps (continuing from step 26750002, 107000.0 ps).
[05:08:45] Completed 0 out of 250000 steps (0%)
[05:26:43] - Couldn't send HTTP request to server
[05:26:43] + Could not connect to Work Server (results)
[05:26:43] (130.237.232.141:8080)
[05:26:43] + Retrying using alternative port
[05:26:44] - Couldn't send HTTP request to server
[05:26:44] + Could not connect to Work Server (results)
[05:26:44] (130.237.232.141:80)
[05:26:44] - Error: Could not transmit unit 05 (completed June 11) to work server.
[05:26:44] Keeping unit 05 in queue.
[05:31:38] Completed 2500 out of 250000 steps (1%)
[05:54:33] Completed 5000 out of 250000 steps (2%)
[06:17:24] Completed 7500 out of 250000 steps (3%)
[06:40:35] Completed 10000 out of 250000 steps (4%)
[07:04:17] Completed 12500 out of 250000 steps (5%)
[07:27:51] Completed 15000 out of 250000 steps (6%)
[07:51:20] Completed 17500 out of 250000 steps (7%)
[08:14:54] Completed 20000 out of 250000 steps (8%)
[08:38:22] Completed 22500 out of 250000 steps (9%)
[09:01:50] Completed 25000 out of 250000 steps (10%)
[09:25:35] Completed 27500 out of 250000 steps (11%)